INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2774 ACC RF01924 DESC microRNA mir-2774 STATES 205 NODES 50 CLEN 67 W 83 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 02:45:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/14.9/microrna/update_families/RF01924/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 1.835449 CKSUM 38986915 NULL 0.000 0.000 0.000 0.000 GA 51.00 TC 51.00 NC 50.90 EFP7GF -9.1337 0.71906 ECMLC 0.72385 -4.55308 3.31841 1600000 357855 0.003353 ECMGC 0.49466 -14.07213 -2.54720 1600000 119656 0.003343 ECMLI 0.78298 -1.83627 4.85683 1600000 226535 0.005297 ECMGI 0.50966 -10.23420 0.25994 1600000 84114 0.004755 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 103 -6.909 -7.116 -0.055 -5.530 IL 1 1 2 1 4 1 19 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 19 83 103 -7.928 -0.021 -6.582 1.703 -2.299 -1.938 -1.834 D 4 2 3 5 3 0 14 82 102 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 18 82 102 -7.928 -0.021 -6.582 -0.370 1.100 -1.544 -0.435 D 7 5 3 8 3 0 13 81 101 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 17 81 101 -8.321 -0.019 -6.639 1.289 -1.517 -0.510 -0.987 D 10 8 3 11 3 0 12 80 99 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 16 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 67 - U - - MR 12 11 3 14 3 1 16 80 100 -8.321 -0.019 -6.639 -1.419 -1.427 -2.149 1.599 D 13 11 3 14 3 0 10 78 98 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 15 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 66 - g - - MR 15 14 3 17 3 1 15 79 99 -8.321 -0.019 -6.639 -0.102 -1.142 0.812 -0.218 D 16 14 3 17 3 0 10 77 97 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 14 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - C - - MR 18 17 3 20 5 1 14 78 98 -7.062 -0.040 -6.877 -7.089 -7.981 -1.654 1.600 -2.475 -1.085 D 19 17 3 20 5 0 9 77 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 13 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 64 A U - - MP 21 20 3 25 6 2 14 77 97 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -3.734 -2.781 -3.757 3.294 -4.067 -5.124 0.229 -3.803 -3.651 1.140 -4.196 -0.266 -0.188 -4.321 -1.712 -2.594 ML 22 20 3 25 6 1 10 76 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 9 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 6 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 11 77 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 11 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 63 C G - - MP 27 26 6 31 6 2 12 75 95 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -3.851 -3.774 -3.668 -0.017 -2.523 -4.182 3.105 -3.264 -3.688 0.247 -4.041 -1.744 1.643 -3.958 -0.196 -2.542 ML 28 26 6 31 6 1 9 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 8 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 10 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 10 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 62 a u - - MP 33 32 6 37 4 2 10 73 93 -6.909 -7.116 -0.055 -5.530 -0.574 -0.014 -2.204 1.880 -2.264 -3.007 1.185 -2.522 -2.235 1.590 -2.752 -0.100 1.001 -2.326 -0.377 -1.377 ML 34 32 6 37 4 1 8 73 93 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 6 73 93 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 5 72 92 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 9 75 95 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 9 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 7 - u - - - ML 39 38 6 41 3 1 8 71 90 -7.928 -0.021 -6.582 -0.151 -0.420 -1.179 0.934 D 40 38 6 41 3 0 4 69 89 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 8 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 8 - u - - - ML 42 41 3 44 3 1 7 70 89 -7.928 -0.151 -3.393 -0.424 -0.449 -0.661 0.918 D 43 41 3 44 3 0 4 68 88 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 8 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - C - - - ML 45 44 3 47 3 1 7 69 88 -8.202 -0.021 -6.520 -1.351 1.500 -2.159 -0.846 D 46 44 3 47 3 0 3 67 87 -6.171 -0.458 -1.954 IL 47 47 3 47 3 1 6 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 61 - U - - MR 48 47 3 50 3 1 7 67 87 -8.321 -0.019 -6.639 -0.886 -0.494 -1.622 1.277 D 49 47 3 50 3 0 1 66 85 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 5 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 60 - U - - MR 51 50 3 53 3 1 6 66 86 -8.321 -0.019 -6.639 -1.419 -1.427 -2.149 1.599 D 52 50 3 53 3 0 0 65 84 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 5 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 59 - C - - MR 54 53 3 56 5 1 6 65 85 -7.062 -0.040 -6.877 -7.089 -7.981 -1.654 1.600 -2.475 -1.085 D 55 53 3 56 5 0 0 64 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 3 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 58 G C - - MP 57 56 3 61 6 2 6 64 84 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -4.675 -3.062 -4.768 0.245 -5.138 -4.668 -0.520 -5.006 -4.284 3.622 -4.626 -0.759 -0.907 -4.424 -2.553 -3.646 ML 58 56 3 61 6 1 2 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 2 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 3 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 3 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 57 G C - - MP 63 62 6 67 6 2 5 62 82 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -4.675 -3.062 -4.768 0.245 -5.138 -4.668 -0.520 -5.006 -4.284 3.622 -4.626 -0.759 -0.907 -4.424 -2.553 -3.646 ML 64 62 6 67 6 1 2 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 2 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 2 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 56 A U - - MP 69 68 6 73 4 2 3 60 80 -6.909 -7.116 -0.055 -5.530 -3.734 -2.781 -3.757 3.294 -4.067 -5.124 0.229 -3.803 -3.651 1.140 -4.196 -0.266 -0.188 -4.321 -1.712 -2.594 ML 70 68 6 73 4 1 1 61 81 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 59 79 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 2 62 82 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 13 - C - - - ML 75 74 6 77 3 1 2 58 77 -7.928 -0.021 -6.582 -0.956 1.149 -1.768 -0.039 D 76 74 6 77 3 0 0 57 76 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - C - - - ML 78 77 3 80 3 1 2 57 76 -8.321 -0.019 -6.639 -1.654 1.600 -2.475 -1.085 D 79 77 3 80 3 0 0 56 75 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 55 - g - - MR 81 80 3 83 3 1 1 56 75 -8.321 -0.019 -6.639 -0.368 -0.989 0.535 0.347 D 82 80 3 83 3 0 0 54 74 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 54 - C - - MR 84 83 3 86 5 1 1 55 74 -7.062 -0.040 -6.877 -7.089 -7.981 -1.654 1.600 -2.475 -1.085 D 85 83 3 86 5 0 0 54 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 15 53 g u - - MP 87 86 3 91 6 2 2 54 73 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -3.375 -2.308 -3.494 1.631 -4.096 -4.593 0.238 -3.684 -3.344 2.144 -3.837 2.325 -0.032 -3.818 -1.684 -2.322 ML 88 86 3 91 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 52 u a - - MP 93 92 6 97 6 2 2 52 71 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -3.172 -3.210 -3.185 0.296 -0.159 -3.871 1.747 -3.057 -3.209 0.444 -3.672 -1.390 2.785 -3.395 -0.210 -2.174 ML 94 92 6 97 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 17 51 C G - - MP 99 98 6 103 4 2 2 50 69 -6.909 -7.116 -0.055 -5.530 -4.480 -4.380 -4.182 -0.618 -2.915 -4.603 3.529 -3.718 -4.229 -0.368 -4.497 -2.326 0.606 -4.554 -0.620 -3.071 ML 100 98 6 103 4 1 1 50 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 50 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 49 68 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 52 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - G - - - ML 105 104 6 107 3 1 1 47 67 -7.928 -0.021 -6.582 -1.503 -2.711 1.705 -2.098 D 106 104 6 107 3 0 0 46 65 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - G - - - ML 108 107 3 110 3 1 1 46 65 -8.321 -0.019 -6.639 -1.503 -2.711 1.705 -2.098 D 109 107 3 110 3 0 0 45 64 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 50 - A - - MR 111 110 3 113 5 1 1 45 64 -7.062 -0.040 -6.877 -7.089 -7.981 1.703 -2.299 -1.938 -1.834 D 112 110 3 113 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 20 49 U A - - MP 114 113 3 118 6 2 2 44 63 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -4.118 -3.941 -3.964 -0.241 -2.922 -4.535 1.405 -3.612 -3.969 0.024 -4.346 -1.842 3.292 -4.272 -0.599 -2.801 ML 115 113 3 118 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 48 C G - - MP 120 119 6 124 6 2 2 42 61 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -4.480 -4.380 -4.182 -0.618 -2.915 -4.603 3.529 -3.718 -4.229 -0.368 -4.497 -2.326 0.606 -4.554 -0.620 -3.071 ML 121 119 6 124 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 47 u g - - MP 126 125 6 130 6 2 2 40 59 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -3.549 -3.533 -3.432 0.080 -2.431 -3.992 1.839 -3.136 -3.466 0.310 -3.850 -1.625 1.916 -3.699 2.314 -2.377 ML 127 125 6 130 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 23 46 A U - - MP 132 131 6 136 6 2 2 38 57 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -3.734 -2.781 -3.757 3.294 -4.067 -5.124 0.229 -3.803 -3.651 1.140 -4.196 -0.266 -0.188 -4.321 -1.712 -2.594 ML 133 131 6 136 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 24 45 c g - - MP 138 137 6 142 6 2 2 36 55 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -2.764 -2.774 -2.853 0.554 -2.328 -3.582 2.749 -2.868 -2.877 0.719 -0.766 -1.040 1.230 -3.024 0.454 -1.915 ML 139 137 6 142 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 25 44 C G - - MP 144 143 6 148 6 2 2 34 53 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -3.536 -3.519 -1.030 -0.060 -2.898 -4.242 3.336 -3.513 -3.606 0.186 -4.043 -1.681 0.653 -3.766 -0.735 -2.595 ML 145 143 6 148 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 26 43 G C - - MP 150 149 6 154 6 2 2 32 51 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -4.675 -3.062 -4.768 0.245 -5.138 -4.668 -0.520 -5.006 -4.284 3.622 -4.626 -0.759 -0.907 -4.424 -2.553 -3.646 ML 151 149 6 154 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 27 42 A U - - MP 156 155 6 160 6 2 2 30 49 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -3.734 -2.781 -3.757 3.294 -4.067 -5.124 0.229 -3.803 -3.651 1.140 -4.196 -0.266 -0.188 -4.321 -1.712 -2.594 ML 157 155 6 160 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 28 41 G C - - MP 162 161 6 166 6 2 2 28 47 -9.093 -9.032 -0.021 -7.808 -8.088 -8.483 -4.675 -3.062 -4.768 0.245 -5.138 -4.668 -0.520 -5.006 -4.284 3.622 -4.626 -0.759 -0.907 -4.424 -2.553 -3.646 ML 163 161 6 166 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 29 40 C G - - MP 168 167 6 172 4 2 2 26 45 -6.909 -7.116 -0.055 -5.530 -4.480 -4.380 -4.182 -0.618 -2.915 -4.603 3.529 -3.718 -4.229 -0.368 -4.497 -2.326 0.606 -4.554 -0.620 -3.071 ML 169 167 6 172 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 30 - A - - - ML 174 173 6 176 3 1 1 24 42 -7.928 -0.021 -6.582 1.703 -2.299 -1.938 -1.834 D 175 173 6 176 3 0 0 22 41 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 31 - A - - - ML 177 176 3 179 3 1 1 22 41 -7.928 -0.021 -6.582 1.703 -2.299 -1.938 -1.834 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 32 - U - - - ML 180 179 3 182 3 1 1 21 40 -7.928 -0.021 -6.582 -1.419 -1.427 -2.149 1.599 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 33 - A - - - ML 183 182 3 185 3 1 1 20 39 -7.928 -0.021 -6.582 1.292 -1.298 -1.272 -0.452 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 34 - U - - - ML 186 185 3 188 3 1 1 19 37 -7.928 -0.021 -6.582 -0.342 -0.925 -1.381 1.202 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 35 - C - - - ML 189 188 3 191 3 1 1 18 36 -7.928 -0.021 -6.582 -1.034 1.229 -1.849 -0.169 D 190 188 3 191 3 0 0 17 36 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 36 - A - - - ML 192 191 3 194 3 1 1 16 35 -7.928 -0.021 -6.582 1.703 -2.299 -1.938 -1.834 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 37 - C - - - ML 195 194 3 197 3 1 1 15 33 -7.928 -0.021 -6.582 -1.654 1.600 -2.475 -1.085 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 38 - C - - - ML 198 197 3 200 3 1 1 13 32 -7.928 -0.021 -6.582 -1.654 1.600 -2.475 -1.085 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 39 - C - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -1.034 1.229 -1.849 -0.169 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2774 ACC RF01924 DESC microRNA mir-2774 LENG 67 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 02:45:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/14.9/microrna/update_families/RF01924/CM NSEQ 7 EFFN 2.601074 CKSUM 38986915 STATS LOCAL MSV -8.3437 0.71906 STATS LOCAL VITERBI -8.9632 0.71906 STATS LOCAL FORWARD -3.4540 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47331 1.22232 1.43704 1.43272 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 0.00000 * 1 0.13586 3.36106 3.07334 3.07757 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 2 1.76730 0.50053 2.70134 1.85865 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 3 0.42161 2.63585 1.76653 2.28840 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 4 0.29502 2.92270 1.93979 2.84802 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 5 2.75275 0.51184 2.50972 1.36429 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 6 0.89000 1.86451 1.40436 1.66683 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 7 1.53831 1.71049 2.31749 0.68130 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 8 1.78314 1.73484 1.87112 0.69013 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.14666 3.93353 2.14697 1.46634 0.26236 1.09861 0.40547 9 2.73586 0.22507 3.31045 2.30058 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.04434 3.83120 3.83120 1.46634 0.26236 0.28898 1.38240 10 2.65991 3.35818 0.15296 3.29459 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 11 2.66231 3.36118 0.15247 3.29871 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 12 0.29511 2.92227 1.93970 2.84742 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 13 2.28587 0.48231 2.87368 1.49402 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 14 2.99398 0.17395 3.56999 2.50820 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 15 1.53463 2.77229 0.43434 2.60023 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 16 2.51812 1.30635 2.33208 0.59514 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 17 3.32237 0.21175 3.11129 2.20527 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 18 2.82451 3.71882 0.12865 3.29374 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 19 2.82451 3.71882 0.12865 3.29374 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 20 3.11014 2.00797 2.87500 0.26824 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 21 3.32334 0.21165 3.11177 2.20545 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 22 2.74867 1.54858 2.53279 0.44006 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 23 0.29495 2.92300 1.93985 2.84845 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 24 2.25187 0.75288 1.76965 1.37279 24 c - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 25 2.37056 0.34731 2.60444 2.07116 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 26 2.66244 3.36134 0.15244 3.29894 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 27 0.29528 2.92153 1.93955 2.84638 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 28 2.66165 3.36034 0.15260 3.29757 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 29 3.31580 0.21238 3.10805 2.20409 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 30 0.13586 3.36106 3.07334 3.07757 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 31 0.13586 3.36106 3.07334 3.07757 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 32 2.72476 2.66933 3.24655 0.19088 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 33 0.41727 2.44054 2.43923 1.79086 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 34 1.71886 2.18169 2.52816 0.46510 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 35 2.36308 0.42483 2.95181 1.61073 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 36 0.13586 3.36106 3.07334 3.07757 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 37 2.99398 0.17395 3.56999 2.50820 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 38 2.99398 0.17395 3.56999 2.50820 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 39 2.36308 0.42483 2.95181 1.61073 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 40 2.48144 3.27482 0.18335 3.07747 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 41 3.49168 0.18130 3.19722 2.35925 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 42 3.06986 2.24766 2.73192 0.24484 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 43 3.49447 0.18108 3.19848 2.35978 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 44 2.31765 2.77150 0.26746 2.60899 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 45 1.80446 2.23780 0.51189 2.04498 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 46 3.07544 2.24842 2.73413 0.24422 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 47 1.33042 2.69589 0.53208 2.51617 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 48 2.48761 3.28361 0.18176 3.08784 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 49 0.30311 3.06778 1.84555 2.86441 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 50 0.13586 3.36106 3.07334 3.07757 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 51 2.48586 3.28112 0.18221 3.08490 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 52 0.55962 2.50074 1.40018 2.30259 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 53 2.82674 1.32239 2.57722 0.51364 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 54 2.99398 0.17395 3.56999 2.50820 54 C - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 55 1.75037 2.19011 0.93341 1.13577 55 g - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 56 3.07627 2.24853 2.73446 0.24413 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 57 3.50814 0.17999 3.20466 2.36236 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 58 3.51495 0.17946 3.20772 2.36363 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 59 2.99398 0.17395 3.56999 2.50820 59 C - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 60 2.72476 2.66933 3.24655 0.19088 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 61 2.20954 1.79068 2.72872 0.41840 61 U - - - 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 62 1.65697 1.30952 1.65965 1.05231 62 u - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 63 1.54635 2.67628 0.45069 2.51372 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 64 3.08573 2.24981 2.73819 0.24310 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 65 2.99398 0.17395 3.56999 2.50820 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 66 1.52381 2.29977 0.73472 1.59849 66 g - - : 1.38629 1.38629 1.38629 1.38629 0.03994 3.93353 3.93353 1.46634 0.26236 1.09861 0.40547 67 2.72476 2.66933 3.24655 0.19088 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.02017 3.91376 * 1.46634 0.26236 0.00000 * //