# STOCKHOLM 1.0
#=GF ID toga_FSE
#=GF AC RF01837
#=GF DE togavirus ribosomal frameshift element
#=GF AU Boursnell C; 0000-0002-3494-4451
#=GF GA 40.0
#=GF NC 37.5
#=GF TC 40.2
#=GF SE Published; PMID:18822126
#=GF SS Published; PMID:18822126
#=GF TP Cis-reg; frameshift_element;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.17 -Z 2958934 CM SEQDB
#=GF DR SO; 0001427; cis_regulatory_frameshift_element;
#=GF DR URL; http://recode.ucc.ie/recode/r201068;
#=GF DR GO; 0075523; viral translational frameshifting;
#=GF RN [1]
#=GF RM 18822126
#=GF RT Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma.
#=GF RA Firth AE, Chung BY, Fleeton MN, Atkins JF
#=GF RL Virol J. 2008;5:108.
#=GF WK Alphavirus
#=GF SQ 3

AJ238578.1/2651-2679   GAGGGUGGUCGGCUCUGCUGGUCAUCCUU
AJ316244.1/10393-10421 GAGGGUGGUCAGCCCUGCUGGUCAUCCUU
DQ149204.1/10267-10295 GAGGGUGGUCAGCUCUGCUGGUCAUCCUU
#=GC SS_cons           <<<<<<<--<<<<___>>>>-->>>>>>>
#=GC RF                GAGGGUGGUCaGCUCUGCuGGUCAUCCUU
//
