# STOCKHOLM 1.0
#=GF ID TB10Cs4H2
#=GF AC RF01862
#=GF DE Trypanosomatid snoRNA TB10Cs4H2
#=GF AU Osuch I
#=GF GA 50.0
#=GF NC 48.7
#=GF TC 54.5
#=GF SE Predicted; WAR;
#=GF SS Predicted; WAR;
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.49 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 15840815
#=GF RT A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in
#=GF RT Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA
#=GF RT modification.
#=GF RA Liang XH, Uliel S, Hury A, Barth S, Doniger T, Unger R, Michaeli S
#=GF RL RNA. 2005;11:619-645.
#=GF WK Trypanosome_H/ACA_box_snoRNAs
#=GF SQ 4

AAHK01000100.1/7901-7970       ACGCCUUUGUCUAACACCCCGCACCGCGAGCACUAUUUCCCGGCGGGGUGAUUUCAGAGGGCGGAGAUUC
AAHA01000001.1/3203800-3203735 CCGUCUCUGUCUAACGCCUCACA-UGU---GCAGAAAUCGUUGUGGGGCGAUUUCAGGAGGCGGAGAUAU
FR798992.1/176034-175968       ACGUCUCUGUCUAACGGGGUGCGGUGC---UGCUCUGUCGGCGCACCUCGAUUUCAGGAGACGGAGAUGA
FR796414.1/181883-181817       ACGUCUCUGUCUAACGGGGUGCGACGC---UGCUCUGUCGGCGCACCUCGAUUUCAGGAGAUGGAGAUGA
#=GC SS_cons                   :<<<<<<<------<<<<<<<<<____...___________>>>>>>>>>------>>>>>>>:::::::
#=GC RF                        ACGcCuCUGUCUAACGccgcGCgauGC...ugcUaUgUCGucGCgcggCGAUUUCAGGaGgCGGAGAUga
//
