# STOCKHOLM 1.0
#=GF ID mir-1251
#=GF AC RF01938
#=GF DE mir-1251 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 81.0
#=GF NC 69.2
#=GF TC 81.6
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR MIPF; MIPF0000621;
#=GF DR URL; http://www.mirbase.org;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 20413612
#=GF RT Mammalian microRNAs: experimental evaluation of novel and previously
#=GF RT annotated genes
#=GF RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
#=GF RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
#=GF RA DP
#=GF RL Genes Dev. 2010;24:992-1009.
#=GF RN [2]
#=GF RM 18760970
#=GF RT Computational identification of novel microRNA homologs in the chimpanzee
#=GF RT genome
#=GF RA Baev V, Daskalova E, Minkov I
#=GF RL Comput Biol Chem. 2009;33:62-70.
#=GF RN [3]
#=GF RM 18945293
#=GF RT Annotation of 390 bovine miRNA genes by sequence similarity with other
#=GF RT species
#=GF RA Strozzi F, Mazza R, Malinverni R, Williams JL
#=GF RL Anim Genet. 2009;40:125.
#=GF RN [4]
#=GF RM 18402656
#=GF RT Hidden layers of human small RNAs
#=GF RA Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub
#=GF RA CO, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y
#=GF RL BMC Genomics. 2008;9:157.
#=GF RN [5]
#=GF RM 18285502
#=GF RT Application of massively parallel sequencing to microRNA profiling and
#=GF RT discovery in human embryonic stem cells
#=GF RA Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL,
#=GF RA Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA
#=GF RL Genome Res. 2008;18:610-621.
#=GF RN [6]
#=GF RM 20214803
#=GF RT Genome-wide comparative analysis of microRNAs in three non-human primates
#=GF RA Brameier M
#=GF RL BMC Res Notes. 2010;3:64.
#=GF RN [7]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC Imported from miRBase.
#=GF WK MicroRNA
#=GF SQ 7

URS000075C678_9606/2-67   UGGACUCUAGCUGCCAAAGGCGCUUCUCCUUCUGAACAGAGCGCUUUGCUCAGCCAGUGUAGACAU
URS000075AE23_9913/2-67   UGGACUCUAGCUGCCAAAGGCGCUUCUCCUUCUGAACCGAGCGCUUUGCUCAGCCAGUGUAGACAU
URS00007143EB_10090/11-76 UGGACUCUAGCUGCCAAAGGCGCUUCUCCUUCUGAACAGAGCGCUUUGCUCAGCCAGUGUAGACAU
URS000075C678_9600/2-67   UGGACUCUAGCUGCCAAAGGCGCUUCUCCUUCUGAACAGAGCGCUUUGCUCAGCCAGUGUAGACAU
URS000075D36F_9598/1-66   UGGACUCUAGCUGCCAAAGGCGCUUCUCCUUCUGAACAGAGCGCUUUGCUCAGCCAGUGUAGACAU
URS00007E486E_9544/1-59   ---ACUCUAGCUGCCAAAGGCGCUUCUCCUUCUGAACAGAGCGCUUUGCUCAGCCAGUGUAG----
URS00007E49B4_13616/1-59  ---ACUCUAGCUGACUAAGGCGCUUCUCUUUCUAAAAAGAGCGCUUUACUUAGCCAGUGUAG----
#=GC SS_cons              :::<<-<<-<<<<---<<<<<<<<<-<<_____>>--->>>>>>>>>--->>>>->>->>::::::
#=GC RF                   UGGACUCUAGCUGcCAAAgGCGCUuCUCCUUCUGAAcAgAGCGCuUUGCUCAGCCAGUGUAGACAU
//
