# STOCKHOLM 1.0
#=GF ID TUG1_2
#=GF AC RF01883
#=GF DE Taurine upregulated gene 1 conserved region 2
#=GF AU Eberhardt R; 0000-0001-6152-1369
#=GF GA 90.0
#=GF NC 89.9
#=GF TC 90.0
#=GF SE Predicted; CMfinder; Eberhardt R
#=GF SS Predicted; CMfinder;
#=GF TP Gene; lncRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 26.61 -Z 2958934 CM SEQDB
#=GF DR SO; 0001463; lincRNA;
#=GF DR GO; 0042478; regulation of eye photoreceptor cell development;
#=GF RN [1]
#=GF RM 15797018
#=GF RT The noncoding RNA taurine upregulated gene 1 is required for
#=GF RT differentiation of the murine retina.
#=GF RA Young TL, Matsuda T, Cepko CL
#=GF RL Curr Biol. 2005;15:501-512.
#=GF CC TUG1 (taurine upregulated gene 1) is a long non-coding RNA expressed in
#=GF CC retina and brain. It was first identified in a screen for genes
#=GF CC upregulated by in developing retinal cells in response to taurine. It is
#=GF CC required for the normal development of photoreceptors in the retina [1].
#=GF WK TUG1
#=GF SQ 17

AADB02020457.1/3795192-3795278 ---AAAAAG--UGUUGGUCUUUUUGCUCUUUUGUAAUUAAAUCCGGAUGUACCUCAAAAGA--CUU-AA-GACUGUGGUGAU-----AAGAUGCUUUCCUC
ABRN01372171.1/6841-6929       ---AAGAUG--UGUUGGUCUUUUAGCUCUUUUGUAAUUAAAUCUGGAUGUACCUCAAAAGAAUCUU-AA-GACUGUGGUGAU-----AAGAUGCUUUCCUC
AAFC03000995.1/48466-48554     ---CAAAUG--UGUUGGUCUUUUAGCUCUUUUGUAAUUAAAUCUGGAUGUACCUCAAAAGAAUCUU-GA-GACUGUGGUGAU-----ACUAUGCUUUCCUC
ABRP01135829.1/8139-8226       ---AAAAUG--UGUUGGUCUUUUAGGUCUUUUGUAAUUAAAUCUGGAUGUACCUCAAAAGAACAUU-AA-GACUGUGGUGAU-----A-GGUGCUUUCUGC
AAHX01112096.1/12704-12791     ---AAACUG--UGUUGGUCUU--AGCUCUUUUGUAAUUAAAUCUGGAUGUACCUCAAAAGACUCUA-UAAGACUGUGGUGUU-----AAAAGGCUUUCCUC
AAQQ01619694.1/1898-1985       ---AAACUG--UGUUGGUCUUU-AGCUCUUUUGUAAUUAAGUCUGGAUGUACCUCAAAAGAAUCUU-UA-GACUGUGGUGAU-----AAGAGGCUUUCCUC
AAHY01090246.1/37479-37390     -AAAAACUC--UGUUGGUCUU--AGCUCUUUUGUAAUUAAAUCUGGAUGUACCUCAAAAGACUCUU-UAAGACUGUGGUGUU-----AAAAGGCUUUCCUC
AACN010058815.1/1283-1192      ---AAAACG--UGUUGGUCUUUUAGCUCUUUUGUUAUUA--UCUGGAUGUACCUCAAAAGAAUCUU-AA-GACUGUGGUGAUCUUAUAAGAUGCUUUCCUC
AAYZ01038147.1/2826-2914       ---AAAAUG--UGUUGGUCUUUUAGUUGUUUUGUAAUUUAAUCUGGAUGUACCUCAAAAGAACCUU-AA-AAGUGUGGUGAU-----AAGGUGCUUUCCUC
AAWR02038334.1/140369-140284   ---AAAAUG--UGUUGUUCUUUUAGUUCUUUUGUAAU----UCUGGAGGUACCUCAAAAGAAUCUU-AAAGACUGUGGUGAU-----AAGAUGCUUUCCUC
AAKN02007240.1/6723-6638       AGAAAGAUG--U---GUUCUUU-AGCUCUUUUGUAAUUAAAUCUGGAUGUACCUCAA--GACUCUU-AA-GACUGUGGUGAU-----AAGAGGCUUUUCUC
AAPY01652640.1/776-864         ---AAAAUG--UGUUGGUAUUUUAGCUGUUUUGUAAUUAAGUCUGGUUGUACCUCAAAAGAAUCUU-AA-GACUGUGGUGAU-----AAGAUGUUUUCCUU
ACBE01078004.1/8740-8831       -GAGAAGUGAUGGUUGGUCUUUUAGCUCUUUUGUAAUGAAAUCCGGACGCACCUUAAACAAACCUU-AA-GACUGUGGUGU------AAGAUGCUUUCCUC
AC004542.1/125954-126040       ---AAAAAG--UGUUGGUCUUUUUGCUCUUUUGUAAUUAAAUCCGGAUGUACCUCAAAAGA--CUU-AA-GACUGUGGUGAU-----AAGAUGCUUUCCUC
DQ517434.1/508-595             ---AAACUC--UGUUGGUCUU--AGCUCUUUUGUAAUUAAAUCUGGAUGUACCUCAAAAGACUCUUUAA-GACUGUGGUGUU-----AAAAGGCUUUCCUC
DQ517435.1/107-194             ---AAACUC--UGUUGGUCUU--AGCUCUUUUGUAAUUAAAUCUGGAUGUACCUCAAAAGACUCUUUAA-GACUGUGGUGUU-----AAAAGGCUUUCCUC
AAGW02067666.1/32254-32342     ---AAAAUG--UGUUGGUCUUUUUGCUCUUUUGUAAUUAAAUCUGGACGUACCUCAGAAGAAUCUU-GG-AAGUGUGGUGAU-----AAGGUGCUUUCCUC
#=GC SS_cons                   ...::::::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::.::::::::::::.....::::::::::::::
#=GC RF                        ...aAAaUG..UGUUGGUCUUUUAGCUCUUUUGUAAUUAAAUCUGGAuGUACCUCAAAAGAaUCUU.aA.GACUGUGGUGaU.....AAGAuGCUUUCCUC
//
