# STOCKHOLM 1.0
#=GF ID mir-2238
#=GF AC RF01915
#=GF DE mir-2238 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 52.2
#=GF NC 51.9
#=GF TC 53.5
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR MIPF; MIPF0000822;
#=GF DR URL; http://www.mirbase.org;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 19755563
#=GF RT Repertoire and evolution of miRNA genes in four divergent nematode species
#=GF RA de Wit E, Linsen SE, Cuppen E, Berezikov E
#=GF RL Genome Res. 2009;19:2064-2074.
#=GF RN [2]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF WK MicroRNA
#=GF SQ 13

URS0000D56A66_54126/13-98  CUAGUC-UGCCUACUUCCCGUCU-ACUCCUUUCGUCAUUCGUUGAUACGAAUACGAAUGACA-AUC--GAGUGGGUGAGAAGGAAGACUUG
URS0000D534E7_54126/5-86   CUAGUC-UGCCGACUUCCCGUCU-ACUCCUUUCGUCAUU----GAUACGAAUUCGAAUGACA-AUC--GAGUGGGUGAGAAGGAAGACUUG
URS0000D549CD_54126/14-101 CUAGUCAUUCCUCUUUCCCUUUUCACUCAUCUCGUCAAUCGAUAAUUGAAUUUCGAAUGACA-GAU--CAGUGCGCGAGAAGGAAGACUAG
URS0000D4F226_54126/6-92   CUAGUCUUUUCUCUUUCCCGUUC-ACUCUUCUCGUCAGUCGAUGAUCGAAUAUAGAAUGACA-GAA--CAGUGCGCGAGAAGGAAGACUAG
URS0000D5410E_54126/13-99  CUAGUCGAUCCUCUUUCCCAUUC-ACUCUUCUCGUCAGUCGAUGAUUGAAUAUCGAAUGACA-GAU--CAGUGCGCGAGAAGGAAGACUAG
URS0000627839_54126/17-103 CUAGUCGAUCCUCUUUCCCAUUC-ACUCUUCUCGUCAGUCGAUGAUUGAAUAUCGAAUGACA-GAU--CAGUGCGCGAGAAGGAAGACUAG
URS0000D55C7E_54126/6-92   CUAGUCGAUCCUCUUUCCCGUUC-ACUCUUCUCGUCAGUCGAUGAUUGAAUAUCGAAUGACA-GAU--CAGUGCGCGAGAAGGAAGACUAG
URS0000D54824_54126/10-96  CUAGUCGAUCCUCUUUCCCGUUC-ACUCUUCUCGUCAGUCGAUGAU-GAAUUUCGAAUGACAGAAC--AAGUGCGCGAGAAGGAAGACUAG
URS0000D5686D_54126/1-59   -----------------CCGUUC-ACUCUUCUCGUCAGUCGAUGAUUGAAUUUCGAAUGUCA-GAA--CAGUGCGCGAGA-----------
URS0000D51DBD_54126/1-59   -----------------CCGUUC-ACUCUUCUCGUCAGUCGAUGAUUGAAAUUCGAAUGACU-GAA--CAGUGCGCGAGA-----------
URS0000D540DD_54126/1-62   -----------------CCGUUC-ACUCAUCUCGUCAAUCGAUGAUUGAAUUUCGAGUGACAGAUCAUCAGUGCGCGAGA-----------
URS0000D5683F_54126/9-95   GCAGUC-AAUUCCCUUUUCGUUC-GCUCCACAUGUCAAUCGUUGAUUCGAGUACGAAUGACAAGUG--CAGAUGGCGAGAAGGUAGACUCC
URS0000D541D2_54126/1-59   -----------------CCGUUC-ACUCAACUCGUCAGUCGAUUAUUGAAUUUCGAAUGACA-GUU--CAGUGCGCGAGA-----------
#=GC SS_cons               <<<<<<.-<<<<---<<-<<<-<.<<<-<<-<-<<<<-<<<<__________>>>>->>>>>.>>-..->>>>->>>->>>>>>->>>>>>
#=GC RF                    cuaGuC.auccucuUucCCguUc.aCUCuuCuCGUCAgUCGaUGAUugaAuuuCGAAUGACa.aau..cAGugcgcGAgaaggaAGaCuag
//
