INFERNAL1/a [1.1.5 | Sep 2023] NAME hvt-mir-H ACC RF01940 DESC microRNA hvt-mir-H9 STATES 196 NODES 44 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 11:27:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/miRBase/commits/updates/RF01940/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.488281 CKSUM 1199045587 NULL 0.000 0.000 0.000 0.000 GA 96.00 TC 96.00 NC 45.30 EFP7GF -6.0732 0.72507 ECMLC 0.70570 -4.26869 3.75852 1600000 346244 0.003466 ECMGC 0.45249 -15.21877 -2.19227 1600000 145189 0.002755 ECMLI 0.69898 -3.04164 4.83294 1600000 294853 0.004070 ECMGI 0.53477 -9.35036 0.98593 1600000 100608 0.003976 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 80 100 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 IL 1 1 2 1 6 1 11 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 11 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 64 U A - - MP 3 2 3 7 6 2 13 80 100 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.836 -3.646 -3.712 0.031 -2.734 -4.307 1.585 -3.403 -3.721 0.346 -4.111 -1.556 3.127 -3.999 -0.419 -2.577 ML 4 2 3 7 6 1 9 79 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 8 79 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 4 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 10 80 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 10 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 63 A U - - MP 9 8 6 13 6 2 11 78 98 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.512 -2.619 -3.548 3.113 -3.751 -4.792 0.532 -3.607 -3.455 1.382 -3.988 -0.145 0.113 -4.025 -1.410 -2.401 ML 10 8 6 13 6 1 8 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 6 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 4 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 9 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 9 78 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 62 C G - - MP 15 14 6 19 4 2 9 76 96 -6.755 -6.962 -0.061 -5.376 -4.196 -4.067 -3.943 -0.335 -2.744 -4.400 3.424 -3.518 -3.983 -0.037 -4.279 -2.011 0.802 -4.287 -0.445 -2.836 ML 16 14 6 19 4 1 7 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 5 76 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 3 75 95 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 8 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 8 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 21 20 6 23 3 1 8 74 93 -7.786 -0.023 -6.440 -1.164 -1.219 -1.879 1.512 D 22 20 6 23 3 0 3 72 92 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 7 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 24 23 3 26 3 1 7 73 92 -8.189 -0.021 -6.506 -1.164 -1.219 -1.879 1.512 D 25 23 3 26 3 0 2 71 91 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 6 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 61 - C - - MR 27 26 3 29 3 1 7 72 91 -8.189 -0.021 -6.506 -1.318 1.487 -2.124 -0.820 D 28 26 3 29 3 0 1 70 90 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 5 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 60 - U - - MR 30 29 3 32 5 1 7 71 90 -6.939 -0.044 -6.754 -6.967 -7.858 -1.164 -1.219 -1.879 1.512 D 31 29 3 32 5 0 0 69 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 4 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 59 u g - - MP 33 32 3 37 6 2 8 70 89 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.737 -3.642 -3.519 -0.013 -2.394 -4.004 1.882 -3.130 -3.556 0.244 -3.886 -1.654 1.086 -3.855 2.741 -2.446 ML 34 32 3 37 6 1 2 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 2 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 3 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 58 C G - - MP 39 38 6 43 6 2 7 68 87 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -4.196 -4.067 -3.943 -0.335 -2.744 -4.400 3.424 -3.518 -3.983 -0.037 -4.279 -2.011 0.802 -4.287 -0.445 -2.836 ML 40 38 6 43 6 1 2 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 3 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 3 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 57 U A - - MP 45 44 6 49 6 2 7 66 85 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.836 -3.646 -3.712 0.031 -2.734 -4.307 1.585 -3.403 -3.721 0.346 -4.111 -1.556 3.127 -3.999 -0.419 -2.577 ML 46 44 6 49 6 1 2 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 56 c g - - MP 51 50 6 55 6 2 7 64 83 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.494 -3.459 -3.369 0.181 -2.344 -3.920 2.654 -3.054 -3.399 0.433 -3.778 -1.529 1.253 -3.633 1.758 -2.298 ML 52 50 6 55 6 1 1 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 55 A U - - MP 57 56 6 61 6 2 6 62 81 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.512 -2.619 -3.548 3.113 -3.751 -4.792 0.532 -3.607 -3.455 1.382 -3.988 -0.145 0.113 -4.025 -1.410 -2.401 ML 58 56 6 61 6 1 1 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 2 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 54 U A - - MP 63 62 6 67 6 2 6 60 79 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.836 -3.646 -3.712 0.031 -2.734 -4.307 1.585 -3.403 -3.721 0.346 -4.111 -1.556 3.127 -3.999 -0.419 -2.577 ML 64 62 6 67 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 2 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 53 G C - - MP 69 68 6 73 6 2 5 58 77 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -4.397 -2.931 -4.471 0.424 -4.747 -4.554 -0.195 -4.684 -4.094 3.543 -4.457 -0.620 -0.591 -4.239 -2.215 -3.353 ML 70 68 6 73 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 2 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 52 G C - - MP 75 74 6 79 6 2 5 56 75 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -4.397 -2.931 -4.471 0.424 -4.747 -4.554 -0.195 -4.684 -4.094 3.543 -4.457 -0.620 -0.591 -4.239 -2.215 -3.353 ML 76 74 6 79 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 51 A U - - MP 81 80 6 85 6 2 4 54 73 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.512 -2.619 -3.548 3.113 -3.751 -4.792 0.532 -3.607 -3.455 1.382 -3.988 -0.145 0.113 -4.025 -1.410 -2.401 ML 82 80 6 85 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 50 C G - - MP 87 86 6 91 4 2 2 52 71 -6.755 -6.962 -0.061 -5.376 -4.196 -4.067 -3.943 -0.335 -2.744 -4.400 3.424 -3.518 -3.983 -0.037 -4.279 -2.011 0.802 -4.287 -0.445 -2.836 ML 88 86 6 91 4 1 1 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - C - - - ML 93 92 6 95 3 1 1 49 69 -8.189 -0.021 -6.506 -1.318 1.487 -2.124 -0.820 D 94 92 6 95 3 0 0 48 67 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 49 - C - - MR 96 95 3 98 5 1 1 48 68 -6.939 -0.044 -6.754 -6.967 -7.858 -1.318 1.487 -2.124 -0.820 D 97 95 3 98 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 48 g c - - MP 99 98 3 103 6 2 2 47 67 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.015 -2.447 -3.119 0.802 -3.101 0.322 0.861 -3.395 -3.122 2.878 -3.559 -0.464 0.519 -3.107 -0.950 -2.212 ML 100 98 3 103 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 47 C G - - MP 105 104 6 109 6 2 2 45 65 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -4.196 -4.067 -3.943 -0.335 -2.744 -4.400 3.424 -3.518 -3.983 -0.037 -4.279 -2.011 0.802 -4.287 -0.445 -2.836 ML 106 104 6 109 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 46 C G - - MP 111 110 6 115 4 2 2 43 63 -6.755 -6.962 -0.061 -5.376 -4.196 -4.067 -3.943 -0.335 -2.744 -4.400 3.424 -3.518 -3.983 -0.037 -4.279 -2.011 0.802 -4.287 -0.445 -2.836 ML 112 110 6 115 4 1 1 44 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 43 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 42 62 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 45 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - - - ML 117 116 6 119 3 1 1 41 60 -8.189 -0.021 -6.506 -1.200 -2.356 1.618 -1.740 D 118 116 6 119 3 0 0 39 59 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 41 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 45 - A - - MR 120 119 3 122 5 1 1 40 59 -6.939 -0.044 -6.754 -6.967 -7.858 1.629 -2.015 -1.683 -1.525 D 121 119 3 122 5 0 0 38 58 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 44 A U - - MP 123 122 3 127 6 2 2 39 58 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.512 -2.619 -3.548 3.113 -3.751 -4.792 0.532 -3.607 -3.455 1.382 -3.988 -0.145 0.113 -4.025 -1.410 -2.401 ML 124 122 3 127 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 43 G C - - MP 129 128 6 133 6 2 2 37 56 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -4.397 -2.931 -4.471 0.424 -4.747 -4.554 -0.195 -4.684 -4.094 3.543 -4.457 -0.620 -0.591 -4.239 -2.215 -3.353 ML 130 128 6 133 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 42 c g - - MP 135 134 6 139 6 2 2 35 54 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -2.460 -2.443 -2.564 0.725 -2.146 -3.281 1.742 -2.644 -2.594 0.918 0.873 -0.774 1.251 -2.732 1.414 -1.678 ML 136 134 6 139 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 41 U A - - MP 141 140 6 145 6 2 2 33 52 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -3.836 -3.646 -3.712 0.031 -2.734 -4.307 1.585 -3.403 -3.721 0.346 -4.111 -1.556 3.127 -3.999 -0.419 -2.577 ML 142 140 6 145 6 1 1 31 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 40 G C - - MP 147 146 6 151 6 2 2 31 50 -9.037 -8.976 -0.022 -7.753 -8.032 -8.427 -4.397 -2.931 -4.471 0.424 -4.747 -4.554 -0.195 -4.684 -4.094 3.543 -4.457 -0.620 -0.591 -4.239 -2.215 -3.353 ML 148 146 6 151 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 39 U A - - MP 153 152 6 157 4 2 2 29 48 -6.755 -6.962 -0.061 -5.376 -3.836 -3.646 -3.712 0.031 -2.734 -4.307 1.585 -3.403 -3.721 0.346 -4.111 -1.556 3.127 -3.999 -0.419 -2.577 ML 154 152 6 157 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - G - - - ML 159 158 6 161 3 1 1 26 45 -7.786 -0.023 -6.440 -1.200 -2.356 1.618 -1.740 D 160 158 6 161 3 0 0 25 44 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - U - - - ML 162 161 3 164 3 1 1 25 44 -7.786 -0.023 -6.440 -1.164 -1.219 -1.879 1.512 D 163 161 3 164 3 0 0 24 43 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - C - - - ML 165 164 3 167 3 1 1 24 43 -7.786 -0.023 -6.440 -1.318 1.487 -2.124 -0.820 D 166 164 3 167 3 0 0 23 42 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - U - - - ML 168 167 3 170 3 1 1 22 41 -7.786 -0.023 -6.440 -1.164 -1.219 -1.879 1.512 D 169 167 3 170 3 0 0 21 40 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - A - - - ML 171 170 3 173 3 1 1 21 40 -7.786 -0.023 -6.440 1.629 -2.015 -1.683 -1.525 D 172 170 3 173 3 0 0 20 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - U - - - ML 174 173 3 176 3 1 1 20 39 -7.786 -0.023 -6.440 -1.164 -1.219 -1.879 1.512 D 175 173 3 176 3 0 0 19 38 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - U - - - ML 177 176 3 179 3 1 1 19 38 -7.786 -0.023 -6.440 -1.164 -1.219 -1.879 1.512 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - C - - - ML 180 179 3 182 3 1 1 18 36 -7.786 -0.023 -6.440 -1.318 1.487 -2.124 -0.820 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - G - - - ML 183 182 3 185 3 1 1 16 35 -7.786 -0.023 -6.440 -1.200 -2.356 1.618 -1.740 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - U - - - ML 186 185 3 188 3 1 1 15 33 -7.786 -0.023 -6.440 -1.164 -1.219 -1.879 1.512 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - U - - - ML 189 188 3 191 3 1 1 13 32 -7.786 -0.023 -6.440 -1.164 -1.219 -1.879 1.512 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - A - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 1.629 -2.015 -1.683 -1.525 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME hvt-mir-H ACC RF01940 DESC microRNA hvt-mir-H9 LENG 64 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 11:27:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/miRBase/commits/updates/RF01940/CM NSEQ 2 EFFN 1.777344 CKSUM 1199045587 STATS LOCAL MSV -7.8674 0.72507 STATS LOCAL VITERBI -9.2575 0.72507 STATS LOCAL FORWARD -3.4607 0.72507 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.60457 1.36591 1.34296 1.26301 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.69000 1.68396 2.38738 0.42371 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.48106 2.44186 1.59371 2.38924 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.91957 0.32156 2.64848 1.89532 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.34104 2.35184 2.84555 0.28705 4 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.34104 2.35184 2.84555 0.28705 5 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.67050 1.44282 2.42487 0.50082 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.90668 0.32348 2.64304 1.89330 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.66620 1.68375 2.37854 0.42752 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.49915 0.85459 2.25593 0.94775 9 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.48295 2.43711 1.59340 2.38169 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.66538 1.68375 2.37823 0.42766 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.39983 2.93451 0.22319 2.87971 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.39955 2.93422 0.22328 2.87929 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.48317 2.43657 1.59336 2.38084 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.90463 0.32379 2.64217 1.89298 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.49445 0.28872 3.06201 2.10831 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.05454 1.58456 0.61988 2.04950 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.90603 0.32358 2.64276 1.89320 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.90734 0.32338 2.64332 1.89340 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.39440 3.22613 0.21284 2.80057 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.48335 2.43612 1.59333 2.38012 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.40017 2.93486 0.22310 2.88021 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.07944 1.46634 1.24744 1.03004 23 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.66618 1.68375 2.37853 0.42753 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.40046 2.93515 0.22302 2.88063 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.66538 1.68375 2.37823 0.42766 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.39440 3.22613 0.21284 2.80057 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.34104 2.35184 2.84555 0.28705 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.49445 0.28872 3.06201 2.10831 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.34104 2.35184 2.84555 0.28705 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.21345 2.94778 2.70095 2.62270 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.34104 2.35184 2.84555 0.28705 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.34104 2.35184 2.84555 0.28705 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.49445 0.28872 3.06201 2.10831 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.39440 3.22613 0.21284 2.80057 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.34104 2.35184 2.84555 0.28705 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.34104 2.35184 2.84555 0.28705 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.21345 2.94778 2.70095 2.62270 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.48655 2.55661 1.52046 2.41823 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.09646 0.26133 2.76600 2.10493 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.48631 2.55735 1.52046 2.41925 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 1.74655 2.04255 0.61203 1.87290 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.10294 0.26054 2.76862 2.10618 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.61813 1.85522 2.25396 0.40698 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.21345 2.94778 2.70095 2.62270 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.16914 2.81148 0.27959 2.66617 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.16989 2.81239 0.27930 2.66734 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.28807 0.52283 1.94855 1.81266 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.49445 0.28872 3.06201 2.10831 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.16666 2.80851 0.28056 2.66231 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.61037 1.85471 2.25149 0.40834 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.09299 0.26176 2.76460 2.10426 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 3.09392 0.26164 2.76497 2.10444 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.48655 2.55661 1.52046 2.41823 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.61272 1.85487 2.25224 0.40793 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 1.81027 2.41729 0.44062 2.26730 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.48615 2.55786 1.52046 2.41993 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.17002 2.81254 0.27925 2.66753 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.94794 2.60125 0.36397 2.42656 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.34104 2.35184 2.84555 0.28705 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.49445 0.28872 3.06201 2.10831 61 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.17335 2.81653 0.27796 2.67272 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.62795 1.85586 2.25706 0.40527 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 0.48317 2.56714 1.52048 2.43257 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //