INFERNAL1/a [1.1.5 | Sep 2023] NAME TB9Cs1H1 ACC RF01861 DESC Trypanosomatid snoRNA TB9Cs1H1 STATES 193 NODES 54 CLEN 63 W 90 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 22:30:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01861/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.746094 CKSUM 3921733990 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 58.70 NC 53.70 EFP7GF -8.4429 0.72054 ECMLC 0.62640 -7.00693 2.56908 1600000 483364 0.002483 ECMGC 0.43273 -18.34285 -4.87422 1600000 135904 0.002943 ECMLI 0.60702 -5.74509 3.68994 1600000 368542 0.003256 ECMGI 0.44625 -13.98593 -1.91092 1600000 87552 0.004569 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 90 124 -7.249 -7.456 -0.043 -5.870 IL 1 1 2 1 4 1 19 93 127 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 92 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 19 90 124 -8.619 -0.016 -6.937 1.213 -0.460 -1.388 -0.803 D 4 2 3 5 3 0 13 89 123 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 18 91 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 66 - A - - MR 6 5 3 8 3 1 18 89 123 -8.619 -0.016 -6.937 1.817 -2.942 -2.518 -2.543 D 7 5 3 8 3 0 12 87 121 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 17 90 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 65 - G - - MR 9 8 3 11 3 1 18 88 122 -8.619 -0.016 -6.937 -2.169 -3.470 1.828 -2.856 D 10 8 3 11 3 0 11 86 120 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 16 89 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 64 - A - - MR 12 11 3 14 3 1 17 87 121 -8.619 -0.016 -6.937 1.817 -2.942 -2.518 -2.543 D 13 11 3 14 3 0 10 86 119 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 15 88 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 63 - a - - MR 15 14 3 17 5 1 17 86 120 -7.342 -0.033 -7.157 -7.369 -8.261 0.717 -1.671 0.654 -1.094 D 16 14 3 17 5 0 9 85 119 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 13 87 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 62 G C - - MP 18 17 3 22 6 2 18 85 119 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -5.292 -3.361 -5.464 -0.180 -6.003 -4.901 -1.230 -5.731 -4.668 3.746 -4.970 -1.087 -1.602 -4.823 -3.300 -4.333 ML 19 17 3 22 6 1 11 84 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 11 83 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 6 80 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 13 85 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 13 85 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 61 C G - - MP 24 23 6 28 6 2 17 83 117 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -5.173 -5.132 -4.754 -1.319 -3.349 -5.083 3.705 -4.222 -4.831 -1.152 -5.017 -3.094 0.093 -5.199 -1.078 -3.652 ML 25 23 6 28 6 1 11 82 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 10 81 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 6 78 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 12 83 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 12 83 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 60 g c - - MP 30 29 6 34 6 2 16 81 115 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -3.773 -2.640 -3.784 2.279 -4.413 -4.640 0.085 -4.109 -3.792 2.866 -4.237 -0.226 -0.204 -3.907 -1.878 -2.669 ML 31 29 6 34 6 1 10 80 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 10 79 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 5 77 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 12 81 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 12 81 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 59 C G - - MP 36 35 6 40 6 2 14 79 113 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -5.173 -5.132 -4.754 -1.319 -3.349 -5.083 3.705 -4.222 -4.831 -1.152 -5.017 -3.094 0.093 -5.199 -1.078 -3.652 ML 37 35 6 40 6 1 10 78 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 9 78 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 5 75 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 11 79 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 11 79 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 58 A U - - MP 42 41 6 46 6 2 13 77 111 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -4.324 -3.230 -4.290 3.590 -4.913 -6.039 -0.576 -4.295 -4.175 0.502 -4.748 -0.630 -0.990 -5.127 -2.514 -3.103 ML 43 41 6 46 6 1 9 76 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 7 76 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 5 74 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 10 77 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 10 77 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 57 G C - - MP 48 47 6 52 4 2 11 75 109 -7.249 -7.456 -0.043 -5.870 -5.292 -3.361 -5.464 -0.180 -6.003 -4.901 -1.230 -5.731 -4.668 3.746 -4.970 -1.087 -1.602 -4.823 -3.300 -4.333 ML 49 47 6 52 4 1 8 75 108 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 6 74 108 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 4 73 107 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 10 76 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 9 75 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 8 - a - - - ML 54 53 6 56 3 1 10 73 107 -8.246 -0.017 -6.900 0.635 -0.216 -1.113 0.169 D 55 53 6 56 3 0 4 71 105 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 8 74 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - a - - - ML 57 56 3 59 3 1 9 72 106 -8.246 -0.017 -6.900 0.734 0.291 -1.303 -0.499 D 58 56 3 59 3 0 3 70 104 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 73 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - u - - - ML 60 59 3 62 3 1 8 71 105 -8.246 -0.017 -6.900 0.174 -0.902 -0.190 0.546 D 61 59 3 62 3 0 2 69 103 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 7 72 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - A - - - ML 63 62 3 65 3 1 8 70 104 -8.246 -0.017 -6.900 1.817 -2.942 -2.518 -2.543 D 64 62 3 65 3 0 2 68 102 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 6 71 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - u - - - ML 66 65 3 68 3 1 7 69 103 -8.246 -0.017 -6.900 -0.521 -1.090 0.363 0.629 D 67 65 3 68 3 0 1 67 101 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 6 70 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - G - - - ML 69 68 3 71 3 1 6 68 102 -8.246 -0.017 -6.900 -2.169 -3.470 1.828 -2.856 D 70 68 3 71 3 0 0 66 100 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 5 69 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - A - - - ML 72 71 3 74 3 1 5 67 101 -8.246 -0.017 -6.900 1.817 -2.942 -2.518 -2.543 D 73 71 3 74 3 0 0 66 99 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 4 68 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 75 74 3 77 3 1 5 66 100 -8.619 -0.016 -6.937 1.817 -2.942 -2.518 -2.543 D 76 74 3 77 3 0 0 65 99 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 3 67 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 56 - A - - MR 78 77 3 80 3 1 4 65 99 -8.619 -0.016 -6.937 1.272 -1.744 -0.223 -1.219 D 79 77 3 80 3 0 0 63 97 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 66 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 55 - a - - MR 81 80 3 83 3 1 3 64 98 -8.619 -0.016 -6.937 0.635 0.409 -1.320 -0.476 D 82 80 3 83 3 0 0 62 96 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 65 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 54 - A - - MR 84 83 3 86 3 1 3 63 97 -8.619 -0.016 -6.937 1.817 -2.942 -2.518 -2.543 D 85 83 3 86 3 0 0 61 95 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 64 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 53 - G - - MR 87 86 3 89 3 1 3 62 96 -8.619 -0.016 -6.937 -2.169 -3.470 1.828 -2.856 D 88 86 3 89 3 0 0 60 94 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 63 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 52 - C - - MR 90 89 3 92 3 1 2 61 95 -8.619 -0.016 -6.937 -2.432 1.768 -3.262 -1.710 D 91 89 3 92 3 0 0 59 93 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 62 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 51 - C - - MR 93 92 3 95 3 1 2 60 94 -8.619 -0.016 -6.937 -2.432 1.768 -3.262 -1.710 D 94 92 3 95 3 0 0 59 92 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 61 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 50 - G - - MR 96 95 3 98 5 1 1 59 93 -7.342 -0.033 -7.157 -7.369 -8.261 -2.169 -3.470 1.828 -2.856 D 97 95 3 98 5 0 0 58 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 60 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 16 49 a u - - MP 99 98 3 103 6 2 2 58 92 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -3.715 -2.601 -3.850 2.582 -4.726 -5.384 -0.420 -3.999 -3.629 1.215 -4.192 2.411 -0.637 -4.422 -2.309 -2.619 ML 100 98 3 103 6 1 1 57 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 56 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 53 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 58 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 58 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 17 48 C G - - MP 105 104 6 109 6 2 2 56 90 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -5.173 -5.132 -4.754 -1.319 -3.349 -5.083 3.705 -4.222 -4.831 -1.152 -5.017 -3.094 0.093 -5.199 -1.078 -3.652 ML 106 104 6 109 6 1 1 55 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 54 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 52 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 56 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 56 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 18 47 C G - - MP 111 110 6 115 6 2 2 54 88 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -4.128 -4.076 -3.928 -0.251 -2.722 -4.434 3.107 -3.478 -3.936 -0.044 -4.288 -2.019 1.916 -4.229 -0.379 -2.774 ML 112 110 6 115 6 1 1 53 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 53 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 50 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 54 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 54 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 19 46 a u - - MP 117 116 6 121 6 2 2 52 86 -9.230 -9.169 -0.019 -7.946 -8.225 -8.620 -3.689 -2.638 -3.741 2.784 -4.324 -4.853 0.075 -3.976 -3.682 2.383 -4.187 -0.175 -0.215 -4.035 -1.868 -2.592 ML 118 116 6 121 6 1 1 51 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 51 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 49 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 52 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 52 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 20 45 G C - - MP 123 122 6 127 4 2 2 50 84 -7.249 -7.456 -0.043 -5.870 -4.306 -2.874 -4.328 0.590 -5.162 -4.727 -0.486 -4.722 -4.172 3.374 -4.546 1.032 -0.759 -4.212 -2.483 -3.213 ML 124 122 6 127 4 1 1 50 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 49 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 48 82 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 51 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 50 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 21 - U - - - ML 129 128 6 131 3 1 1 48 82 -8.246 -0.017 -6.900 -1.051 -0.096 -1.819 1.201 D 130 128 6 131 3 0 0 46 80 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 49 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 22 - u - - - ML 132 131 3 134 3 1 1 47 81 -8.246 -0.017 -6.900 -0.521 -1.090 0.363 0.629 D 133 131 3 134 3 0 0 45 79 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 48 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 23 - a - - - ML 135 134 3 137 3 1 1 46 80 -8.246 -0.017 -6.900 0.214 0.196 -0.177 -0.305 D 136 134 3 137 3 0 0 44 78 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 47 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 24 - u - - - ML 138 137 3 140 3 1 1 45 79 -8.246 -0.017 -6.900 0.549 -0.985 -1.209 0.677 D 139 137 3 140 3 0 0 43 77 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 46 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 25 - u - - - ML 141 140 3 143 3 1 1 44 78 -8.246 -0.017 -6.900 -0.527 -1.125 0.499 0.521 D 142 140 3 143 3 0 0 42 76 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 45 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 26 - G - - - ML 144 143 3 146 3 1 1 43 77 -8.246 -0.017 -6.900 -2.169 -3.470 1.828 -2.856 D 145 143 3 146 3 0 0 41 75 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 44 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 27 - C - - - ML 147 146 3 149 3 1 1 42 76 -8.246 -0.017 -6.900 -2.432 1.768 -3.262 -1.710 D 148 146 3 149 3 0 0 40 74 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 43 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 28 - g - - - ML 150 149 3 152 3 1 1 41 75 -8.246 -0.017 -6.900 0.142 -1.051 0.429 0.094 D 151 149 3 152 3 0 0 39 72 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 42 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - u - - - ML 153 152 3 155 3 1 1 40 74 -1.795 -0.507 -6.900 0.137 -0.902 -0.197 0.578 D 154 152 3 155 3 0 0 34 68 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 42 75 -0.788 -1.799 -2.906 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - A - - - ML 156 155 3 158 3 1 1 26 44 -8.026 -0.020 -6.680 1.745 -2.497 -2.116 -2.052 D 157 155 3 158 3 0 0 24 43 -7.545 -0.447 -1.937 IL 158 158 3 158 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - c - - - ML 159 158 3 161 3 1 1 24 43 -8.246 -0.017 -6.900 0.015 0.969 -1.588 -0.515 D 160 158 3 161 3 0 0 23 42 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - u - - - ML 162 161 3 164 3 1 1 23 42 -8.246 -0.017 -6.900 -0.950 0.619 -1.760 0.724 D 163 161 3 164 3 0 0 22 41 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 36 - u - - - ML 165 164 3 167 3 1 1 22 41 -8.246 -0.017 -6.900 0.197 -0.900 -0.224 0.547 D 166 164 3 167 3 0 0 21 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 37 - G - - - ML 168 167 3 170 3 1 1 21 40 -8.246 -0.017 -6.900 -0.687 -0.562 1.112 -0.887 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 38 - U - - - ML 171 170 3 173 3 1 1 20 38 -8.246 -0.017 -6.900 -2.020 -1.925 -2.775 1.742 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 39 - G - - - ML 174 173 3 176 3 1 1 19 37 -8.246 -0.017 -6.900 -2.169 -3.470 1.828 -2.856 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 40 - C - - - ML 177 176 3 179 3 1 1 17 36 -8.246 -0.017 -6.900 -2.432 1.768 -3.262 -1.710 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 41 - U - - - ML 180 179 3 182 3 1 1 16 35 -8.246 -0.017 -6.900 -2.020 -1.925 -2.775 1.742 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 42 - G - - - ML 183 182 3 185 3 1 1 15 33 -8.246 -0.017 -6.900 -2.169 -3.470 1.828 -2.856 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 43 - C - - - ML 186 185 3 188 3 1 1 13 31 -8.246 -0.017 -6.900 -2.432 1.768 -3.262 -1.710 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 44 - g - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -0.371 -0.296 0.359 0.176 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB9Cs1H1 ACC RF01861 DESC Trypanosomatid snoRNA TB9Cs1H1 LENG 63 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 22:30:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01861/CM NSEQ 4 EFFN 3.152344 CKSUM 3921733990 STATS LOCAL MSV -8.2185 0.72054 STATS LOCAL VITERBI -8.7481 0.72054 STATS LOCAL FORWARD -3.5872 0.72054 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37453 1.38331 1.20751 1.62275 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 0.51541 1.70611 2.42479 2.01982 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 2.81844 3.59494 0.12371 3.53359 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 3.57147 0.16538 3.38674 2.40244 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 1.09530 2.67570 0.65834 2.53841 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 3.56846 0.16560 3.38517 2.40188 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 0.22194 3.22287 2.15719 3.13383 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 2.81585 3.59144 0.12415 3.52882 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 0.93186 1.53183 2.19667 1.27702 8 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 0.85705 1.15948 2.35455 1.78975 9 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 1.26771 2.04682 1.51101 0.99780 10 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 0.10592 3.59452 3.28530 3.33538 11 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 1.79913 2.19571 1.10835 0.93350 12 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 3.05601 3.97767 0.09934 3.54864 13 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 0.10592 3.59452 3.28530 3.33538 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 0.10592 3.59452 3.28530 3.33538 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 0.89734 3.08064 0.71456 2.86457 16 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 3.57013 0.16548 3.38604 2.40219 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 2.80985 0.56314 2.57500 1.22345 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 0.74699 2.70611 0.96133 2.56358 19 a - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 2.27051 3.06485 0.22787 2.92153 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 2.20254 1.45091 2.73928 0.52678 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 1.79913 2.19571 1.10835 0.93350 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 1.24203 1.22832 1.49990 1.63339 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 0.99272 2.11711 2.27188 0.90157 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 1.80424 2.22200 1.01031 1.01362 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 3.05601 3.97767 0.09934 3.54864 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 3.27444 0.13235 3.84350 2.73780 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 1.29563 2.15567 1.06407 1.32651 28 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.29434 2.04730 1.51546 0.97516 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.41665 1.12510 4.12713 0.93999 0.49533 1.09861 0.40547 30 0.14986 3.27007 2.99114 2.97711 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 1.39108 0.67220 2.57457 1.80531 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 2.12345 0.92736 2.69400 0.87425 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.25026 2.04478 1.53585 0.99726 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 1.94357 1.78344 0.56978 2.09478 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 2.94832 2.85603 3.47719 0.15178 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 3.05601 3.97767 0.09934 3.54864 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 3.27444 0.13235 3.84350 2.73780 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 2.94832 2.85603 3.47719 0.15178 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 3.05601 3.97767 0.09934 3.54864 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 3.27444 0.13235 3.84350 2.73780 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 1.68206 1.58884 1.10908 1.27301 44 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 3.14895 0.39788 2.88104 1.47279 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 2.79313 1.08788 2.51328 0.65232 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 1.36857 2.74258 0.50318 2.57018 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.68708 3.55866 0.14154 3.34047 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 3.08319 1.96359 2.87683 0.27770 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 3.05601 3.97767 0.09934 3.54864 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 3.27444 0.13235 3.84350 2.73780 51 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.27444 0.13235 3.84350 2.73780 52 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 3.05601 3.97767 0.09934 3.54864 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 0.10592 3.59452 3.28530 3.33538 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 0.92953 1.07419 2.36757 1.77208 55 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 0.47828 2.68906 1.53561 2.33422 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 3.71133 0.14853 3.43447 2.50910 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 3.35509 2.49285 3.03120 0.18133 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 2.68345 3.55311 0.14226 3.33414 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 2.77813 0.74399 2.48649 0.96909 60 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 2.68732 3.55903 0.14149 3.34089 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 3.74202 0.14661 3.44893 2.51476 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 0.87296 2.63438 0.90620 2.23992 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 0.10592 3.59452 3.28530 3.33538 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 3.05601 3.97767 0.09934 3.54864 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 63 0.10592 3.59452 3.28530 3.33538 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //