INFERNAL1/a [1.1.4 | Dec 2020] NAME HOTAIR_2 ACC RF01905 DESC HOTAIR conserved region 2 STATES 211 NODES 71 CLEN 69 W 152 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 13:57:10 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 2.897705 CKSUM 1997375915 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 66.80 NC 50.10 EFP7GF -9.8498 0.71873 ECMLC 0.65118 -10.51251 -0.27053 1600000 945518 0.001269 ECMGC 0.40260 -19.32785 -5.59591 1600000 100707 0.003972 ECMLI 0.64786 -8.20632 1.13996 1600000 511507 0.002346 ECMGI 0.46013 -10.16592 0.80898 1600000 62399 0.006410 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 152 236 -7.298 -7.505 -0.042 -5.920 IL 1 1 2 1 4 1 26 154 239 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 154 238 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 25 152 237 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 4 2 3 5 3 0 20 149 233 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 27 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 24 151 235 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 7 5 3 8 3 0 20 148 232 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 26 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 23 150 234 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 10 8 3 11 3 0 19 147 230 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 25 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 23 148 232 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 13 11 3 14 3 0 18 145 229 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 24 155 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 22 147 231 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 16 14 3 17 3 0 17 144 227 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 24 153 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 21 146 229 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 19 17 3 20 3 0 17 143 226 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 23 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 21 145 228 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 22 20 3 23 3 0 16 141 225 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 22 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 20 143 227 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 25 23 3 26 3 0 15 140 223 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 21 150 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 19 142 225 -5.672 -0.058 -5.672 -0.979 -1.023 -0.240 1.107 D 28 26 3 29 3 0 15 139 222 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 21 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 18 141 224 -5.672 -0.058 -5.672 -0.814 -2.102 1.539 -1.775 D 31 29 3 32 3 0 14 137 220 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 20 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 18 139 222 -5.672 -0.058 -5.672 -0.482 -1.073 -1.277 1.261 D 34 32 3 35 3 0 13 136 219 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 19 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 17 138 221 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 37 35 3 38 3 0 12 135 217 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 18 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 1 16 137 219 -5.672 -0.058 -5.672 -0.617 0.912 -1.161 0.028 D 40 38 3 41 3 0 12 133 216 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 18 143 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - g - - - ML 42 41 3 44 3 1 15 135 218 -5.672 -0.058 -5.672 -0.282 -1.136 0.948 -0.333 D 43 41 3 44 3 0 11 132 214 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 17 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 45 44 3 47 3 1 15 134 216 -5.672 -0.058 -5.672 -0.360 -0.382 -0.501 0.805 D 46 44 3 47 3 0 10 131 213 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 16 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 14 133 215 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 49 47 3 50 3 0 10 129 211 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 15 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 13 131 213 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 52 50 3 53 3 0 9 128 210 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 15 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 12 130 212 -5.672 -0.058 -5.672 -1.671 1.434 -1.881 -0.491 D 55 53 3 56 3 0 8 127 208 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 14 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 11 129 210 -5.672 -0.058 -5.672 -1.592 1.367 -1.796 -0.321 D 58 56 3 59 3 0 8 126 207 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 13 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 10 127 209 -5.672 -0.058 -5.672 1.303 -1.532 -0.412 -1.201 D 61 59 3 62 3 0 7 124 206 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 12 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 10 126 207 -5.672 -0.138 -3.808 -1.887 -2.699 1.761 -2.419 D 64 62 3 65 3 0 7 123 204 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 11 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 9 125 206 -5.595 -0.178 -3.388 -0.548 1.023 -1.169 -0.253 D 67 65 3 68 3 0 6 122 203 -12.461 -0.632 -1.496 IL 68 68 3 68 3 1 11 131 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 9 123 205 -5.566 -0.062 -5.566 -1.231 -0.435 -1.404 1.296 D 70 68 3 71 3 0 5 120 200 -12.693 -2.727 -0.237 IL 71 71 3 71 3 1 11 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 1 8 122 203 -5.566 -0.062 -5.566 -0.622 1.072 -1.202 -0.297 D 73 71 3 74 3 0 4 119 199 -12.693 -2.727 -0.237 IL 74 74 3 74 3 1 10 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - g - - - ML 75 74 3 77 3 1 8 121 201 -5.566 -0.062 -5.566 -0.349 -0.900 0.668 0.125 D 76 74 3 77 3 0 4 119 199 -12.693 -0.519 -1.727 IL 77 77 3 77 3 1 9 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 7 119 200 -5.672 -0.058 -5.672 -2.124 1.683 -2.334 -1.472 D 79 77 3 80 3 0 2 116 196 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 9 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 81 80 3 83 3 1 6 118 198 -5.672 -0.058 -5.672 -1.336 -0.368 -1.518 1.310 D 82 80 3 83 3 0 2 115 195 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 8 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 6 117 197 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 85 83 3 86 3 0 1 113 193 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 7 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 87 86 3 89 3 1 5 115 195 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 88 86 3 89 3 0 1 112 192 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 7 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 5 114 194 -5.672 -0.058 -5.672 -0.543 -0.371 -1.066 1.045 D 91 89 3 92 3 0 0 110 190 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 6 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 4 112 192 -5.672 -0.058 -5.672 -1.472 1.384 -0.875 -1.046 D 94 92 3 95 3 0 0 109 188 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 6 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 4 111 190 -5.672 -0.058 -5.672 -0.536 -0.491 -1.086 1.089 D 97 95 3 98 3 0 0 108 187 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 5 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 99 98 3 101 3 1 3 110 189 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 100 98 3 101 3 0 0 106 185 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 5 117 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 102 101 3 104 3 1 3 108 187 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 103 101 3 104 3 0 0 105 184 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 4 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 105 104 3 107 3 1 2 107 186 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 106 104 3 107 3 0 0 103 182 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 4 114 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 108 107 3 110 3 1 2 105 184 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 109 107 3 110 3 0 0 102 180 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 3 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 111 110 3 113 3 1 2 104 182 -3.571 -0.158 -5.672 1.756 -2.438 -2.176 -2.200 D 112 110 3 113 3 0 0 100 179 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 3 107 185 -0.579 -1.597 -13.306 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - A - - - ML 114 113 3 116 3 1 1 102 181 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 115 113 3 116 3 0 0 99 177 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - C - - - ML 117 116 3 119 3 1 1 101 179 -5.672 -0.058 -5.672 -2.124 1.683 -2.334 -1.472 D 118 116 3 119 3 0 0 98 176 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 2 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - A - - - ML 120 119 3 122 3 1 1 100 178 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 121 119 3 122 3 0 0 96 174 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - - - ML 123 122 3 125 3 1 1 98 176 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 124 122 3 125 3 0 0 95 172 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - G - - - ML 126 125 3 128 3 1 1 97 174 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 127 125 3 128 3 0 0 93 171 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - C - - - ML 129 128 3 131 3 1 1 95 173 -5.672 -0.058 -5.672 -2.124 1.683 -2.334 -1.472 D 130 128 3 131 3 0 0 92 169 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - C - - - ML 132 131 3 134 3 1 1 94 171 -5.672 -0.058 -5.672 -0.996 1.007 -0.528 -0.331 D 133 131 3 134 3 0 0 90 167 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - - - ML 135 134 3 137 3 1 1 92 169 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 136 134 3 137 3 0 0 89 165 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - C - - - ML 138 137 3 140 3 1 1 91 168 -5.672 -0.058 -5.672 -2.124 1.683 -2.334 -1.472 D 139 137 3 140 3 0 0 87 164 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - a - - - ML 141 140 3 143 3 1 1 89 166 -5.672 -0.058 -5.672 0.406 -0.511 0.364 -0.543 D 142 140 3 143 3 0 0 86 162 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - U - - - ML 144 143 3 146 3 1 1 88 164 -5.672 -0.058 -5.672 -1.406 -0.572 -1.590 1.388 D 145 143 3 146 3 0 0 84 160 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - C - - - ML 147 146 3 149 3 1 1 86 162 -5.672 -0.058 -5.672 -2.124 1.683 -2.334 -1.472 D 148 146 3 149 3 0 0 83 158 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 150 149 3 152 3 1 1 85 160 -5.672 -0.058 -5.672 1.387 -1.623 -0.611 -1.301 D 151 149 3 152 3 0 0 81 156 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - U - - - ML 153 152 3 155 3 1 1 83 159 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 154 152 3 155 3 0 0 79 155 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - A - - - ML 156 155 3 158 3 1 1 81 157 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 157 155 3 158 3 0 0 78 153 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - A - - - ML 159 158 3 161 3 1 1 80 155 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 160 158 3 161 3 0 0 76 151 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - A - - - ML 162 161 3 164 3 1 1 78 153 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 163 161 3 164 3 0 0 75 149 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - G - - - ML 165 164 3 167 3 1 1 77 151 -5.672 -0.058 -5.672 -0.784 -2.085 1.530 -1.757 D 166 164 3 167 3 0 0 73 147 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - A - - - ML 168 167 3 170 3 1 1 75 149 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 169 167 3 170 3 0 0 71 145 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - U - - - ML 171 170 3 173 3 1 1 73 147 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 172 170 3 173 3 0 0 69 143 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - G - - - ML 174 173 3 176 3 1 1 72 145 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 175 173 3 176 3 0 0 68 141 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 62 - G - - - ML 177 176 3 179 3 1 1 70 143 -5.672 -0.058 -5.672 -0.319 -0.732 1.030 -0.850 D 178 176 3 179 3 0 0 66 139 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 63 - A - - - ML 180 179 3 182 3 1 1 68 141 -5.672 -0.058 -5.672 1.399 -1.638 -0.643 -1.318 D 181 179 3 182 3 0 0 64 136 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 64 - G - - - ML 183 182 3 185 3 1 1 66 139 -5.672 -0.058 -5.672 -0.896 -2.148 1.563 -1.825 D 184 182 3 185 3 0 0 62 134 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 65 - A - - - ML 186 185 3 188 3 1 1 64 136 -5.672 -0.058 -5.672 1.197 -0.470 -1.197 -0.864 D 187 185 3 188 3 0 0 60 131 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 73 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 66 - U - - - ML 189 188 3 191 3 1 1 62 134 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 190 188 3 191 3 0 0 58 129 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 67 - G - - - ML 192 191 3 194 3 1 1 60 131 -5.672 -0.058 -5.672 -1.887 -2.699 1.761 -2.419 D 193 191 3 194 3 0 0 55 126 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 68 - A - - - ML 195 194 3 197 3 1 1 58 129 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 196 194 3 197 3 0 0 52 123 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 69 - U - - - ML 198 197 3 200 3 1 1 55 126 -5.672 -0.058 -5.672 -1.862 -1.501 -2.030 1.645 D 199 197 3 200 3 0 0 49 119 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 70 - A - - - ML 201 200 3 203 3 1 1 52 122 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 202 200 3 203 3 0 0 44 114 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 71 - A - - - ML 204 203 3 206 3 1 1 48 117 -5.672 -0.058 -5.672 1.756 -2.438 -2.176 -2.200 D 205 203 3 206 3 0 0 32 101 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 72 - G - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -1.887 -2.699 1.761 -2.419 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME HOTAIR_2 ACC RF01905 DESC HOTAIR conserved region 2 LENG 69 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Wed Mar 5 13:57:10 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 11 EFFN 2.897705 STATS LOCAL MSV -8.5834 0.71873 STATS LOCAL VITERBI -9.0763 0.71873 STATS LOCAL FORWARD -3.4898 0.71873 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23238 1.67196 1.25971 1.44059 1.38629 1.38629 1.38629 1.38629 0.02364 5.05888 4.07371 0.39730 1.11515 0.00000 * 1 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 2 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 3 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 4 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 5 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 6 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 7 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 8 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 9 2.06462 2.09505 1.55232 0.61931 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 10 1.95048 2.84326 0.31950 2.61667 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 11 1.72024 2.13033 2.27153 0.51245 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 12 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 13 1.81379 0.75441 2.19088 1.36704 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 14 1.58210 2.17338 0.72951 1.61688 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 15 1.63591 1.65086 1.73364 0.82851 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 16 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 17 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 18 2.54477 0.39198 2.69006 1.72645 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 19 2.48971 0.43867 2.63133 1.60849 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 20 0.48299 2.44847 1.67180 2.21891 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 21 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.09541 3.93138 2.63975 1.46634 0.26236 1.09861 0.40547 22 1.76628 0.67706 2.19655 1.56190 - C - - : 1.38629 1.38629 1.38629 1.38629 0.12356 3.87823 2.34813 1.46634 0.26236 0.43803 1.03650 23 2.23924 1.68749 2.35954 0.48774 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04315 3.85774 3.85774 1.46634 0.26236 1.88989 0.16380 24 1.81756 0.64358 2.21969 1.59194 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04315 3.85775 3.85775 1.46634 0.26236 1.88989 0.16380 25 1.62803 2.01037 0.92362 1.29951 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04315 3.85775 3.85775 1.46634 0.26236 0.35979 1.19674 26 2.85844 0.21950 3.00398 2.40645 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 27 2.31215 1.64120 2.43824 0.47821 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 28 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 29 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 30 1.76285 1.64317 2.12536 0.66225 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 31 2.40680 0.42698 1.99264 2.11124 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 32 1.75776 1.72693 2.13901 0.63117 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 33 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 34 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 35 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 36 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 37 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.10952 2.47553 3.93138 1.10655 0.40152 1.09861 0.40547 38 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 39 2.85844 0.21950 3.00398 2.40645 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 40 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 41 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 42 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 43 2.85844 0.21950 3.00398 2.40645 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 44 2.07652 0.68823 1.75221 1.61555 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 45 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 46 2.85844 0.21950 3.00398 2.40645 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 47 1.10504 1.74032 1.13387 1.76287 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 48 2.36112 1.78245 2.48843 0.42400 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 49 2.85844 0.21950 3.00398 2.40645 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 50 0.42512 2.51126 1.80993 2.28791 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 51 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 52 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 53 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 54 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 55 1.92951 2.83152 0.32590 2.60400 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 56 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 57 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 58 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 59 1.60747 1.89400 0.67243 1.97563 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 60 0.41649 2.52198 1.83225 2.29971 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 61 2.00767 2.87517 0.30283 2.65119 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 62 0.55663 1.71205 2.21613 1.98533 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 63 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 64 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 65 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 66 2.67674 2.42671 2.79346 0.24631 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 67 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 68 0.16945 3.07624 2.89435 2.91133 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93138 3.93138 1.46634 0.26236 1.09861 0.40547 69 2.69393 3.25738 0.16590 3.06270 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //