INFERNAL1/a [1.1.5 | Sep 2023] NAME ovine_lenti_FSE ACC RF01840 DESC ribosomal frameshift element STATES 171 NODES 50 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 05:33:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01840/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 14 EFFN 2.703613 CKSUM 1919970193 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 74.00 NC 37.20 EFP7GF -10.9255 0.71925 ECMLC 0.55127 -10.70955 0.88878 1600000 717780 0.001672 ECMGC 0.41013 -19.50411 -5.14721 1600000 144301 0.002772 ECMLI 0.55334 -9.27798 1.91227 1600000 586622 0.002046 ECMGI 0.41153 -16.19318 -2.88978 1600000 95434 0.004191 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 69 89 -7.130 -8.375 -0.067 -4.829 IL 1 1 2 1 4 1 15 71 90 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 71 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 54 - C - - MR 3 2 3 5 3 1 17 69 89 -8.607 -0.016 -6.924 -2.399 1.762 -3.230 -1.684 D 4 2 3 5 3 0 12 68 87 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 16 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 53 - A - - MR 6 5 3 8 3 1 16 68 88 -8.607 -0.016 -6.924 1.813 -2.915 -2.494 -2.513 D 7 5 3 8 3 0 11 67 86 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 15 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 52 - C - - MR 9 8 3 11 3 1 15 67 87 -8.607 -0.016 -6.924 -2.399 1.762 -3.230 -1.684 D 10 8 3 11 3 0 11 66 85 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 14 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 51 - C - - MR 12 11 3 14 3 1 14 66 86 -8.607 -0.016 -6.924 -2.399 1.762 -3.230 -1.684 D 13 11 3 14 3 0 11 65 84 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 14 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 50 - A - - MR 15 14 3 17 3 1 13 65 85 -8.607 -0.016 -6.924 1.813 -2.915 -2.494 -2.513 D 16 14 3 17 3 0 10 64 83 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 13 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 49 - C - - MR 18 17 3 20 3 1 12 64 84 -8.607 -0.016 -6.924 -2.399 1.762 -3.230 -1.684 D 19 17 3 20 3 0 9 63 82 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 12 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 48 - G - - MR 21 20 3 23 3 1 11 63 83 -8.607 -0.016 -6.924 -2.142 -3.440 1.824 -2.826 D 22 20 3 23 3 0 9 62 81 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 11 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 47 - a - - MR 24 23 3 26 3 1 10 62 82 -8.607 -0.016 -6.924 0.975 -0.785 -1.181 0.019 D 25 23 3 26 3 0 8 61 80 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 11 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 46 - A - - MR 27 26 3 29 3 1 9 61 81 -8.607 -0.016 -6.924 1.274 -0.600 -1.418 -0.868 D 28 26 3 29 3 0 8 60 79 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 10 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 45 - g - - MR 30 29 3 32 2 1 8 60 80 -8.673 -0.004 -0.091 -0.908 0.741 -0.222 D 31 29 3 32 2 0 8 60 79 -4.432 -0.068 IR 32 32 3 32 2 1 9 61 81 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 33 32 3 34 135 0 7 59 79 [ BEGL 12 ] - - - - - - S 34 33 1 35 4 0 0 48 67 -0.040 -6.985 -6.393 -7.033 [ MATP 13 ] 1 33 a u - - MP 35 34 1 39 6 2 2 48 67 -9.224 -9.163 -0.019 -7.939 -8.219 -8.614 -2.053 -2.102 -2.218 2.274 -2.181 -1.572 1.246 -0.199 -2.292 1.159 -2.836 -0.552 1.034 -2.356 -0.317 -1.436 ML 36 34 1 39 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 1 39 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 1 39 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 2 32 G C - - MP 41 40 6 45 6 2 2 46 65 -9.224 -9.163 -0.019 -7.939 -8.219 -8.614 -5.267 -3.348 -5.434 -0.161 -5.967 -4.892 -1.201 -5.700 -4.653 3.742 -4.956 -1.073 -1.573 -4.807 -3.269 -4.303 ML 42 40 6 45 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 3 31 G C - - MP 47 46 6 51 6 2 2 44 63 -9.224 -9.163 -0.019 -7.939 -8.219 -8.614 -5.267 -3.348 -5.434 -0.161 -5.967 -4.892 -1.201 -5.700 -4.653 3.742 -4.956 -1.073 -1.573 -4.807 -3.269 -4.303 ML 48 46 6 51 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 4 30 G C - - MP 53 52 6 57 6 2 2 42 61 -9.224 -9.163 -0.019 -7.939 -8.219 -8.614 -5.267 -3.348 -5.434 -0.161 -5.967 -4.892 -1.201 -5.700 -4.653 3.742 -4.956 -1.073 -1.573 -4.807 -3.269 -4.303 ML 54 52 6 57 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 5 29 G C - - MP 59 58 6 63 6 2 2 40 59 -9.224 -9.163 -0.019 -7.939 -8.219 -8.614 -5.267 -3.348 -5.434 -0.161 -5.967 -4.892 -1.201 -5.700 -4.653 3.742 -4.956 -1.073 -1.573 -4.807 -3.269 -4.303 ML 60 58 6 63 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 6 28 G C - - MP 65 64 6 69 6 2 2 38 57 -9.224 -9.163 -0.019 -7.939 -8.219 -8.614 -5.267 -3.348 -5.434 -0.161 -5.967 -4.892 -1.201 -5.700 -4.653 3.742 -4.956 -1.073 -1.573 -4.807 -3.269 -4.303 ML 66 64 6 69 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 7 27 c g - - MP 71 70 6 75 4 2 2 36 55 -7.235 -7.442 -0.043 -5.856 -2.157 -2.282 -2.319 1.571 -0.204 -3.154 2.069 -1.397 -2.363 0.927 -2.917 -0.710 1.339 -2.467 -0.097 -1.476 ML 72 70 6 75 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 8 - c - - - ML 77 76 6 79 3 1 1 33 52 -8.232 -0.017 -6.886 -0.960 0.749 -1.779 0.598 D 78 76 6 79 3 0 0 32 51 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 9 - A - - - ML 80 79 3 82 3 1 1 32 51 -8.232 -0.017 -6.886 1.813 -2.915 -2.494 -2.513 D 81 79 3 82 3 0 0 31 50 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 10 - C - - - ML 83 82 3 85 3 1 1 31 50 -8.232 -0.017 -6.886 -2.399 1.762 -3.230 -1.684 D 84 82 3 85 3 0 0 30 49 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 11 - G - - - ML 86 85 3 88 3 1 1 30 49 -8.232 -0.017 -6.886 -2.142 -3.440 1.824 -2.826 D 87 85 3 88 3 0 0 29 48 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 12 - U - - - ML 89 88 3 91 3 1 1 29 48 -8.232 -0.017 -6.886 -1.994 -1.903 -2.749 1.737 D 90 88 3 91 3 0 0 28 47 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 13 - G - - - ML 92 91 3 94 3 1 1 28 47 -8.232 -0.017 -6.886 -2.142 -3.440 1.824 -2.826 D 93 91 3 94 3 0 0 27 46 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 14 - U - - - ML 95 94 3 97 3 1 1 27 46 -8.232 -0.017 -6.886 -1.994 -1.903 -2.749 1.737 D 96 94 3 97 3 0 0 26 45 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 15 - G - - - ML 98 97 3 100 3 1 1 26 44 -8.232 -0.017 -6.886 -2.142 -3.440 1.824 -2.826 D 99 97 3 100 3 0 0 25 44 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 16 - G - - - ML 101 100 3 103 3 1 1 24 43 -8.232 -0.017 -6.886 -2.142 -3.440 1.824 -2.826 D 102 100 3 103 3 0 0 23 42 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 17 - U - - - ML 104 103 3 106 3 1 1 23 42 -8.232 -0.017 -6.886 -1.994 -1.903 -2.749 1.737 D 105 103 3 106 3 0 0 22 41 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 18 - G - - - ML 107 106 3 109 3 1 1 22 41 -8.232 -0.017 -6.886 -2.142 -3.440 1.824 -2.826 D 108 106 3 109 3 0 0 21 40 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - C - - - ML 110 109 3 112 3 1 1 21 40 -8.232 -0.017 -6.886 -2.399 1.762 -3.230 -1.684 D 111 109 3 112 3 0 0 20 39 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - C - - - ML 113 112 3 115 3 1 1 20 38 -8.232 -0.017 -6.886 -2.399 1.762 -3.230 -1.684 D 114 112 3 115 3 0 0 19 38 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - G - - - ML 116 115 3 118 3 1 1 19 37 -8.232 -0.017 -6.886 -2.142 -3.440 1.824 -2.826 D 117 115 3 118 3 0 0 18 37 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - U - - - ML 119 118 3 121 3 1 1 17 36 -8.232 -0.017 -6.886 -1.994 -1.903 -2.749 1.737 D 120 118 3 121 3 0 0 17 36 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - C - - - ML 122 121 3 124 3 1 1 16 35 -8.232 -0.017 -6.886 -2.399 1.762 -3.230 -1.684 D 123 121 3 124 3 0 0 16 34 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 24 - C - - - ML 125 124 3 127 3 1 1 15 33 -8.232 -0.017 -6.886 -2.399 1.762 -3.230 -1.684 D 126 124 3 127 3 0 0 15 33 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - G - - - ML 128 127 3 130 3 1 1 13 31 -8.232 -0.017 -6.886 -2.142 -3.440 1.824 -2.826 D 129 127 3 130 3 0 0 13 32 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - C - - - ML 131 130 3 133 2 1 1 1 1 * 0.000 -2.399 1.762 -3.230 -1.684 D 132 130 3 133 2 0 0 0 0 * 0.000 IL 133 133 3 133 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 134 133 3 -1 0 0 0 0 0 [ BEGR 40 ] - - - - - - S 135 33 1 136 3 0 0 25 43 -8.232 -0.017 -6.886 IL 136 136 2 136 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - A - - - ML 137 136 2 139 5 1 1 24 43 -7.330 -0.033 -7.145 -7.358 -8.249 1.813 -2.915 -2.494 -2.513 D 138 136 2 139 5 0 0 23 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 139 139 3 139 5 1 1 25 43 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 35 44 u a - - MP 140 139 3 144 6 2 2 23 42 -9.224 -9.163 -0.019 -7.939 -8.219 -8.614 -1.873 -2.014 -2.055 1.035 -1.950 -2.898 1.536 -2.337 -2.111 1.058 -2.673 -0.161 1.956 -1.295 0.367 -0.405 ML 141 139 3 144 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 3 144 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 3 144 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 36 43 G C - - MP 146 145 6 150 6 2 2 21 40 -9.224 -9.163 -0.019 -7.939 -8.219 -8.614 -4.385 -3.001 -4.429 0.342 -4.909 -4.543 -0.413 -4.825 -4.219 3.545 -1.399 -0.747 -0.728 -4.148 -2.382 -3.398 ML 147 145 6 150 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 37 42 g a - - MP 152 151 6 156 4 2 2 19 38 -7.235 -7.442 -0.043 -5.856 -2.507 -2.650 -2.617 0.492 0.436 -3.378 1.551 -2.736 1.796 0.490 -3.185 -1.124 1.496 -2.795 -0.212 -1.776 ML 153 151 6 156 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 156 156 5 156 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - a - - - ML 158 157 6 160 3 1 1 16 35 -8.232 -0.017 -6.886 0.851 -0.720 -1.139 0.182 D 159 157 6 160 3 0 0 16 34 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 39 - a - - - ML 161 160 3 163 3 1 1 15 33 -8.232 -0.017 -6.886 0.693 -1.263 0.320 -0.476 D 162 160 3 163 3 0 0 15 33 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 40 - U - - - ML 164 163 3 166 3 1 1 13 31 -8.232 -0.017 -6.886 -1.994 -1.903 -2.749 1.737 D 165 163 3 166 3 0 0 13 32 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 41 - A - - - ML 167 166 3 169 2 1 1 1 1 * 0.000 1.813 -2.915 -2.494 -2.513 D 168 166 3 169 2 0 0 0 0 * 0.000 IL 169 169 3 169 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 170 169 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ovine_lenti_FSE ACC RF01840 DESC ribosomal frameshift element LENG 54 MAXL 132 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 05:33:08 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01840/CM NSEQ 14 EFFN 3.298340 CKSUM 1919970193 STATS LOCAL MSV -7.8522 0.71925 STATS LOCAL VITERBI -8.1736 0.71925 STATS LOCAL FORWARD -3.7593 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62053 1.14435 1.19956 1.70127 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 0.00000 * 1 1.05400 1.39863 1.62237 1.57459 1 a - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 2 2.85933 3.65412 0.11727 3.59474 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 3 2.85694 3.65081 0.11767 3.59023 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 4 2.85533 3.64860 0.11793 3.58723 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 5 2.85419 3.64702 0.11811 3.58508 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 6 2.85333 3.64584 0.11825 3.58347 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 7 1.46156 1.02625 1.77810 1.42372 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 8 2.16926 0.81977 2.75115 0.96403 8 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 9 0.09977 3.65113 3.33698 3.39778 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 10 3.34151 0.12406 3.90742 2.79358 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 11 3.11085 4.03843 0.09354 3.60777 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 12 3.00308 2.90198 3.53345 0.14358 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 13 3.11085 4.03843 0.09354 3.60777 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 14 3.00308 2.90198 3.53345 0.14358 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 15 3.11085 4.03843 0.09354 3.60777 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 16 3.11085 4.03843 0.09354 3.60777 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 17 3.00308 2.90198 3.53345 0.14358 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 18 3.11085 4.03843 0.09354 3.60777 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 19 3.34151 0.12406 3.90742 2.79358 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 20 3.34151 0.12406 3.90742 2.79358 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 21 3.11085 4.03843 0.09354 3.60777 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 22 3.00308 2.90198 3.53345 0.14358 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 23 3.34151 0.12406 3.90742 2.79358 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 24 3.34151 0.12406 3.90742 2.79358 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 25 3.11085 4.03843 0.09354 3.60777 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 26 3.34151 0.12406 3.90742 2.79358 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 27 1.43233 1.94632 1.07373 1.28476 27 g - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 28 3.75859 0.14193 3.48881 2.54506 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 29 3.75936 0.14189 3.48918 2.54521 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 30 3.75923 0.14190 3.48912 2.54518 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 31 3.75715 0.14202 3.48812 2.54479 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 32 3.75115 0.14239 3.48522 2.54367 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 33 1.79671 1.68502 1.54061 0.83364 33 u - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 34 0.09977 3.65113 3.33698 3.39778 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 35 1.75260 1.54980 1.58703 0.89195 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 36 2.51287 3.14502 0.18839 3.04479 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 37 2.34624 1.25285 0.97830 1.41621 37 g - - < 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 38 0.76556 1.91818 2.24040 1.26714 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 39 0.88859 2.33767 1.13528 1.76680 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 40 3.00308 2.90198 3.53345 0.14358 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 41 0.09977 3.65113 3.33698 3.39778 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 42 0.57319 2.40711 1.46777 2.15622 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 43 3.26982 0.25051 2.58391 2.22467 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 44 1.21181 1.74515 1.26207 1.40790 44 a - - > 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 45 1.48627 2.05820 0.82109 1.57915 45 g - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 46 0.45921 1.81217 2.48490 2.10714 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 47 0.67587 1.96730 2.27783 1.39052 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 48 3.11085 4.03843 0.09354 3.60777 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 49 3.34151 0.12406 3.90742 2.79358 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 50 0.09977 3.65113 3.33698 3.39778 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 51 3.34151 0.12406 3.90742 2.79358 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 52 3.34151 0.12406 3.90742 2.79358 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 53 0.09977 3.65113 3.33698 3.39778 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03311 4.11756 4.11756 1.46634 0.26236 1.09861 0.40547 54 3.34151 0.12406 3.90742 2.79358 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.01669 4.10114 * 1.46634 0.26236 0.00000 * //