INFERNAL1/a [1.1.5 | Sep 2023] NAME HOTAIR_2 ACC RF01905 DESC HOTAIR conserved region 2 STATES 211 NODES 71 CLEN 69 W 152 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 00:08:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01905/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 2.903076 CKSUM 1997375915 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 63.40 NC 54.80 EFP7GF -9.8556 0.71876 ECMLC 0.65074 -10.51601 -0.26721 1600000 945377 0.001269 ECMGC 0.39827 -19.48809 -5.61403 1600000 100418 0.003983 ECMLI 0.64658 -8.23449 1.13153 1600000 511954 0.002344 ECMGI 0.45388 -10.37276 0.75413 1600000 62428 0.006407 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 152 236 -7.300 -7.507 -0.041 -5.921 IL 1 1 2 1 4 1 26 154 238 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 154 238 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 25 152 236 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 4 2 3 5 3 0 20 149 233 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 27 159 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 24 151 235 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 7 5 3 8 3 0 20 148 232 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 26 157 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 24 150 234 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 10 8 3 11 3 0 19 146 230 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 25 156 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 23 148 232 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 13 11 3 14 3 0 18 145 229 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 24 155 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 22 147 231 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 16 14 3 17 3 0 17 144 227 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 24 153 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 21 146 229 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 19 17 3 20 3 0 17 143 226 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 23 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 21 144 228 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 22 20 3 23 3 0 16 141 224 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 22 151 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 20 143 226 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 25 23 3 26 3 0 15 140 223 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 21 149 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 19 142 225 -5.673 -0.058 -5.673 -1.028 -1.048 -0.365 1.170 D 28 26 3 29 3 0 15 139 222 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 21 148 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 18 140 223 -5.673 -0.058 -5.673 -0.794 -2.093 1.534 -1.765 D 31 29 3 32 3 0 14 137 220 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 20 147 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 18 139 222 -5.673 -0.058 -5.673 -0.458 -1.069 -1.266 1.251 D 34 32 3 35 3 0 13 136 219 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 19 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 17 138 221 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 37 35 3 38 3 0 12 135 217 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 19 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 1 16 136 219 -5.673 -0.058 -5.673 -0.619 0.964 -1.189 -0.059 D 40 38 3 41 3 0 12 133 216 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 18 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - g - - - ML 42 41 3 44 3 1 15 135 218 -5.673 -0.058 -5.673 -0.260 -1.116 0.921 -0.304 D 43 41 3 44 3 0 11 132 214 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 17 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 45 44 3 47 3 1 15 134 216 -5.673 -0.058 -5.673 -0.346 -0.370 -0.487 0.787 D 46 44 3 47 3 0 10 131 213 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 16 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 48 47 3 50 3 1 14 132 215 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 49 47 3 50 3 0 10 129 211 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 15 139 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 51 50 3 53 3 1 13 131 213 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 52 50 3 53 3 0 9 128 210 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 15 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 12 130 212 -5.673 -0.058 -5.673 -1.665 1.428 -1.874 -0.472 D 55 53 3 56 3 0 9 127 208 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 14 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 11 128 210 -5.673 -0.058 -5.673 -1.584 1.358 -1.788 -0.299 D 58 56 3 59 3 0 8 125 207 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 13 135 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 10 127 209 -5.673 -0.058 -5.673 1.291 -1.522 -0.383 -1.190 D 61 59 3 62 3 0 7 124 205 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 12 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 10 126 207 -5.673 -0.141 -3.769 -1.889 -2.703 1.761 -2.422 D 64 62 3 65 3 0 7 123 204 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 11 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 9 124 206 -5.594 -0.183 -3.342 -0.522 1.002 -1.148 -0.234 D 67 65 3 68 3 0 6 122 203 -12.488 -0.618 -1.522 IL 68 68 3 68 3 1 11 131 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 9 123 204 -5.563 -0.062 -5.563 -1.221 -0.415 -1.394 1.287 D 70 68 3 71 3 0 5 119 200 -12.724 -2.758 -0.231 IL 71 71 3 71 3 1 11 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 1 8 122 203 -5.563 -0.062 -5.563 -0.595 1.050 -1.180 -0.277 D 73 71 3 74 3 0 4 119 199 -12.724 -2.758 -0.231 IL 74 74 3 74 3 1 10 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - g - - - ML 75 74 3 77 3 1 8 121 201 -5.563 -0.062 -5.563 -0.347 -0.924 0.720 0.056 D 76 74 3 77 3 0 4 118 199 -12.724 -0.506 -1.758 IL 77 77 3 77 3 1 9 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 78 77 3 80 3 1 7 119 200 -5.673 -0.058 -5.673 -2.127 1.684 -2.337 -1.474 D 79 77 3 80 3 0 2 116 196 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 9 126 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - U - - - ML 81 80 3 83 3 1 6 118 198 -5.673 -0.058 -5.673 -1.332 -0.348 -1.513 1.303 D 82 80 3 83 3 0 2 114 195 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 8 125 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 84 83 3 86 3 1 6 116 197 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 85 83 3 86 3 0 1 113 193 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 7 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 87 86 3 89 3 1 5 115 195 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 88 86 3 89 3 0 1 112 191 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 7 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 5 114 193 -5.673 -0.058 -5.673 -0.525 -0.355 -1.056 1.030 D 91 89 3 92 3 0 0 110 190 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 6 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 4 112 192 -5.673 -0.058 -5.673 -1.460 1.375 -0.847 -1.039 D 94 92 3 95 3 0 0 109 188 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 6 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 4 111 190 -5.673 -0.058 -5.673 -0.517 -0.478 -1.075 1.076 D 97 95 3 98 3 0 0 108 187 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 5 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 99 98 3 101 3 1 3 109 189 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 100 98 3 101 3 0 0 106 185 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 5 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 102 101 3 104 3 1 3 108 187 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 103 101 3 104 3 0 0 105 183 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 4 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 105 104 3 107 3 1 2 107 186 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 106 104 3 107 3 0 0 103 182 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 4 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - U - - - ML 108 107 3 110 3 1 2 105 184 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 109 107 3 110 3 0 0 102 180 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 3 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 111 110 3 113 3 1 2 104 182 -3.944 -0.127 -5.673 1.756 -2.442 -2.179 -2.204 D 112 110 3 113 3 0 0 100 179 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 3 107 185 -0.577 -1.601 -12.815 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - A - - - ML 114 113 3 116 3 1 1 102 181 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 115 113 3 116 3 0 0 99 177 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 3 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - C - - - ML 117 116 3 119 3 1 1 101 179 -5.673 -0.058 -5.673 -2.127 1.684 -2.337 -1.474 D 118 116 3 119 3 0 0 98 176 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 2 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - A - - - ML 120 119 3 122 3 1 1 100 178 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 121 119 3 122 3 0 0 96 174 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 2 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - - - ML 123 122 3 125 3 1 1 98 176 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 124 122 3 125 3 0 0 95 172 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 2 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - G - - - ML 126 125 3 128 3 1 1 97 174 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 127 125 3 128 3 0 0 93 171 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 104 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - C - - - ML 129 128 3 131 3 1 1 95 173 -5.673 -0.058 -5.673 -2.127 1.684 -2.337 -1.474 D 130 128 3 131 3 0 0 92 169 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - c - - - ML 132 131 3 134 3 1 1 94 171 -5.673 -0.058 -5.673 -0.980 0.988 -0.503 -0.315 D 133 131 3 134 3 0 0 90 167 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 101 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - - - ML 135 134 3 137 3 1 1 92 169 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 136 134 3 137 3 0 0 89 165 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - C - - - ML 138 137 3 140 3 1 1 91 167 -5.673 -0.058 -5.673 -2.127 1.684 -2.337 -1.474 D 139 137 3 140 3 0 0 87 164 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - a - - - ML 141 140 3 143 3 1 1 89 166 -5.673 -0.058 -5.673 0.440 -0.486 0.307 -0.530 D 142 140 3 143 3 0 0 86 162 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - U - - - ML 144 143 3 146 3 1 1 88 164 -5.673 -0.058 -5.673 -1.402 -0.556 -1.586 1.383 D 145 143 3 146 3 0 0 84 160 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 95 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - C - - - ML 147 146 3 149 3 1 1 86 162 -5.673 -0.058 -5.673 -2.127 1.684 -2.337 -1.474 D 148 146 3 149 3 0 0 83 158 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 150 149 3 152 3 1 1 85 160 -5.673 -0.058 -5.673 1.376 -1.612 -0.584 -1.288 D 151 149 3 152 3 0 0 81 156 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - U - - - ML 153 152 3 155 3 1 1 83 159 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 154 152 3 155 3 0 0 79 155 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - A - - - ML 156 155 3 158 3 1 1 81 157 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 157 155 3 158 3 0 0 78 153 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - A - - - ML 159 158 3 161 3 1 1 80 155 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 160 158 3 161 3 0 0 76 151 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - A - - - ML 162 161 3 164 3 1 1 78 153 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 163 161 3 164 3 0 0 75 149 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - G - - - ML 165 164 3 167 3 1 1 77 151 -5.673 -0.058 -5.673 -0.764 -2.076 1.524 -1.747 D 166 164 3 167 3 0 0 73 147 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - A - - - ML 168 167 3 170 3 1 1 75 149 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 169 167 3 170 3 0 0 71 145 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - U - - - ML 171 170 3 173 3 1 1 73 147 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 172 170 3 173 3 0 0 69 143 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - G - - - ML 174 173 3 176 3 1 1 72 145 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 175 173 3 176 3 0 0 68 141 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 62 - G - - - ML 177 176 3 179 3 1 1 70 143 -5.673 -0.058 -5.673 -0.297 -0.704 1.007 -0.831 D 178 176 3 179 3 0 0 66 139 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 78 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 63 - A - - - ML 180 179 3 182 3 1 1 68 141 -5.673 -0.058 -5.673 1.389 -1.627 -0.616 -1.305 D 181 179 3 182 3 0 0 64 136 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 64 - G - - - ML 183 182 3 185 3 1 1 66 139 -5.673 -0.058 -5.673 -0.878 -2.140 1.558 -1.816 D 184 182 3 185 3 0 0 62 134 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 75 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 65 - A - - - ML 186 185 3 188 3 1 1 64 136 -5.673 -0.058 -5.673 1.187 -0.448 -1.192 -0.857 D 187 185 3 188 3 0 0 60 131 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 73 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 66 - U - - - ML 189 188 3 191 3 1 1 62 134 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 190 188 3 191 3 0 0 58 129 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 72 144 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 67 - G - - - ML 192 191 3 194 3 1 1 60 131 -5.673 -0.058 -5.673 -1.889 -2.703 1.761 -2.422 D 193 191 3 194 3 0 0 55 126 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 70 142 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 68 - A - - - ML 195 194 3 197 3 1 1 58 129 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 196 194 3 197 3 0 0 52 123 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 69 - U - - - ML 198 197 3 200 3 1 1 55 126 -5.673 -0.058 -5.673 -1.865 -1.503 -2.033 1.645 D 199 197 3 200 3 0 0 49 119 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 70 - A - - - ML 201 200 3 203 3 1 1 52 122 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 202 200 3 203 3 0 0 44 114 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 71 - A - - - ML 204 203 3 206 3 1 1 48 117 -5.673 -0.058 -5.673 1.756 -2.442 -2.179 -2.204 D 205 203 3 206 3 0 0 32 101 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 72 - G - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -1.889 -2.703 1.761 -2.422 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME HOTAIR_2 ACC RF01905 DESC HOTAIR conserved region 2 LENG 69 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Jul 11 00:08:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01905/CM NSEQ 11 EFFN 2.903076 CKSUM 1997375915 STATS LOCAL MSV -8.5469 0.71876 STATS LOCAL VITERBI -9.0709 0.71876 STATS LOCAL FORWARD -3.4850 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23133 1.67203 1.26039 1.44102 1.38629 1.38629 1.38629 1.38629 0.02362 5.06008 4.07490 0.39730 1.11515 0.00000 * 1 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 2 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 3 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 4 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 5 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 6 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 7 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 8 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 9 2.09872 2.11271 1.63933 0.57560 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 10 1.93696 2.83715 0.32334 2.60994 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 11 1.70390 2.12706 2.26415 0.51932 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 12 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 13 1.81538 0.71842 2.21016 1.42704 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 14 1.56680 2.16005 0.74771 1.59693 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 15 1.62614 1.64249 1.72375 0.84068 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 16 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 17 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 18 2.54008 0.39653 2.68506 1.71330 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 19 2.48415 0.44477 2.62538 1.59346 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 20 0.49150 2.44134 1.65209 2.21093 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 21 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.09758 3.93243 2.61223 1.46634 0.26236 1.09861 0.40547 22 1.74827 0.69207 2.18223 1.54835 - C - - : 1.38629 1.38629 1.38629 1.38629 0.12710 3.87715 2.31622 1.46634 0.26236 0.42799 1.05504 23 2.23249 1.67392 2.35256 0.49413 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04323 3.85582 3.85582 1.46634 0.26236 1.91151 0.16000 24 1.79890 0.65819 2.20422 1.57795 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04323 3.85582 3.85582 1.46634 0.26236 1.91151 0.16000 25 1.62685 2.02681 0.88741 1.34716 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04323 3.85582 3.85582 1.46634 0.26236 0.35057 1.21836 26 2.86063 0.21899 3.00630 2.40831 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 27 2.30923 1.62781 2.43528 0.48332 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 28 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 29 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 30 1.75026 1.63265 2.11792 0.67221 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 31 2.39854 0.43311 1.97351 2.10625 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 32 1.74464 1.71791 2.13128 0.64024 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 33 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 34 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 35 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 36 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 37 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.08834 2.73402 3.93243 1.10978 0.39993 1.09861 0.40547 38 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 39 2.86063 0.21899 3.00630 2.40831 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 40 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 41 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 42 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 43 2.86063 0.21899 3.00630 2.40831 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 44 2.06582 0.70147 1.73470 1.60456 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 45 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 46 2.86063 0.21899 3.00630 2.40831 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 47 1.08147 1.72317 1.17339 1.75395 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 48 2.35841 1.77167 2.48572 0.42753 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 49 2.86063 0.21899 3.00630 2.40831 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 50 0.43222 2.50354 1.79106 2.27929 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 51 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 52 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 53 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 54 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 55 1.91575 2.82526 0.32991 2.59713 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 56 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 57 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 58 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 59 1.59234 1.87461 0.68799 1.96218 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 60 0.42337 2.51422 1.81353 2.29103 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 61 1.99480 2.86946 0.30623 2.64486 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 62 0.56331 1.69706 2.21247 1.98032 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 63 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 64 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 65 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 66 2.67884 2.42844 2.79565 0.24576 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 67 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 68 0.16895 3.07894 2.89698 2.91411 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03998 3.93243 3.93243 1.46634 0.26236 1.09861 0.40547 69 2.69557 3.25969 0.16553 3.06504 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //