INFERNAL1/a [1.1.4 | Dec 2020] NAME eeev_FSE ACC RF01839 DESC eastern equine encephalitis ribosomal frameshift element STATES 223 NODES 65 CLEN 73 W 89 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 13:56:35 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 1.497070 CKSUM 2219213943 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 87.50 NC 54.40 EFP7GF -8.6958 0.71886 ECMLC 0.60484 -9.77177 0.63369 1600000 649372 0.001848 ECMGC 0.41441 -17.90323 -4.65145 1600000 97069 0.004121 ECMLI 0.55615 -7.66895 2.35634 1600000 316665 0.003789 ECMGI 0.42464 -13.00211 -0.96729 1600000 66300 0.006033 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 89 109 -6.759 -6.966 -0.061 -5.380 IL 1 1 2 1 4 1 25 93 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 92 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 25 89 109 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 4 2 3 5 3 0 19 87 107 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 24 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 24 88 107 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 7 5 3 8 3 0 19 86 106 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 23 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 23 87 106 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 10 8 3 11 3 0 18 85 105 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 22 86 105 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 13 11 3 14 3 0 17 84 104 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 22 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 1 22 85 104 -7.790 -0.023 -6.444 -0.592 0.084 -1.338 0.912 D 16 14 3 17 3 0 16 83 103 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 21 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 21 84 103 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 19 17 3 20 3 0 15 82 102 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 20 82 102 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 22 20 3 23 3 0 15 81 101 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - g - - - ML 24 23 3 26 3 1 19 81 101 -7.790 -0.023 -6.444 -0.325 -0.987 0.648 0.177 D 25 23 3 26 3 0 14 80 100 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 18 80 100 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 28 26 3 29 3 0 13 79 99 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 18 79 99 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 31 29 3 32 3 0 12 78 97 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 17 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 17 78 98 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 34 32 3 35 3 0 12 77 96 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 16 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 16 77 96 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 37 35 3 38 3 0 11 76 95 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 15 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 15 76 95 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 40 38 3 41 3 0 10 75 94 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 15 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 15 75 94 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 43 41 3 44 3 0 9 74 93 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 14 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 14 74 93 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 46 44 3 47 3 0 8 73 92 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 13 73 92 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 49 47 3 50 3 0 8 71 91 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 12 72 91 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 52 50 3 53 3 0 7 70 90 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 11 71 90 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 55 53 3 56 3 0 6 69 89 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 11 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 57 56 3 59 3 1 11 70 89 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 58 56 3 59 3 0 5 68 88 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 10 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 10 68 87 -7.790 -0.023 -6.444 1.632 -2.023 -1.690 -1.533 D 61 59 3 62 3 0 4 67 86 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 9 67 86 -7.790 -0.023 -6.444 -1.327 1.490 -2.133 -0.827 D 64 62 3 65 3 0 4 66 85 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 8 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 66 65 3 68 3 1 8 66 85 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 67 65 3 68 3 0 3 65 84 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 8 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 7 65 84 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 70 68 3 71 3 0 2 64 83 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 7 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 7 64 83 -7.790 -0.023 -6.444 -1.208 -2.365 1.621 -1.750 D 73 71 3 74 3 0 2 63 82 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 6 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 6 63 82 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 76 74 3 77 3 0 1 62 80 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 5 64 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 73 - c - - MR 78 77 3 80 3 1 5 62 81 -8.192 -0.021 -6.510 -0.491 0.887 -0.713 -0.270 D 79 77 3 80 3 0 0 60 79 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 4 63 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 72 - C - - MR 81 80 3 83 3 1 5 61 80 -8.192 -0.021 -6.510 -0.772 1.026 -1.564 0.057 D 82 80 3 83 3 0 0 59 78 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 3 62 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 71 - G - - MR 84 83 3 86 3 1 4 60 79 -8.192 -0.021 -6.510 -1.208 -2.365 1.621 -1.750 D 85 83 3 86 3 0 0 58 77 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 3 61 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 70 - U - - MR 87 86 3 89 3 1 3 59 78 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 88 86 3 89 3 0 0 57 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 2 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 69 - A - - MR 90 89 3 92 3 1 3 58 77 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 91 89 3 92 3 0 0 56 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 2 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 68 - G - - MR 93 92 3 95 3 1 3 57 76 -8.192 -0.021 -6.510 -1.208 -2.365 1.621 -1.750 D 94 92 3 95 3 0 0 55 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 67 - U - - MR 96 95 3 98 3 1 2 56 74 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 97 95 3 98 3 0 0 54 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 66 - G - - MR 99 98 3 101 3 1 2 55 73 -8.192 -0.021 -6.510 -0.514 -1.317 1.084 -0.362 D 100 98 3 101 3 0 0 53 72 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 65 - A - - MR 102 101 3 104 3 1 2 54 72 -8.192 -0.021 -6.510 1.140 -1.092 -1.093 -0.221 D 103 101 3 104 3 0 0 52 71 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 64 - C - - MR 105 104 3 107 3 1 1 53 71 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 106 104 3 107 3 0 0 51 70 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 63 - G - - MR 108 107 3 110 3 1 1 52 70 -8.192 -0.021 -6.510 -1.208 -2.365 1.621 -1.750 D 109 107 3 110 3 0 0 50 69 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 62 - A - - MR 111 110 3 113 3 1 1 51 69 -8.192 -0.021 -6.510 1.206 -1.366 -0.438 -0.821 D 112 110 3 113 3 0 0 49 68 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 61 - C - - MR 114 113 3 116 3 1 1 50 68 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 115 113 3 116 3 0 0 48 67 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 60 - A - - MR 117 116 3 119 3 1 1 49 67 -8.192 -0.021 -6.510 1.236 -1.388 -0.502 -0.848 D 118 116 3 119 3 0 0 47 66 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 59 - C - - MR 120 119 3 122 3 1 1 48 66 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 121 119 3 122 3 0 0 46 65 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 58 - A - - MR 123 122 3 125 3 1 1 47 65 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 124 122 3 125 3 0 0 45 64 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 57 - C - - MR 126 125 3 128 3 1 1 46 64 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 127 125 3 128 3 0 0 44 63 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 56 - A - - MR 129 128 3 131 3 1 1 45 63 -8.192 -0.021 -6.510 1.206 -1.366 -0.438 -0.821 D 130 128 3 131 3 0 0 43 62 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 55 - A - - MR 132 131 3 134 3 1 1 44 62 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 133 131 3 134 3 0 0 42 61 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 54 - G - - MR 135 134 3 137 3 1 1 43 61 -8.192 -0.021 -6.510 -0.114 -1.594 1.164 -0.990 D 136 134 3 137 3 0 0 41 60 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 53 - C - - MR 138 137 3 140 3 1 1 42 60 -8.192 -0.021 -6.510 -1.327 1.490 -2.133 -0.827 D 139 137 3 140 3 0 0 40 59 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 52 - A - - MR 141 140 3 143 3 1 1 41 59 -8.192 -0.021 -6.510 1.632 -2.023 -1.690 -1.533 D 142 140 3 143 3 0 0 39 58 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 42 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 51 - U - - MR 144 143 3 146 3 1 1 40 58 -8.192 -0.021 -6.510 -1.171 -1.224 -1.886 1.515 D 145 143 3 146 3 0 0 38 57 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 50 - g - - MR 147 146 3 149 3 1 1 39 57 -8.192 -0.021 -6.510 0.373 -1.337 0.773 -0.736 D 148 146 3 149 3 0 0 37 56 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 49 - C - - MR 150 149 3 152 5 1 1 38 56 -6.942 -0.043 -6.758 -6.970 -7.861 -1.327 1.490 -2.133 -0.827 D 151 149 3 152 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 26 48 C G - - MP 153 152 3 157 6 2 2 37 55 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.395 -3.353 -3.428 -0.040 -2.815 -1.021 3.303 -3.419 -3.480 0.273 -3.901 -1.603 0.653 -3.622 -0.688 -2.502 ML 154 152 3 157 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 27 47 U A - - MP 159 158 6 163 6 2 2 35 53 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -3.843 -3.654 -3.718 0.024 -2.738 -4.313 1.581 -3.408 -3.727 0.338 -4.117 -1.563 3.131 -4.006 -0.423 -2.583 ML 160 158 6 163 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 28 46 G C - - MP 165 164 6 169 6 2 2 33 51 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 166 164 6 169 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 29 45 C G - - MP 171 170 6 175 6 2 2 31 49 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 172 170 6 175 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 30 44 G C - - MP 177 176 6 181 6 2 2 29 47 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 178 176 6 181 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 31 43 G C - - MP 183 182 6 187 6 2 2 27 45 -9.038 -8.978 -0.022 -7.754 -8.034 -8.429 -4.404 -2.935 -4.479 0.419 -4.757 -4.557 -0.204 -4.692 -4.099 3.546 -4.461 -0.624 -0.599 -4.244 -2.224 -3.361 ML 184 182 6 187 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 32 42 C G - - MP 189 188 6 193 6 2 2 25 43 -9.038 -8.978 -0.063 -7.754 -8.034 -5.052 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 190 188 6 193 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 33 41 G C - - MP 195 194 6 199 6 2 2 23 41 -8.998 -8.938 -0.023 -7.714 -7.994 -8.389 -4.199 -2.839 -4.263 0.548 -4.468 -4.469 0.038 -4.455 -3.950 3.475 -4.330 -0.525 -0.365 -4.106 -1.973 -3.149 ML 196 194 6 199 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 20 38 -9.574 -8.273 -4.070 -1.546 -4.769 -0.845 IL 199 199 5 199 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 34 40 C G - - MP 201 200 6 205 6 2 2 21 39 -8.998 -8.938 -0.023 -7.714 -7.994 -8.389 -4.005 -3.853 -3.781 -0.144 -2.633 -4.262 3.338 -3.386 -3.818 0.195 -4.132 -1.796 0.928 -4.106 -0.332 -2.678 ML 202 200 6 205 6 1 1 20 39 -6.678 -7.024 -0.846 -1.433 -6.874 -4.403 0.062 -0.820 0.645 -0.276 MR 203 200 6 205 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 6 205 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 35 39 C G - - MP 207 206 6 211 4 2 2 19 37 -6.759 -6.966 -0.061 -5.380 -4.203 -4.075 -3.949 -0.342 -2.749 -4.406 3.427 -3.523 -3.989 -0.045 -4.285 -2.019 0.797 -4.294 -0.449 -2.842 ML 208 206 6 211 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 210 206 6 211 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 211 211 5 211 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 212 212 6 212 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 36 - U - - - ML 213 212 6 215 3 1 1 15 33 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 214 212 6 215 3 0 0 15 33 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 37 - U - - - ML 216 215 3 218 3 1 1 13 32 -7.790 -0.023 -6.444 -1.171 -1.224 -1.886 1.515 D 217 215 3 218 3 0 0 13 32 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 38 - G - - - ML 219 218 3 221 2 1 1 1 1 * 0.000 -1.208 -2.365 1.621 -1.750 D 220 218 3 221 2 0 0 0 0 * 0.000 IL 221 221 3 221 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 64 ] - - - - - - E 222 221 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME eeev_FSE ACC RF01839 DESC eastern equine encephalitis ribosomal frameshift element LENG 73 MAXL 162 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Mar 5 13:56:36 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 6 EFFN 1.772461 CKSUM 2219213943 STATS LOCAL MSV -7.9479 0.71886 STATS LOCAL VITERBI -9.0842 0.71886 STATS LOCAL FORWARD -3.4691 0.71886 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.67215 1.30985 1.24191 1.37252 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 0.00000 * 1 2.39153 3.22278 0.21358 2.79720 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 2 2.49123 0.28970 3.05866 2.10576 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 3 2.33860 2.34983 2.84297 0.28782 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 4 2.39153 3.22278 0.21358 2.79720 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 5 1.85964 1.31369 2.38310 0.72736 5 u - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 6 2.39153 3.22278 0.21358 2.79721 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 7 2.39153 3.22278 0.21358 2.79720 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 8 1.65879 2.12144 0.89479 1.26911 8 g - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 9 2.49123 0.28970 3.05866 2.10576 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 10 2.49123 0.28970 3.05866 2.10576 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 11 2.39153 3.22278 0.21358 2.79720 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 12 2.39153 3.22278 0.21358 2.79720 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 13 2.49123 0.28970 3.05866 2.10576 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 14 2.33860 2.34983 2.84297 0.28782 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 15 2.33860 2.34983 2.84297 0.28782 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 16 2.33860 2.34983 2.84297 0.28782 16 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 17 2.33860 2.34983 2.84297 0.28782 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 18 2.33860 2.34983 2.84297 0.28782 18 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 19 2.33860 2.34983 2.84297 0.28782 19 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 20 0.21409 2.94509 2.69852 2.61975 20 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 21 2.49123 0.28970 3.05866 2.10576 21 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 22 2.33860 2.34983 2.84297 0.28782 22 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 23 2.33860 2.34983 2.84297 0.28782 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 24 2.39153 3.22278 0.21358 2.79720 24 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 25 2.33860 2.34983 2.84297 0.28782 25 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 26 2.61655 0.37231 2.36582 1.93840 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 27 2.66180 1.68193 2.37490 0.42903 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 28 2.39858 2.93207 0.22365 2.87754 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 29 2.90455 0.32429 2.64025 1.89151 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 30 2.39856 2.93204 0.22366 2.87750 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 31 2.39830 2.93178 0.22373 2.87713 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 32 2.90323 0.32449 2.63970 1.89130 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.13568 3.82596 2.25306 1.46634 0.26236 1.09861 0.40547 33 2.29766 2.75620 0.26239 2.70657 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.04872 3.73901 3.73901 1.46634 0.26236 0.34705 1.22680 34 2.71102 0.39713 2.37016 1.78488 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 35 2.87516 0.32879 2.62771 1.88683 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 36 2.33860 2.34983 2.84297 0.28782 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 37 2.33860 2.34983 2.84297 0.28782 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 38 2.39153 3.22278 0.21358 2.79720 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 39 2.16232 2.80260 0.28229 2.65592 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.13568 3.82596 2.25306 1.46634 0.26236 1.09861 0.40547 40 2.05466 2.62669 0.33136 2.50592 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04872 3.73901 3.73901 1.46634 0.26236 1.91995 0.15854 41 2.92569 0.30603 2.58496 2.00539 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04872 3.73901 3.73901 1.46634 0.26236 0.34705 1.22680 42 2.16536 2.80624 0.28110 2.66064 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 43 3.09196 0.26221 2.76236 2.10295 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 44 3.09327 0.26205 2.76289 2.10320 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 45 2.16654 2.80765 0.28063 2.66247 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 46 3.09685 0.26161 2.76434 2.10390 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 47 0.48741 2.55526 1.51865 2.41793 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 48 2.18871 2.19844 0.37414 2.41819 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 49 2.49123 0.28970 3.05866 2.10576 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 50 1.12733 2.38481 0.81034 1.97119 50 g - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 51 2.33860 2.34983 2.84297 0.28782 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 52 0.21409 2.94509 2.69852 2.61975 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 53 2.49123 0.28970 3.05866 2.10576 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 54 1.50236 2.58800 0.53017 2.17403 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 55 0.21409 2.94509 2.69852 2.61975 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 56 0.51591 2.40774 1.70099 2.03622 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 57 2.49123 0.28970 3.05866 2.10576 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 58 0.21409 2.94509 2.69852 2.61975 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 59 2.49123 0.28970 3.05866 2.10576 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 60 0.49437 2.42554 1.74961 2.05752 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 61 2.49123 0.28970 3.05866 2.10576 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 62 0.51591 2.40774 1.70099 2.03622 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 63 2.39153 3.22278 0.21358 2.79720 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 64 2.49123 0.28970 3.05866 2.10576 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 65 0.56303 2.19581 2.20287 1.56655 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 66 1.81659 2.38042 0.58154 1.68271 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 67 2.33860 2.34983 2.84297 0.28782 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 68 2.39153 3.22278 0.21358 2.79720 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 69 0.21409 2.94509 2.69852 2.61975 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 70 2.33860 2.34983 2.84297 0.28782 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 71 2.39153 3.22278 0.21358 2.79720 71 G - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 72 2.01175 0.62062 2.57160 1.37744 72 C - - : 1.38629 1.38629 1.38629 1.38629 0.04457 3.82596 3.82596 1.46634 0.26236 1.09861 0.40547 73 1.80361 0.70794 1.91255 1.63508 73 c - - : 1.38629 1.38629 1.38629 1.38629 0.02254 3.80392 * 1.46634 0.26236 0.00000 * //