INFERNAL1/a [1.1.5 | Sep 2023] NAME eeev_FSE ACC RF01839 DESC eastern equine encephalitis ribosomal frameshift element STATES 223 NODES 65 CLEN 73 W 89 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 14:16:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01839/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 1.497070 CKSUM 2219213943 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 95.50 NC 40.90 EFP7GF -8.6959 0.71886 ECMLC 0.60484 -9.77177 0.63369 1600000 649372 0.001848 ECMGC 0.41441 -17.90323 -4.65145 1600000 97069 0.004121 ECMLI 0.55615 -7.66895 2.35634 1600000 316665 0.003789 ECMGI 0.42464 -13.00211 -0.96729 1600000 66300 0.006033 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 89 109 -6.759 -6.966 -0.061 -5.380 IL 1 1 2 1 4 1 25 93 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 92 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 25 89 109 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 4 2 3 5 3 0 19 87 107 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 24 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 24 88 107 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 7 5 3 8 3 0 19 86 106 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 23 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 23 87 106 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 10 8 3 11 3 0 18 85 105 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 22 86 105 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 13 11 3 14 3 0 17 84 104 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 22 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 1 22 85 104 -7.790 -0.023 -6.444 -0.592 0.084 -1.338 0.912 D 16 14 3 17 3 0 16 83 103 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 21 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 21 84 103 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 19 17 3 20 3 0 15 82 102 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 20 82 102 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 22 20 3 23 3 0 15 81 101 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - g - - - ML 24 23 3 26 3 1 19 81 101 -7.790 -0.023 -6.444 -0.325 -0.987 0.648 0.177 D 25 23 3 26 3 0 14 80 100 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 18 80 100 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 28 26 3 29 3 0 13 79 99 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 18 79 99 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 31 29 3 32 3 0 12 78 97 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 17 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 17 78 98 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 34 32 3 35 3 0 12 77 96 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 16 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 16 77 96 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 37 35 3 38 3 0 11 76 95 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 15 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 15 76 95 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 40 38 3 41 3 0 10 75 94 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 15 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 15 75 94 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 43 41 3 44 3 0 9 74 93 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 14 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 14 74 93 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 46 44 3 47 3 0 8 73 92 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 13 73 92 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 49 47 3 50 3 0 8 71 91 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 12 72 91 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 52 50 3 53 3 0 7 70 90 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 11 71 90 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 55 53 3 56 3 0 6 69 89 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 11 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 11 70 89 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 58 56 3 59 3 0 5 68 88 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 10 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 10 68 87 -7.790 -0.023 -6.444 1.632 -2.023 -1.690 -1.533 D 61 59 3 62 3 0 4 67 86 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 9 67 86 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 64 62 3 65 3 0 4 66 85 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 8 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 8 66 85 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 67 65 3 68 3 0 3 65 84 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 8 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 7 65 84 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 70 68 3 71 3 0 2 64 83 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 7 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 7 64 83 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 73 71 3 74 3 0 2 63 82 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 6 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 6 63 82 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 76 74 3 77 3 0 1 62 80 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 5 64 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 73 - c - - MR 78 77 3 80 3 1 5 62 81 -8.192 -0.021 -6.510 -0.491 0.887 -0.713 -0.270 D 79 77 3 80 3 0 0 60 79 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 4 63 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 72 - C - - MR 81 80 3 83 3 1 5 61 80 -8.192 -0.021 -6.510 -0.772 1.026 -1.564 0.057 D 82 80 3 83 3 0 0 59 78 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 3 62 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 71 - G - - MR 84 83 3 86 3 1 4 60 79 -8.192 -0.021 -6.510 -1.208 -2.365 1.621 -1.750 D 85 83 3 86 3 0 0 58 77 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 3 61 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 70 - U - - MR 87 86 3 89 3 1 3 59 78 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 88 86 3 89 3 0 0 57 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 2 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 69 - A - - MR 90 89 3 92 3 1 3 58 77 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 91 89 3 92 3 0 0 56 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 2 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 68 - G - - MR 93 92 3 95 3 1 3 57 76 -8.192 -0.021 -6.510 -1.208 -2.365 1.621 -1.750 D 94 92 3 95 3 0 0 55 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 67 - U - - MR 96 95 3 98 3 1 2 56 74 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 97 95 3 98 3 0 0 54 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 66 - G - - MR 99 98 3 101 3 1 2 55 73 -8.192 -0.021 -6.510 -0.514 -1.317 1.084 -0.362 D 100 98 3 101 3 0 0 53 72 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 65 - A - - MR 102 101 3 104 3 1 2 54 72 -8.192 -0.021 -6.510 1.140 -1.092 -1.093 -0.221 D 103 101 3 104 3 0 0 52 71 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 64 - C - - MR 105 104 3 107 3 1 1 53 71 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 106 104 3 107 3 0 0 51 70 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 63 - G - - MR 108 107 3 110 3 1 1 52 70 -8.192 -0.021 -6.510 -1.208 -2.365 1.621 -1.750 D 109 107 3 110 3 0 0 50 69 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 62 - A - - MR 111 110 3 113 3 1 1 51 69 -8.192 -0.021 -6.510 1.206 -1.366 -0.438 -0.821 D 112 110 3 113 3 0 0 49 68 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 61 - C - - MR 114 113 3 116 3 1 1 50 68 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 115 113 3 116 3 0 0 48 67 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 60 - A - - MR 117 116 3 119 3 1 1 49 67 -8.192 -0.021 -6.510 1.236 -1.388 -0.502 -0.848 D 118 116 3 119 3 0 0 47 66 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 59 - C - - MR 120 119 3 122 3 1 1 48 66 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 121 119 3 122 3 0 0 46 65 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 58 - A - - MR 123 122 3 125 3 1 1 47 65 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 124 122 3 125 3 0 0 45 64 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 57 - C - - MR 126 125 3 128 3 1 1 46 64 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 127 125 3 128 3 0 0 44 63 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 56 - A - - MR 129 128 3 131 3 1 1 45 63 -8.192 -0.021 -6.510 1.206 -1.366 -0.438 -0.821 D 130 128 3 131 3 0 0 43 62 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 55 - A - - MR 132 131 3 134 3 1 1 44 62 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 133 131 3 134 3 0 0 42 61 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 54 - G - - MR 135 134 3 137 3 1 1 43 61 -8.192 -0.021 -6.510 -0.114 -1.594 1.164 -0.990 D 136 134 3 137 3 0 0 41 60 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 53 - C - - MR 138 137 3 140 3 1 1 42 60 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 139 137 3 140 3 0 0 40 59 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 52 - A - - MR 141 140 3 143 3 1 1 41 59 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 142 140 3 143 3 0 0 39 58 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 51 - U - - MR 144 143 3 146 3 1 1 40 58 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 145 143 3 146 3 0 0 38 57 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 50 - g - - MR 147 146 3 149 3 1 1 39 57 -8.192 -0.021 -6.510 0.373 -1.337 0.773 -0.736 D 148 146 3 149 3 0 0 37 56 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 49 - C - - MR 150 149 3 152 5 1 1 38 56 -6.942 -0.043 -6.758 -6.970 -7.861 -1.327 1.490 -2.133 -0.827 D 151 149 3 152 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 26 48 C G - - MP 153 152 3 157 6 2 2 37 55 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.395 -3.353 -3.428 -0.040 -2.815 -1.021 3.303 -3.419 -3.480 0.273 -3.901 -1.603 0.653 -3.622 -0.688 -2.502 ML 154 152 3 157 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 27 47 U A - - MP 159 158 6 163 6 2 2 35 53 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.843 -3.654 -3.718 0.024 -2.738 -4.313 1.581 -3.408 -3.727 0.338 -4.117 -1.563 3.131 -4.006 -0.423 -2.583 ML 160 158 6 163 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 28 46 G C - - MP 165 164 6 169 6 2 2 33 51 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 166 164 6 169 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 29 45 C G - - MP 171 170 6 175 6 2 2 31 49 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 172 170 6 175 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 30 44 G C - - MP 177 176 6 181 6 2 2 29 47 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 178 176 6 181 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 31 43 G C - - MP 183 182 6 187 6 2 2 27 45 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 184 182 6 187 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 32 42 C G - - MP 189 188 6 193 6 2 2 25 43 -9.038 -8.978 -0.063 -7.754 -8.034 -5.052 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 190 188 6 193 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 33 41 G C - - MP 195 194 6 199 6 2 2 23 41 -8.998 -8.938 -0.023 -7.714 -7.994 -8.389 -4.199 -2.839 -4.263 0.548 -4.468 -4.469 0.038 -4.455 -3.950 3.475 -4.330 -0.525 -0.365 -4.106 -1.973 -3.149 ML 196 194 6 199 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 20 38 -9.574 -8.273 -4.070 -1.546 -4.769 -0.845 IL 199 199 5 199 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 34 40 C G - - MP 201 200 6 205 6 2 2 21 39 -8.998 -8.938 -0.023 -7.714 -7.994 -8.389 -4.005 -3.853 -3.781 -0.144 -2.633 -4.262 3.338 -3.386 -3.818 0.195 -4.132 -1.796 0.928 -4.106 -0.332 -2.678 ML 202 200 6 205 6 1 1 20 39 -6.678 -7.024 -0.846 -1.433 -6.874 -4.403 0.062 -0.820 0.645 -0.276 MR 203 200 6 205 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 6 205 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 35 39 C G - - MP 207 206 6 211 4 2 2 19 37 -6.759 -6.966 -0.061 -5.380 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 208 206 6 211 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 210 206 6 211 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 211 211 5 211 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 212 212 6 212 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 36 - U - - - ML 213 212 6 215 3 1 1 15 33 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 214 212 6 215 3 0 0 15 33 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 37 - U - - - ML 216 215 3 218 3 1 1 13 32 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 217 215 3 218 3 0 0 13 32 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 38 - G - - - ML 219 218 3 221 2 1 1 1 1 * 0.000 -1.208 -2.365 1.621 -1.750 D 220 218 3 221 2 0 0 0 0 * 0.000 IL 221 221 3 221 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 222 221 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME eeev_FSE ACC RF01839 DESC eastern equine encephalitis ribosomal frameshift element LENG 73 MAXL 162 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 14:16:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01839/CM NSEQ 6 EFFN 1.772461 CKSUM 2219213943 STATS LOCAL MSV -7.9479 0.71886 STATS LOCAL VITERBI -9.0842 0.71886 STATS LOCAL FORWARD -3.4691 0.71886 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.67215 1.30985 1.24191 1.37252 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 0.00000 * 1 2.39153 3.22278 0.21358 2.79720 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 2 2.49123 0.28970 3.05866 2.10576 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 3 2.33860 2.34983 2.84297 0.28782 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 4 2.39153 3.22278 0.21358 2.79720 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 5 1.85964 1.31369 2.38310 0.72736 5 u - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 6 2.39153 3.22278 0.21358 2.79721 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 7 2.39153 3.22278 0.21358 2.79720 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 8 1.65879 2.12144 0.89479 1.26911 8 g - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 9 2.49123 0.28970 3.05866 2.10576 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 10 2.49123 0.28970 3.05866 2.10576 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 11 2.39153 3.22278 0.21358 2.79720 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 12 2.39153 3.22278 0.21358 2.79720 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 13 2.49123 0.28970 3.05866 2.10576 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 14 2.33860 2.34983 2.84297 0.28782 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 15 2.33860 2.34983 2.84297 0.28782 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 16 2.33860 2.34983 2.84297 0.28782 16 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 17 2.33860 2.34983 2.84297 0.28782 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 18 2.33860 2.34983 2.84297 0.28782 18 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 19 2.33860 2.34983 2.84297 0.28782 19 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 20 0.21409 2.94509 2.69852 2.61975 20 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 21 2.49123 0.28970 3.05866 2.10576 21 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 22 2.33860 2.34983 2.84297 0.28782 22 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 23 2.33860 2.34983 2.84297 0.28782 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 24 2.39153 3.22278 0.21358 2.79720 24 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 25 2.33860 2.34983 2.84297 0.28782 25 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 26 2.61655 0.37231 2.36582 1.93840 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 27 2.66180 1.68193 2.37490 0.42903 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 28 2.39858 2.93207 0.22365 2.87754 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 29 2.90455 0.32429 2.64025 1.89151 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 30 2.39856 2.93204 0.22366 2.87750 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 31 2.39830 2.93178 0.22373 2.87713 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 32 2.90323 0.32449 2.63970 1.89130 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.13568 3.82596 2.25306 1.46634 0.26236 1.09861 0.40547 33 2.29766 2.75620 0.26239 2.70657 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.04872 3.73901 3.73901 1.46634 0.26236 0.34705 1.22680 34 2.71102 0.39713 2.37016 1.78488 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 35 2.87516 0.32879 2.62771 1.88683 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 36 2.33860 2.34983 2.84297 0.28782 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 37 2.33860 2.34983 2.84297 0.28782 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 38 2.39153 3.22278 0.21358 2.79721 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 39 2.16232 2.80260 0.28229 2.65592 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.13568 3.82596 2.25306 1.46634 0.26236 1.09861 0.40547 40 2.05466 2.62669 0.33136 2.50592 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04872 3.73901 3.73901 1.46634 0.26236 1.91995 0.15854 41 2.92569 0.30603 2.58496 2.00539 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04872 3.73901 3.73901 1.46634 0.26236 0.34705 1.22680 42 2.16536 2.80624 0.28110 2.66064 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 43 3.09196 0.26221 2.76236 2.10295 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 44 3.09327 0.26205 2.76289 2.10320 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 45 2.16654 2.80765 0.28063 2.66247 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 46 3.09685 0.26161 2.76434 2.10390 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 47 0.48741 2.55526 1.51865 2.41793 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 48 2.18871 2.19844 0.37414 2.41819 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 49 2.49123 0.28970 3.05866 2.10576 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 50 1.12733 2.38481 0.81034 1.97119 50 g - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 51 2.33860 2.34983 2.84297 0.28782 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 52 0.21409 2.94509 2.69852 2.61975 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 53 2.49123 0.28970 3.05866 2.10576 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 54 1.50236 2.58800 0.53017 2.17403 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 55 0.21409 2.94509 2.69852 2.61975 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 56 0.51591 2.40774 1.70099 2.03622 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 57 2.49123 0.28970 3.05866 2.10576 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 58 0.21409 2.94509 2.69852 2.61975 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 59 2.49123 0.28970 3.05866 2.10576 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 60 0.49437 2.42554 1.74961 2.05752 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 61 2.49123 0.28970 3.05866 2.10576 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 62 0.51591 2.40774 1.70099 2.03622 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 63 2.39153 3.22278 0.21358 2.79720 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 64 2.49123 0.28970 3.05866 2.10576 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 65 0.56303 2.19581 2.20287 1.56655 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 66 1.81659 2.38042 0.58154 1.68271 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 67 2.33860 2.34983 2.84297 0.28782 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 68 2.39153 3.22278 0.21358 2.79720 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 69 0.21409 2.94509 2.69852 2.61975 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 70 2.33860 2.34983 2.84297 0.28782 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 71 2.39153 3.22278 0.21358 2.79720 71 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 72 2.01175 0.62062 2.57160 1.37744 72 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 73 1.80361 0.70794 1.91255 1.63508 73 c - - : 1.38629 1.38629 1.38629 1.38629 0.02254 3.80392 * 1.46634 0.26236 0.00000 * //