INFERNAL1/a [1.1.5 | Sep 2023] NAME Xist_exon1 ACC RF01880 DESC X-chromosome inactivation gene exon 1 STATES 259 NODES 87 CLEN 85 W 166 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 18:32:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01880/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 24 EFFN 4.350586 CKSUM 3454454360 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 53.30 NC 41.70 EFP7GF -8.7225 0.71849 ECMLC 0.82300 -7.66146 -0.27734 1600000 522938 0.002295 ECMGC 0.42284 -18.98158 -6.97464 1600000 64121 0.006238 ECMLI 0.73113 -6.82562 1.01732 1600000 371133 0.003233 ECMGI 0.48057 -10.39226 -0.48504 1600000 46750 0.008556 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 166 250 -7.703 -7.910 -0.202 -3.040 IL 1 1 2 1 4 4 35 168 252 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 4 35 168 252 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 4 34 166 250 -5.883 -0.050 -5.883 1.306 -0.897 -1.355 -0.737 D 4 2 3 5 3 0 31 164 248 -13.212 -1.198 -0.826 IL 5 5 3 5 3 5 36 173 258 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 3 33 165 249 -5.958 -0.047 -5.958 1.859 -3.186 -2.883 -2.974 D 7 5 3 8 3 0 30 163 247 -12.633 -0.546 -1.667 IL 8 8 3 8 3 4 35 171 256 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 3 32 164 248 -6.034 -0.045 -6.034 1.640 -2.396 -1.124 -2.094 D 10 8 3 11 3 0 28 161 245 -11.551 -1.585 -0.585 IL 11 11 3 11 3 4 34 170 255 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 2 32 163 246 -6.034 -0.045 -6.034 -1.914 -0.607 -2.124 1.510 D 13 11 3 14 3 0 27 160 243 -11.551 -1.585 -0.585 IL 14 14 3 14 3 3 33 169 254 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 2 31 161 245 -3.986 -0.118 -6.034 -0.368 1.060 -0.748 -0.876 D 16 14 3 17 3 0 26 158 242 -11.551 -1.585 -0.585 IL 17 17 3 17 3 3 31 161 245 -4.086 -0.088 -11.729 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - A - - - ML 18 17 3 20 3 2 30 160 244 -6.034 -0.045 -6.034 1.329 -1.507 -1.606 -0.308 D 19 17 3 20 3 0 26 157 241 -11.551 -1.585 -0.585 IL 20 20 3 20 3 3 32 167 251 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - A - - - ML 21 20 3 23 3 2 29 159 243 -6.034 -0.045 -6.034 1.209 -0.704 -1.336 -0.560 D 22 20 3 23 3 0 25 156 239 -11.551 -1.585 -0.585 IL 23 23 3 23 3 2 31 165 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - A - - - ML 24 23 3 26 3 1 28 158 241 -6.034 -0.045 -6.034 1.877 -3.385 -3.063 -3.180 D 25 23 3 26 3 0 24 155 238 -11.551 -1.585 -0.585 IL 26 26 3 26 3 2 30 164 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - - - ML 27 26 3 29 3 1 27 156 240 -6.034 -0.045 -6.034 1.123 -1.192 -0.784 -0.317 D 28 26 3 29 3 0 23 154 237 -11.551 -1.585 -0.585 IL 29 29 3 29 3 2 29 163 247 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - U - - - ML 30 29 3 32 3 1 27 155 238 -6.034 -0.045 -6.034 -2.614 -2.123 -2.806 1.792 D 31 29 3 32 3 0 23 152 235 -11.551 -1.585 -0.585 IL 32 32 3 32 3 2 28 162 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - C - - - ML 33 32 3 35 3 1 26 154 237 -6.034 -0.045 -6.034 -1.659 1.348 -1.377 -0.412 D 34 32 3 35 3 0 22 151 234 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 27 160 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - C - - - ML 36 35 3 38 3 1 25 153 236 -6.034 -0.123 -3.907 -2.492 1.719 -1.984 -1.852 D 37 35 3 38 3 0 21 150 233 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 27 159 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - g - - - ML 39 38 3 41 3 1 24 152 234 -5.957 -0.047 -5.957 0.499 -1.781 0.944 -1.424 D 40 38 3 41 3 0 21 150 232 -12.637 -0.544 -1.671 IL 41 41 3 41 3 1 26 158 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - A - - - ML 42 41 3 44 3 1 24 150 233 -6.034 -0.045 -6.034 1.877 -3.385 -3.063 -3.180 D 43 41 3 44 3 0 19 147 230 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 25 157 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - C - - - ML 45 44 3 47 3 1 23 149 232 -6.034 -0.045 -6.034 -0.954 1.355 -1.835 -0.631 D 46 44 3 47 3 0 18 146 228 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 24 156 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - C - - - ML 48 47 3 50 3 1 22 148 230 -6.034 -0.045 -6.034 -2.392 1.641 -2.648 -0.912 D 49 47 3 50 3 0 17 145 227 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 24 154 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - C - - - ML 51 50 3 53 3 1 21 147 229 -6.034 -0.045 -6.034 -2.862 1.813 -3.107 -2.106 D 52 50 3 53 3 0 16 143 226 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 23 153 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - C - - - ML 54 53 3 56 3 1 21 145 228 -6.034 -0.045 -6.034 -2.392 1.641 -2.648 -0.912 D 55 53 3 56 3 0 16 142 224 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 22 152 235 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 57 56 3 59 3 1 20 144 226 -6.034 -0.045 -6.034 1.322 -1.500 -1.597 -0.293 D 58 56 3 59 3 0 15 141 223 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 21 151 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - G - - - ML 60 59 3 62 3 1 19 143 225 -6.034 -0.045 -6.034 -2.436 -3.464 1.854 -3.191 D 61 59 3 62 3 0 14 140 222 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 21 149 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - C - - - ML 63 62 3 65 3 1 18 141 223 -6.034 -0.045 -6.034 -1.786 1.461 -1.096 -1.030 D 64 62 3 65 3 0 13 138 220 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 20 148 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - A - - - ML 66 65 3 68 3 1 18 140 222 -6.034 -0.045 -6.034 1.510 -0.920 -1.898 -1.491 D 67 65 3 68 3 0 13 137 219 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 19 147 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - U - - - ML 69 68 3 71 3 1 17 139 221 -6.034 -0.045 -6.034 -0.586 -1.128 -0.615 1.153 D 70 68 3 71 3 0 12 136 217 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 19 146 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 72 71 3 74 3 1 16 138 219 -6.034 -0.045 -6.034 -2.614 -2.123 -2.806 1.792 D 73 71 3 74 3 0 11 135 216 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 18 144 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - A - - - ML 75 74 3 77 3 1 16 136 218 -6.034 -0.045 -6.034 1.619 -2.345 -1.033 -2.039 D 76 74 3 77 3 0 11 133 215 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 17 143 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 78 77 3 80 3 1 15 135 216 -6.034 -0.045 -6.034 -1.067 -2.744 1.672 -2.422 D 79 77 3 80 3 0 10 132 213 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 16 142 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - C - - - ML 81 80 3 83 3 1 14 134 215 -6.034 -0.045 -6.034 -1.536 1.312 -1.006 -0.570 D 82 80 3 83 3 0 9 131 212 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 16 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 1 13 133 214 -6.034 -0.045 -6.034 -1.368 1.477 -2.103 -0.748 D 85 83 3 86 3 0 9 129 210 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 15 139 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - A - - - ML 87 86 3 89 3 1 13 131 212 -6.034 -0.045 -6.034 1.877 -3.385 -3.063 -3.180 D 88 86 3 89 3 0 8 128 209 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 14 138 220 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - c - - - ML 90 89 3 92 3 1 12 130 211 -6.034 -0.045 -6.034 -0.185 0.414 -1.116 0.408 D 91 89 3 92 3 0 7 127 208 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 14 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - G - - - ML 93 92 3 95 3 1 11 129 209 -6.034 -0.045 -6.034 -0.544 -1.013 1.149 -0.735 D 94 92 3 95 3 0 7 126 206 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 13 136 217 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 96 95 3 98 3 1 11 127 208 -6.034 -0.045 -6.034 -0.851 -1.963 1.450 -1.129 D 97 95 3 98 3 0 6 124 205 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 12 134 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 99 98 3 101 3 1 10 126 207 -6.034 -0.045 -6.034 -2.436 -3.464 1.854 -3.191 D 100 98 3 101 3 0 5 123 203 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 12 133 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - G - - - ML 102 101 3 104 3 1 9 125 205 -6.034 -0.045 -6.034 -0.863 -2.010 1.470 -1.215 D 103 101 3 104 3 0 5 122 202 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 11 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 105 104 3 107 3 1 9 124 204 -6.034 -0.045 -6.034 -2.614 -2.123 -2.806 1.792 D 106 104 3 107 3 0 4 120 200 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 10 130 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - A - - - ML 108 107 3 110 3 1 8 122 202 -6.034 -0.045 -6.034 1.087 -1.197 -0.419 -0.532 D 109 107 3 110 3 0 4 119 199 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 9 129 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 111 110 3 113 3 1 7 121 201 -6.034 -0.045 -6.034 -0.420 -1.190 1.277 -1.353 D 112 110 3 113 3 0 3 118 197 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 9 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - g - - - ML 114 113 3 116 3 1 7 120 199 -6.034 -0.045 -6.034 0.061 -1.448 0.993 -0.736 D 115 113 3 116 3 0 2 116 196 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 8 127 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 117 116 3 119 3 1 6 118 198 -4.960 -0.070 -6.034 -1.702 0.123 -1.900 1.224 D 118 116 3 119 3 0 2 115 195 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 7 120 199 -0.921 -1.085 -11.271 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - G - - - ML 120 119 3 122 3 1 5 117 197 -6.034 -0.123 -3.907 -0.760 -1.551 1.206 -0.394 D 121 119 3 122 3 0 1 113 193 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 7 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - u - - - ML 123 122 3 125 3 1 5 116 196 -5.957 -0.047 -5.957 -0.070 -0.491 -0.562 0.729 D 124 122 3 125 3 0 1 111 190 -12.637 -2.671 -0.247 IL 125 125 3 125 3 1 7 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - U - - - ML 126 125 3 128 3 1 5 115 194 -5.957 -0.139 -3.723 -1.410 -1.382 -0.584 1.363 D 127 125 3 128 3 0 1 110 189 -12.637 -2.671 -0.247 IL 128 128 3 128 3 1 7 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - C - - - ML 129 128 3 131 3 1 5 114 193 -5.869 -0.050 -5.869 -2.029 1.542 -2.262 -0.656 D 130 128 3 131 3 0 0 109 187 -13.298 -3.332 -0.151 IL 131 131 3 131 3 1 7 121 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - C - - - ML 132 131 3 134 3 1 4 112 191 -5.869 -0.050 -5.869 -1.781 1.486 -0.978 -1.323 D 133 131 3 134 3 0 0 108 186 -13.298 -3.332 -0.151 IL 134 134 3 134 3 1 6 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - - - ML 135 134 3 137 3 1 4 111 190 -5.869 -0.050 -5.869 -0.774 -1.349 -1.641 1.434 D 136 134 3 137 3 0 0 107 186 -13.298 -3.332 -0.151 IL 137 137 3 137 3 1 5 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - c - - - ML 138 137 3 140 3 1 3 110 188 -5.869 -0.226 -2.965 -0.971 0.823 -0.099 -0.344 D 139 137 3 140 3 0 0 107 185 -13.298 -1.206 -0.820 IL 140 140 3 140 3 1 6 117 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - U - - - ML 141 140 3 143 3 1 4 108 187 -5.790 -0.053 -5.790 -1.658 -0.825 -1.854 1.507 D 142 140 3 143 3 0 0 106 184 -13.687 -0.751 -1.302 IL 143 143 3 143 3 1 5 116 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - u - - - ML 144 143 3 146 3 1 4 107 185 -5.958 -0.047 -5.958 -0.290 -0.774 -0.113 0.742 D 145 143 3 146 3 0 0 102 180 -12.633 -2.667 -0.247 IL 146 146 3 146 3 1 5 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - G - - - ML 147 146 3 149 3 1 3 106 184 -5.958 -0.047 -5.958 -2.323 -3.310 1.839 -3.036 D 148 146 3 149 3 0 0 101 179 -12.633 -2.667 -0.247 IL 149 149 3 149 3 1 5 113 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 150 149 3 152 3 1 3 104 182 -5.958 -0.047 -5.958 1.567 -2.157 -0.904 -1.844 D 151 149 3 152 3 0 0 100 178 -12.633 -2.667 -0.247 IL 152 152 3 152 3 1 4 112 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - G - - - ML 153 152 3 155 3 1 2 103 181 -5.958 -0.047 -5.958 0.217 -1.923 1.161 -1.568 D 154 152 3 155 3 0 0 100 177 -12.633 -2.667 -0.247 IL 155 155 3 155 3 1 4 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - G - - - ML 156 155 3 158 3 1 2 101 179 -5.958 -0.047 -5.958 -1.360 -2.794 1.717 -2.486 D 157 155 3 158 3 0 0 99 177 -12.633 -0.546 -1.667 IL 158 158 3 158 3 1 3 109 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - A - - - ML 159 158 3 161 3 1 2 100 178 -6.034 -0.045 -6.034 1.060 -0.737 -0.420 -0.817 D 160 158 3 161 3 0 0 97 174 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 3 108 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - A - - - ML 162 161 3 164 3 1 1 99 176 -6.034 -0.045 -6.034 1.325 -0.398 -1.670 -1.247 D 163 161 3 164 3 0 0 95 172 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 2 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - G - - - ML 165 164 3 167 3 1 1 97 174 -6.034 -0.045 -6.034 -0.286 -2.323 1.447 -1.978 D 166 164 3 167 3 0 0 94 171 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 2 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 59 - G - - - ML 168 167 3 170 3 1 1 96 173 -6.034 -0.045 -6.034 -1.264 -2.846 1.710 -2.532 D 169 167 3 170 3 0 0 93 169 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 2 104 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - c - - - ML 171 170 3 173 3 1 1 95 171 -6.034 -0.045 -6.034 -0.528 0.569 -0.649 0.245 D 172 170 3 173 3 0 0 91 168 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 61 - A - - - ML 174 173 3 176 3 1 1 93 170 -6.034 -0.045 -6.034 1.877 -3.385 -3.063 -3.180 D 175 173 3 176 3 0 0 90 166 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 62 - G - - - ML 177 176 3 179 3 1 1 92 168 -6.034 -0.045 -6.034 -1.067 -2.744 1.672 -2.422 D 178 176 3 179 3 0 0 89 165 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 63 - G - - - ML 180 179 3 182 3 1 1 90 166 -6.034 -0.351 -2.318 -0.824 -2.617 1.617 -2.286 D 181 179 3 182 3 0 0 88 164 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 64 - G - - - ML 183 182 3 185 3 1 1 89 165 -5.738 -0.055 -5.738 -0.349 -1.930 1.389 -1.585 D 184 182 3 185 3 0 0 87 163 -13.885 -0.205 -2.920 IL 185 185 3 185 3 1 1 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 65 - A - - - ML 186 185 3 188 3 1 1 88 163 -6.034 -0.045 -6.034 1.432 -2.023 -0.422 -1.690 D 187 185 3 188 3 0 0 84 160 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 66 - U - - - ML 189 188 3 191 3 1 1 86 162 -6.034 -0.045 -6.034 -1.900 -0.569 -2.109 1.499 D 190 188 3 191 3 0 0 83 158 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 94 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 67 - U - - - ML 192 191 3 194 3 1 1 85 160 -6.034 -0.045 -6.034 -1.985 -0.792 -2.199 1.562 D 193 191 3 194 3 0 0 81 156 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 93 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 68 - C - - - ML 195 194 3 197 3 1 1 83 158 -6.034 -0.045 -6.034 -1.215 1.230 -1.777 -0.101 D 196 194 3 197 3 0 0 80 155 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 69 - C - - - ML 198 197 3 200 3 1 1 82 157 -6.034 -0.045 -6.034 -2.014 1.377 -2.236 -0.084 D 199 197 3 200 3 0 0 78 153 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 70 - u - - - ML 201 200 3 203 3 1 1 80 155 -6.034 -0.045 -6.034 0.087 -0.486 -1.091 0.811 D 202 200 3 203 3 0 0 77 151 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 71 - C - - - ML 204 203 3 206 3 1 1 79 153 -6.034 -0.045 -6.034 -2.350 1.618 -2.602 -0.813 D 205 203 3 206 3 0 0 75 149 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 87 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 72 - U - - - ML 207 206 3 209 3 1 1 77 151 -6.034 -0.045 -6.034 -1.695 0.162 -1.893 1.204 D 208 206 3 209 3 0 0 73 147 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 73 - U - - - ML 210 209 3 212 3 1 1 76 150 -6.034 -0.085 -4.570 -1.779 -1.633 -1.117 1.548 D 211 209 3 212 3 0 0 72 145 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 84 159 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 74 - C - - - ML 213 212 3 215 3 1 1 74 148 -5.994 -0.091 -4.461 -1.553 1.340 -1.032 -0.647 D 214 212 3 215 3 0 0 69 143 -12.217 -2.251 -0.341 IL 215 215 3 215 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 75 - U - - - ML 216 215 3 218 3 1 1 73 146 -3.299 -0.229 -4.460 -2.439 -1.977 -2.626 1.765 D 217 215 3 218 3 0 0 68 141 -12.700 -2.734 -0.235 IL 218 218 3 218 3 1 1 73 146 -4.793 -0.053 -12.437 0.000 0.000 0.000 0.000 [ MATL 73 ] 77 - G - - - ML 219 218 3 221 3 1 1 72 145 -5.908 -0.049 -5.908 -0.817 -1.575 1.469 -1.605 D 220 218 3 221 3 0 0 66 139 -13.047 -3.081 -0.182 IL 221 221 3 221 3 1 1 80 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 78 - C - - - ML 222 221 3 224 3 1 1 70 143 -5.908 -0.169 -3.414 -2.612 1.777 -2.846 -1.889 D 223 221 3 224 3 0 0 65 138 -13.047 -3.081 -0.182 IL 224 224 3 224 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 79 - C - - - ML 225 224 3 227 3 1 1 68 141 -5.792 -0.053 -5.792 -1.640 1.289 -1.846 -0.063 D 226 224 3 227 3 0 0 64 137 -13.677 -1.217 -0.811 IL 227 227 3 227 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 80 - A - - - ML 228 227 3 230 3 1 1 67 139 -5.908 -0.049 -5.908 1.452 -0.865 -1.683 -1.308 D 229 227 3 230 3 0 0 60 132 -13.047 -3.081 -0.182 IL 230 230 3 230 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 81 - C - - - ML 231 230 3 233 3 1 1 65 137 -5.908 -0.049 -5.908 -0.688 1.165 -0.742 -0.889 D 232 230 3 233 3 0 0 58 130 -13.047 -3.081 -0.182 IL 233 233 3 233 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 82 - C - - - ML 234 233 3 236 3 1 1 63 135 -5.908 -0.049 -5.908 -0.592 1.016 -0.448 -0.784 D 235 233 3 236 3 0 0 57 128 -13.047 -3.081 -0.182 IL 236 236 3 236 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 79 ] 83 - u - - - ML 237 236 3 239 3 1 1 61 133 -5.908 -0.049 -5.908 -0.508 -0.594 -0.371 0.896 D 238 236 3 239 3 0 0 55 126 -13.047 -3.081 -0.182 IL 239 239 3 239 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 80 ] 84 - g - - - ML 240 239 3 242 3 1 1 59 130 -5.908 -0.049 -5.908 -0.317 -0.323 0.878 -0.834 D 241 239 3 242 3 0 0 54 125 -13.047 -1.548 -0.604 IL 242 242 3 242 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 81 ] 85 - u - - - ML 243 242 3 245 3 1 1 57 127 -5.953 -0.081 -4.698 -0.130 -0.605 -0.546 0.802 D 244 242 3 245 3 0 0 52 122 -12.682 -1.225 -0.806 IL 245 245 3 245 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 82 ] 86 - U - - - ML 246 245 3 248 3 1 1 54 125 -5.963 -0.130 -3.836 -2.044 -1.169 -2.257 1.634 D 247 245 3 248 3 0 0 48 118 -12.585 -1.365 -0.709 IL 248 248 3 248 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 83 ] 87 - G - - - ML 249 248 3 251 3 1 1 52 121 -5.916 -0.049 -5.916 -0.565 -1.058 1.079 -0.451 D 250 248 3 251 3 0 0 40 109 -12.988 -3.023 -0.190 IL 251 251 3 251 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 84 ] 88 - G - - - ML 252 251 3 254 3 1 1 48 117 -5.916 -0.049 -5.916 -0.110 -2.047 1.335 -1.697 D 253 251 3 254 3 0 0 28 97 -12.988 -3.023 -0.190 IL 254 254 3 254 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 85 ] 89 - C - - - ML 255 254 3 257 2 1 1 1 1 * 0.000 -0.475 1.045 -0.923 -0.537 D 256 254 3 257 2 0 0 0 0 * 0.000 IL 257 257 3 257 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 86 ] - - - - - - E 258 257 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Xist_exon1 ACC RF01880 DESC X-chromosome inactivation gene exon 1 LENG 85 MAXL 166 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 16 18:32:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01880/CM NSEQ 24 EFFN 4.350586 CKSUM 3454454360 STATS LOCAL MSV -8.8807 0.71849 STATS LOCAL VITERBI -9.4974 0.71849 STATS LOCAL FORWARD -3.6195 0.71849 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35546 1.39157 1.39340 1.40545 1.38629 1.38629 1.38629 1.38629 0.13558 5.33927 2.10384 0.39730 1.11515 0.00000 * 1 0.48116 2.00803 2.32573 1.89732 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03447 4.07790 4.07790 1.46634 0.26236 0.83030 0.57256 2 0.09779 3.59496 3.38459 3.44800 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03271 4.12964 4.12964 1.46634 0.26236 0.37827 1.15533 3 0.24939 3.04733 2.16551 2.83790 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 4 2.71321 1.80718 2.85862 0.33938 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 5 1.64129 0.65160 1.90483 1.99354 - C - - : 1.38629 1.38629 1.38629 1.38629 0.08163 2.76276 4.18214 0.06072 2.83161 1.09861 0.40547 6 0.46521 2.43083 2.49915 1.60009 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 7 0.54826 1.87439 2.31263 1.77436 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 8 0.08494 3.73282 3.50912 3.59065 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 9 0.60767 2.21240 1.92966 1.60571 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 10 3.19814 2.85780 3.33094 0.14386 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 11 2.53591 0.45159 2.34080 1.67161 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 12 3.11379 0.19462 2.76175 2.67014 - C - - : 1.38629 1.38629 1.38629 1.38629 0.08548 4.18214 2.70816 1.46634 0.26236 1.09861 0.40547 13 1.04072 2.62082 0.73214 2.37327 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03272 4.12938 4.12938 1.46634 0.26236 0.37708 1.15792 14 0.08494 3.73282 3.50912 3.59065 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 15 2.04759 0.44706 2.65828 1.82400 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 16 3.04446 0.24897 3.22199 2.01814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 17 3.37037 0.12950 3.53990 2.84604 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 18 3.04446 0.24897 3.22199 2.01814 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 19 0.47023 2.42578 2.49347 1.58910 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 20 3.07494 3.78714 0.10118 3.59804 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 21 2.62444 0.37373 2.14621 2.10021 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 22 0.33988 2.02402 2.70217 2.41958 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 23 1.79272 2.16821 1.81229 0.58729 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 24 3.19814 2.85780 3.33094 0.14386 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 25 0.26422 3.01200 2.10240 2.79947 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 26 2.12614 3.28817 0.22722 3.06534 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 27 2.45075 0.47661 2.08327 1.78163 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 28 2.33471 0.36226 2.84379 1.90477 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 29 0.08494 3.73282 3.50912 3.59065 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 30 1.51462 1.09946 2.16017 1.10337 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 31 1.76314 2.08864 0.58979 1.89582 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 32 1.97589 2.74684 0.38136 2.16891 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 33 3.07494 3.78714 0.10118 3.59804 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 34 1.98425 2.77976 0.36708 2.22830 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 35 3.19814 2.85780 3.33094 0.14386 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 36 0.63294 2.21596 1.67667 1.75487 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 37 1.67724 2.21138 0.50142 2.32392 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 38 1.34426 2.39019 0.69798 1.89669 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 39 2.56628 1.30106 2.70335 0.53793 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04857 3.43767 4.18214 0.75148 0.63803 1.09861 0.40547 40 1.91286 2.46140 0.55022 1.65965 - G - - : 1.38629 1.38629 1.38629 1.38629 0.08548 4.18214 2.70816 1.46634 0.26236 1.09861 0.40547 41 1.43468 1.72641 1.77560 0.88067 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03272 4.12938 4.12938 1.46634 0.26236 1.85107 0.17087 42 2.36350 2.34408 1.79131 0.44125 - U - - : 1.38629 1.38629 1.38629 1.38629 0.09630 4.12938 2.58080 1.46634 0.26236 1.85106 0.17087 43 2.79288 0.31751 2.95420 1.84087 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03483 4.06791 4.06791 1.46634 0.26236 2.30970 0.10457 44 2.62102 0.35611 2.06410 2.30315 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03483 4.06791 4.06791 1.46634 0.26236 2.30970 0.10457 45 1.92259 2.32145 2.52367 0.39234 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03483 4.06791 4.06791 1.46634 0.26236 2.30970 0.10457 46 2.05957 0.81606 1.45506 1.62489 - c - - : 1.38629 1.38629 1.38629 1.38629 0.15689 4.06791 2.05504 1.46634 0.26236 0.83571 0.56839 47 2.53560 1.95819 2.67117 0.34178 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03683 4.01307 4.01307 1.46634 0.26236 0.52027 0.90229 48 1.58705 1.92270 1.46453 0.87210 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03271 4.12964 4.12964 1.46634 0.26236 1.84848 0.17135 49 2.99666 3.68039 0.11166 3.49045 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03271 4.12964 4.12964 1.46634 0.26236 1.84848 0.17135 50 0.30012 2.88121 2.01310 2.66457 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03271 4.12964 4.12964 1.46634 0.26236 1.84848 0.17135 51 1.23594 2.71896 0.58132 2.47298 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03271 4.12964 4.12964 1.46634 0.26236 1.84848 0.17135 52 2.32869 3.32305 0.19612 3.10958 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03271 4.12964 4.12964 1.46634 0.26236 0.37827 1.15533 53 0.65155 1.89714 1.67755 1.95241 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 54 0.46787 1.66190 2.54373 2.25082 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 55 1.58444 2.99677 0.38343 2.75718 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 56 2.26238 3.35888 0.20100 3.14160 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 57 1.75238 0.99181 1.83644 1.21621 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 58 0.08494 3.73282 3.50912 3.59065 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 59 2.12614 3.28817 0.22722 3.06534 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 60 1.95749 3.20013 0.26555 2.97107 - G - - : 1.38629 1.38629 1.38629 1.38629 0.24302 4.18214 1.60705 1.46634 0.26236 1.09861 0.40547 61 1.62803 2.72396 0.42351 2.48501 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97731 3.97731 1.46634 0.26236 0.14175 2.02370 62 0.39395 2.78852 1.67863 2.55786 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 63 2.70338 1.78039 2.84825 0.34743 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 64 2.76243 1.93533 2.91036 0.30377 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 65 2.22865 0.53402 2.61772 1.45622 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 66 2.78197 0.43209 2.93649 1.44442 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 67 1.32574 1.72340 2.14269 0.82417 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 68 3.01495 0.26469 3.18997 1.94956 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 69 2.56151 1.27402 2.69832 0.55202 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03101 4.18214 4.18214 1.46634 0.26236 1.09861 0.40547 70 2.61953 2.51791 2.16035 0.31300 - U - - : 1.38629 1.38629 1.38629 1.38629 0.05909 4.18214 3.16744 1.46634 0.26236 1.09861 0.40547 71 2.46264 0.45744 2.10187 1.83470 - C - - : 1.38629 1.38629 1.38629 1.38629 0.06304 4.15493 3.09203 1.46634 0.26236 1.55994 0.23591 72 3.07669 2.75699 3.20649 0.16263 - U - - : 1.38629 1.38629 1.38629 1.38629 0.15902 2.28682 3.09156 0.03675 3.32207 1.89511 0.16287 73 1.95238 2.47809 0.36821 2.49872 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03388 4.09505 4.09505 1.46634 0.26236 2.13574 0.12574 74 3.19686 0.15451 3.35929 2.69546 - C - - : 1.38629 1.38629 1.38629 1.38629 0.11707 4.09505 2.36636 1.46634 0.26236 2.13574 0.12574 75 2.52322 0.49284 2.66556 1.42982 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03676 4.01475 4.01475 1.46634 0.26236 0.84366 0.56235 76 0.38000 1.98554 2.55259 2.29314 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03388 4.09505 4.09505 1.46634 0.26236 2.13574 0.12574 77 1.86335 0.57905 1.90088 2.00260 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03388 4.09505 4.09505 1.46634 0.26236 2.13574 0.12574 78 1.79669 0.68182 1.69679 1.92974 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03388 4.09505 4.09505 1.46634 0.26236 2.13574 0.12574 79 1.73819 1.79828 1.64367 0.76505 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03388 4.09505 4.09505 1.46634 0.26236 2.13574 0.12574 80 1.60626 1.61033 0.77804 1.96445 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03388 4.09505 4.09505 1.46634 0.26236 1.07284 0.41861 81 1.47637 1.80588 1.76483 0.83014 - u - - : 1.38629 1.38629 1.38629 1.38629 0.05621 4.12612 3.25662 1.46634 0.26236 0.84910 0.55826 82 2.80323 2.19652 2.95061 0.25375 - U - - : 1.38629 1.38629 1.38629 1.38629 0.08999 4.13295 2.65897 1.46634 0.26236 0.94601 0.49149 83 1.77805 2.11952 0.63853 1.69894 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10067 4.10067 1.46634 0.26236 2.09496 0.13133 84 1.46268 2.80517 0.46080 2.56251 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03368 4.10067 4.10067 1.46634 0.26236 2.09496 0.13133 85 1.71543 0.66174 2.02638 1.75823 - C - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //