# STOCKHOLM 1.0
#=GF ID ovine_lenti_FSE
#=GF AC RF01840
#=GF DE ribosomal frameshift element
#=GF AU Boursnell C; 0000-0002-3494-4451
#=GF GA 45.0
#=GF NC 37.2
#=GF TC 74.0
#=GF SE Published; PMID:15629717
#=GF SS Published; PMID:15629717
#=GF TP Cis-reg; frameshift_element;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.32 -Z 2958934 CM SEQDB
#=GF DR SO; 0001427; cis_regulatory_frameshift_element;
#=GF DR URL; http://recode.ucc.ie/recode/r200523;
#=GF DR GO; 0075523; viral translational frameshifting;
#=GF RN [1]
#=GF RM 15629717
#=GF RT An extended signal involved in eukaryotic -1 frameshifting operates
#=GF RT through modification of the E site tRNA.
#=GF RA Bekaert M, Rousset JP
#=GF RL Mol Cell. 2005;17:61-68.
#=GF WK Visna_virus
#=GF SQ 14

AY454176.1/676-729   AGGGGGCCACGUGUGGUGCCGUCCGCGCCCCCUAUGUUGUAACAGAAGCACCAC
AY454226.1/682-735   AGGGGGCCACGUGUGGUGCCGUCCGCGCCCCCUAUGCUUUAACAGAAGCACCAC
AY454223.1/682-735   AGGGGGAUACGUGUGGUGCCGUCCGCUCCCCCUAUGGAAUAACUUCAGCACCAC
AY454232.1/679-732   AGGGGGCCACGUGUGGUGCCGUCCGCGCCCCCUAUGCUGUAAGCGAAGCACCAC
AY454171.1/676-729   AGGGGGAUACGUGUGGUGCCGUCCGCUCCCCCUAUGGAAUAACUGACGCACCAC
AY454168.1/667-720   CGGGGGAUACGUGUGGUGCCGUCCGCUCCCCCUAUGGCAUAACAAAUGCACCAC
AY454166.1/682-735   CGGGGGACACGUGUGGUGCCGUCCGCUCCCCCCAGGGAAUAACUGAUGCACCAC
AY454184.1/682-735   CGGGGGAUACGUGUGGUGCCGUCCGCUCCCCCUAUGGAAUAACAGAAGCACCAC
AF479638.1/1797-1850 AGGGGGCCACGUGUGGUGCCGUCCGCACCCCCUAUGUUGUAACAGAAGCACCAC
EU293537.2/1860-1913 AGGGGGCCACGUGUGGUGCCGUCCGCACCCCCUAUGCAGUAACGGAUGCACCAC
AF322109.1/1834-1887 AGGGGGCUACGUGUGGUGCCGUCCGCACCCCCUAUGGAGUAACGCAAGCACCAC
AY454217.1/678-731   CGGGGGCUACGUGUGGUGCCGUCCGCGCCCCCUAUGGAGUAACAGAAGCACCAC
AY454169.1/682-735   CGGGGGCCACGUGUGGUGCCGUCCGCGCCCCCUAUGGAAUAACAACAGCACCAC
AY454179.1/679-732   AGGGGGCCACGUGUGGUGCCGUCCGCUCCCCCUAUGGAAUAACAUCAGCACCAC
#=GC SS_cons         <<<<<<<_____AAAAAAA_______>>>>>>>:<<<____>>>:::aaaaaaa
#=GC RF              aGGGGGccACGUGUGGUGCCGUCCGCgCCCCCuAuGgaaUAaCagAaGCACCAC
//
