# STOCKHOLM 1.0
#=GF ID eeev_FSE
#=GF AC RF01839
#=GF DE eastern equine encephalitis ribosomal frameshift element
#=GF AU Boursnell C; 0000-0002-3494-4451
#=GF GA 80.0
#=GF NC 40.9
#=GF TC 95.5
#=GF SE Published; PMID:18822126
#=GF SS Published; PMID:18822126
#=GF TP Cis-reg; frameshift_element;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.63 -Z 2958934 CM SEQDB
#=GF DR SO; 0001427; cis_regulatory_frameshift_element;
#=GF DR URL; http://recode.ucc.ie/recode/r201065;
#=GF DR GO; 0075523; viral translational frameshifting;
#=GF RN [1]
#=GF RM 18822126
#=GF RT Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma.
#=GF RA Firth AE, Chung BY, Fleeton MN, Atkins JF
#=GF RL Virol J. 2008;5:108.
#=GF WK Eastern_equine_encephalitis_virus
#=GF SQ 6

AF159551.1/2412-2484 GCUGUGGGCCGGCUUUUUUACUUGUCUGCGGCGCCUUGGGCGCCGCAGCGUACGAACACACAGCAGUGAUGCC
AF159555.1/2412-2484 GCUGUGGGCCGGCUUUUUUACUUGUCUGCGGCGCCUUGGGCGCCGCACCGUACAAACACACAGCAUUGAUGCG
DQ241303.1/9897-9969 GCUGCGGUCCGGCUUUUUUACUUGUCUGCGGCGCCUUGGGCGCCGCAGCAUACGAACACGCAGCAGUGAUGCC
EF151503.1/9916-9988 GCUGCGGUCCGGCUUUUUUACUUGUCUGCGGCGCCUUGGGCGCCGCAGCAUACGAGCACACGGCUGUGAUGUC
X05816.1/2526-2595   GCUGUGGGCCGGCUUUUUUACUUGUCUGCGGC-GCUUGG--GCCGCAGCGUACGAACACACAGCAGUGAUGCC
U01558.1/2412-2484   GCUGUGGGCCGGCUUUUUUACUUGUCUGCGGCGCCUUGGGCGCCGCAGCGUACGAACACACAGCAGUGAUGCC
#=GC SS_cons         :::::::::::::::::::::::::<<<<<<<<<<___>>>>>>>>>>:::::::::::::::::::::::::
#=GC RF              GCUGuGGgCCGGCUUUUUUACUUGUCUGCGGCGCCUUGGGCGCCGCAGCgUACGAACACACAGCAGUGAUGCc
//
