INFERNAL1/a [1.1.5 | Sep 2023] NAME HSR-omega_1 ACC RF01885 DESC Heat shock gene hsromega conserved region 1 STATES 238 NODES 80 CLEN 78 W 166 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 19:43:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01885/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 13 EFFN 2.351807 CKSUM 4001469451 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 83.70 NC 37.80 EFP7GF -8.4843 0.71859 ECMLC 0.60047 -10.15685 -0.43710 1600000 411056 0.002919 ECMGC 0.36641 -17.17482 -3.23346 1600000 66155 0.006046 ECMLI 0.46204 -9.61130 2.06834 1600000 264737 0.004533 ECMGI 0.44297 -7.21156 3.65088 1600000 49179 0.008134 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 166 252 -7.111 -7.318 -0.114 -3.998 IL 1 1 2 1 4 4 33 168 254 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 4 32 167 254 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 4 32 166 253 -5.453 -0.067 -5.453 1.628 -1.901 -1.638 -1.646 D 4 2 3 5 3 0 28 164 250 -12.207 -0.794 -1.241 IL 5 5 3 5 3 5 33 172 259 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 3 31 165 251 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 7 5 3 8 3 0 26 161 248 -11.551 -1.585 -0.585 IL 8 8 3 8 3 4 33 171 258 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 3 30 163 250 -5.508 -0.065 -5.508 0.681 0.234 -0.896 -0.549 D 10 8 3 11 3 0 26 160 246 -11.551 -1.585 -0.585 IL 11 11 3 11 3 4 32 169 256 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 3 29 162 248 -5.508 -0.065 -5.508 0.665 0.255 -0.897 -0.547 D 13 11 3 14 3 0 25 159 245 -11.551 -1.585 -0.585 IL 14 14 3 14 3 4 31 168 255 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - c - - - ML 15 14 3 17 3 2 29 161 247 -5.508 -0.065 -5.508 -0.635 0.413 0.099 -0.069 D 16 14 3 17 3 0 24 158 243 -11.551 -1.585 -0.585 IL 17 17 3 17 3 3 30 167 254 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 2 28 159 245 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 19 17 3 20 3 0 23 156 242 -11.551 -1.585 -0.585 IL 20 20 3 20 3 3 30 166 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 2 27 158 244 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 22 20 3 23 3 0 23 155 240 -11.551 -1.585 -0.585 IL 23 23 3 23 3 3 29 164 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 2 27 157 242 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 25 23 3 26 3 0 22 154 239 -11.551 -1.585 -0.585 IL 26 26 3 26 3 2 28 163 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 26 155 241 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 28 26 3 29 3 0 21 152 238 -11.551 -1.585 -0.585 IL 29 29 3 29 3 2 28 162 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 25 154 240 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 31 29 3 32 3 0 21 151 236 -11.551 -1.585 -0.585 IL 32 32 3 32 3 2 27 160 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 24 153 238 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 34 32 3 35 3 0 20 150 235 -11.551 -1.585 -0.585 IL 35 35 3 35 3 2 26 159 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 24 152 237 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 37 35 3 38 3 0 19 148 233 -11.551 -1.585 -0.585 IL 38 38 3 38 3 2 25 158 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 23 150 235 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 40 38 3 41 3 0 18 147 232 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 25 156 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 22 149 234 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 43 41 3 44 3 0 18 146 230 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 24 155 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 45 44 3 47 3 1 22 148 232 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 46 44 3 47 3 0 17 144 229 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 23 154 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 21 146 231 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 49 47 3 50 3 0 16 143 227 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 23 152 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 20 145 229 -5.508 -0.065 -5.508 1.232 -1.116 -1.076 -0.484 D 52 50 3 53 3 0 16 142 226 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 22 151 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 20 144 228 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 55 53 3 56 3 0 15 140 224 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 21 150 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 19 142 226 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 58 56 3 59 3 0 14 139 223 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 21 149 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 18 141 225 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 61 59 3 62 3 0 14 138 221 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 20 147 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 18 140 223 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 64 62 3 65 3 0 13 136 220 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 19 146 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 17 138 222 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 67 65 3 68 3 0 12 135 218 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 19 145 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 69 68 3 71 3 1 16 137 220 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 70 68 3 71 3 0 12 134 217 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 18 143 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 16 136 219 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 73 71 3 74 3 0 11 132 215 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 17 142 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 15 134 217 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 76 74 3 77 3 0 11 131 214 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 17 141 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 78 77 3 80 3 1 14 133 216 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 79 77 3 80 3 0 10 130 212 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 16 139 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 81 80 3 83 3 1 14 131 214 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 82 80 3 83 3 0 9 128 211 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 15 138 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 84 83 3 86 3 1 13 130 213 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 85 83 3 86 3 0 9 127 209 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 15 137 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 13 129 211 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 88 86 3 89 3 0 8 126 208 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 14 135 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 12 127 210 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 91 89 3 92 3 0 8 124 206 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 14 134 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 11 126 208 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 94 92 3 95 3 0 7 123 205 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 13 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 11 125 207 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 97 95 3 98 3 0 6 121 203 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 12 131 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 99 98 3 101 3 1 10 123 205 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 100 98 3 101 3 0 6 120 202 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 12 130 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 102 101 3 104 3 1 10 122 204 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 103 101 3 104 3 0 6 119 200 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 11 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 105 104 3 107 3 1 9 121 202 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 106 104 3 107 3 0 5 117 198 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 11 127 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 9 119 200 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 109 107 3 110 3 0 4 116 197 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 10 126 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - A - - - ML 111 110 3 113 3 1 8 118 199 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 112 110 3 113 3 0 4 114 195 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 10 124 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - - - ML 114 113 3 116 3 1 8 116 197 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 115 113 3 116 3 0 4 113 194 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 9 123 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 117 116 3 119 3 1 7 115 196 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 118 116 3 119 3 0 3 112 192 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 9 122 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - U - - - ML 120 119 3 122 3 1 7 114 194 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 121 119 3 122 3 0 3 110 190 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 8 120 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 123 122 3 125 3 1 6 112 192 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 124 122 3 125 3 0 2 109 189 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 8 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - A - - - ML 126 125 3 128 3 1 6 111 191 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 127 125 3 128 3 0 2 107 187 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 7 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - U - - - ML 129 128 3 131 3 1 5 109 189 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 130 128 3 131 3 0 1 106 186 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 7 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - A - - - ML 132 131 3 134 3 1 5 108 188 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 133 131 3 134 3 0 1 105 184 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 6 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - G - - - ML 135 134 3 137 3 1 4 106 186 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 136 134 3 137 3 0 1 103 182 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 5 113 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - U - - - ML 138 137 3 140 3 1 4 105 184 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 139 137 3 140 3 0 0 102 181 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 5 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 141 140 3 143 3 1 3 104 183 -5.508 -0.123 -4.061 -1.547 -1.241 -1.701 1.549 D 142 140 3 143 3 0 0 101 179 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 5 111 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - G - - - ML 144 143 3 146 3 1 3 102 181 -5.453 -0.067 -5.453 -1.542 -2.214 1.668 -1.927 D 145 143 3 146 3 0 0 99 178 -12.207 -0.794 -1.241 IL 146 146 3 146 3 1 4 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - G - - - ML 147 146 3 149 3 1 2 101 179 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 148 146 3 149 3 0 0 97 176 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 4 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - G - - - ML 150 149 3 152 3 1 2 99 178 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 151 149 3 152 3 0 0 96 174 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 3 106 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - C - - - ML 153 152 3 155 3 1 2 98 176 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 154 152 3 155 3 0 0 94 172 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 3 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - G - - - ML 156 155 3 158 3 1 2 96 174 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 157 155 3 158 3 0 0 93 170 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 3 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - U - - - ML 159 158 3 161 3 1 1 95 173 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 160 158 3 161 3 0 0 91 169 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 2 102 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - U - - - ML 162 161 3 164 3 1 1 93 171 -5.508 -0.065 -5.508 -1.040 -0.978 -0.700 1.257 D 163 161 3 164 3 0 0 90 167 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 2 100 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - G - - - ML 165 164 3 167 3 1 1 92 169 -5.508 -0.065 -5.508 -0.773 -1.857 1.482 -1.532 D 166 164 3 167 3 0 0 88 165 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 2 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 168 167 3 170 3 1 1 90 167 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 169 167 3 170 3 0 0 87 163 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 2 98 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - A - - - ML 171 170 3 173 3 1 1 89 166 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 172 170 3 173 3 0 0 85 162 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 96 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 174 173 3 176 3 1 1 87 164 -5.508 -0.065 -5.508 1.220 -1.103 -1.064 -0.460 D 175 173 3 176 3 0 0 83 160 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - G - - - ML 177 176 3 179 3 1 1 85 162 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 178 176 3 179 3 0 0 82 158 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - U - - - ML 180 179 3 182 3 1 1 84 160 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 181 179 3 182 3 0 0 80 156 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - U - - - ML 183 182 3 185 3 1 1 82 158 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 184 182 3 185 3 0 0 79 154 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 90 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - G - - - ML 186 185 3 188 3 1 1 81 156 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 187 185 3 188 3 0 0 77 152 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 88 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - A - - - ML 189 188 3 191 3 1 1 79 154 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 190 188 3 191 3 0 0 75 150 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - U - - - ML 192 191 3 194 3 1 1 77 152 -5.508 -0.065 -5.508 -1.547 -1.241 -1.701 1.549 D 193 191 3 194 3 0 0 74 148 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 85 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - A - - - ML 195 194 3 197 3 1 1 76 150 -5.508 -0.065 -5.508 1.665 -2.033 -1.772 -1.782 D 196 194 3 197 3 0 0 72 146 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - c - - - ML 198 197 3 200 3 1 1 74 148 -5.508 -0.311 -2.541 -1.136 0.963 -1.311 0.254 D 199 197 3 200 3 0 0 71 145 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 82 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - G - - - ML 201 200 3 203 3 1 1 72 147 -5.274 -0.077 -5.274 -1.261 -1.823 1.563 -1.531 D 202 200 3 203 3 0 0 70 144 -13.262 -0.329 -2.296 IL 203 203 3 203 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - C - - - ML 204 203 3 206 3 1 1 71 144 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 205 203 3 206 3 0 0 67 140 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 79 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - G - - - ML 207 206 3 209 3 1 1 69 142 -5.508 -0.065 -5.508 -0.434 -1.668 1.349 -1.328 D 208 206 3 209 3 0 0 65 137 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 77 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 70 - A - - - ML 210 209 3 212 3 1 1 67 140 -5.508 -0.402 -2.178 1.223 -1.106 -1.067 -0.465 D 211 209 3 212 3 0 0 63 135 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 71 - u - - - ML 213 212 3 215 3 1 1 65 138 -5.188 -0.081 -5.188 0.172 -0.562 -0.155 0.376 D 214 212 3 215 3 0 0 61 133 -13.558 -2.022 -0.408 IL 215 215 3 215 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 72 - a - - - ML 216 215 3 218 3 1 1 63 135 -5.264 -0.077 -5.264 0.589 0.128 -0.664 -0.373 D 217 215 3 218 3 0 0 60 132 -13.301 -0.319 -2.335 IL 218 218 3 218 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 73 - u - - - ML 219 218 3 221 3 1 1 61 132 -5.508 -0.065 -5.508 -0.788 -0.865 -0.050 0.930 D 220 218 3 221 3 0 0 56 127 -11.551 -1.585 -0.585 IL 221 221 3 221 3 1 1 70 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 74 - C - - - ML 222 221 3 224 3 1 1 58 129 -5.508 -0.065 -5.508 -1.785 1.593 -1.975 -1.186 D 223 221 3 224 3 0 0 53 123 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 68 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 75 - G - - - ML 225 224 3 227 3 1 1 56 126 -5.508 -0.065 -5.508 -1.630 -2.338 1.695 -2.052 D 226 224 3 227 3 0 0 50 119 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 76 - a - - - ML 228 227 3 230 3 1 1 53 123 -5.508 -0.065 -5.508 0.871 -0.875 -0.859 0.104 D 229 227 3 230 3 0 0 45 114 -11.551 -1.585 -0.585 IL 230 230 3 230 3 1 1 64 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 77 - u - - - ML 231 230 3 233 3 1 1 49 118 -5.508 -0.065 -5.508 0.412 -0.805 -0.822 0.615 D 232 230 3 233 3 0 0 32 101 -11.551 -1.585 -0.585 IL 233 233 3 233 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 78 - c - - - ML 234 233 3 236 2 1 1 1 1 * 0.000 -0.489 0.814 -0.284 -0.499 D 235 233 3 236 2 0 0 0 0 * 0.000 IL 236 236 3 236 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 79 ] - - - - - - E 237 236 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME HSR-omega_1 ACC RF01885 DESC Heat shock gene hsromega conserved region 1 LENG 78 MAXL 166 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 6 19:43:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01885/CM NSEQ 13 EFFN 2.351807 CKSUM 4001469451 STATS LOCAL MSV -8.3005 0.71859 STATS LOCAL VITERBI -9.5549 0.71859 STATS LOCAL FORWARD -3.5454 0.71859 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26888 1.57802 1.56020 1.19608 1.38629 1.38629 1.38629 1.38629 0.07300 4.92922 2.76197 0.39730 1.11515 0.00000 * 1 0.25769 2.70381 2.52147 2.52733 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04675 3.77943 3.77943 1.46634 0.26236 0.55008 0.86015 2 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 3 0.91453 1.22398 2.00757 1.76653 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 4 0.92569 1.20927 2.00801 1.76568 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 5 1.82619 1.09984 1.31750 1.43445 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 6 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 7 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 8 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 9 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 10 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 11 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 12 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 13 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 14 2.51623 3.00666 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 15 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 16 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 17 0.53212 2.16014 2.13203 1.72186 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 18 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 19 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 20 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 21 2.51623 3.00667 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 22 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 23 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 24 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 25 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 26 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 27 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 28 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 29 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 30 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 31 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 32 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 33 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 34 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 35 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 36 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 37 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 38 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 39 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 40 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 41 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 42 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 43 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 44 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 45 2.51623 3.00666 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 46 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 47 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.08543 3.81811 2.81489 1.46634 0.26236 1.09861 0.40547 48 2.45511 2.92079 0.23004 2.72181 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04675 3.77943 3.77943 1.46634 0.26236 0.55008 0.86015 49 2.51623 3.00666 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 50 2.51623 3.00666 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 51 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 52 2.51623 3.00666 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 53 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 54 2.10693 2.06441 1.87138 0.51486 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 55 1.92197 2.67329 0.35925 2.44814 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 56 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 57 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 58 0.54085 2.15086 2.12389 1.70487 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 59 2.51623 3.00666 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 60 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 61 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 62 2.51623 3.00666 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 63 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 64 2.45867 2.24624 2.56502 0.31233 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 65 0.23196 2.79512 2.61452 2.62130 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 66 2.17397 0.71859 2.29527 1.21033 - c - - : 1.38629 1.38629 1.38629 1.38629 0.21544 3.81811 1.76118 1.46634 0.26236 1.09861 0.40547 67 2.26024 2.64964 0.30312 2.44779 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05307 3.65574 3.65574 1.46634 0.26236 0.22769 1.59147 68 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 69 1.68736 2.54247 0.45135 2.30706 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 70 0.53892 2.15288 2.12567 1.70860 - A - - : 1.38629 1.38629 1.38629 1.38629 0.27833 3.81811 1.50967 1.46634 0.26236 1.09861 0.40547 71 1.26685 1.77579 1.49391 1.12566 - u - - : 1.38629 1.38629 1.38629 1.38629 0.05642 3.59620 3.59620 1.46634 0.26236 1.40178 0.28257 72 0.97821 1.29748 1.84634 1.64516 - a - - : 1.38629 1.38629 1.38629 1.38629 0.05345 3.64878 3.64878 1.46634 0.26236 0.22091 1.61843 73 1.93241 1.98555 1.42119 0.74135 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 74 2.62390 0.28242 2.75498 2.20808 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 75 2.51623 3.00667 0.21134 2.80875 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 76 0.78267 1.99259 1.98147 1.31450 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 77 1.10089 1.94417 1.95585 0.96005 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04493 3.81811 3.81811 1.46634 0.26236 1.09861 0.40547 78 1.72521 0.82179 1.58324 1.73211 - c - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //