INFERNAL1/a [1.1.4 | Dec 2020] NAME weev_FSE ACC RF01836 DESC ribosomal frameshift site STATES 85 NODES 18 CLEN 27 W 40 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 13:56:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 6.000000 CKSUM 2545895374 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.60 NC 39.20 EFP7GF -8.5095 0.73647 ECMLC 0.55417 -6.63556 5.06477 1600000 785513 0.001528 ECMGC 0.47238 -14.37841 1.89958 1600000 873957 0.000458 ECMLI 0.52696 -6.67043 5.50012 1600000 731982 0.001639 ECMGI 0.48163 -12.55842 3.04602 1600000 734576 0.000545 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 40 59 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 IL 1 1 2 1 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 27 G C - - MP 3 2 3 7 6 2 2 40 59 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -6.670 -4.061 -7.288 -1.204 -7.835 -5.412 -2.726 -7.440 -5.412 3.888 -5.658 -1.882 -3.087 -5.667 -4.925 -6.140 ML 4 2 3 7 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 1 40 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 26 G C - - MP 9 8 6 13 6 2 2 38 57 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -6.670 -4.061 -7.288 -1.204 -7.835 -5.412 -2.726 -7.440 -5.412 3.888 -5.658 -1.882 -3.087 -5.667 -4.925 -6.140 ML 10 8 6 13 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 25 C G - - MP 15 14 6 19 6 2 2 36 55 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -6.834 -6.934 -6.087 -3.126 -4.489 -6.200 3.904 -5.571 -6.334 -3.072 -6.219 -5.044 -1.337 -6.755 -2.378 -5.137 ML 16 14 6 19 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 24 G C - - MP 21 20 6 25 6 2 2 34 53 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -6.670 -4.061 -7.288 -1.204 -7.835 -5.412 -2.726 -7.440 -5.412 3.888 -5.658 -1.882 -3.087 -5.667 -4.925 -6.140 ML 22 20 6 25 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 23 U A - - MP 27 26 6 31 6 2 2 32 51 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -5.350 -5.463 -4.928 -1.711 1.978 -5.238 0.817 -4.337 -4.987 -1.628 -5.220 -3.615 3.144 -5.343 -1.186 -3.823 ML 28 26 6 31 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 22 C G - - MP 33 32 6 37 6 2 2 30 49 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -6.834 -6.934 -6.087 -3.126 -4.489 -6.200 3.904 -5.571 -6.334 -3.072 -6.219 -5.044 -1.337 -6.755 -2.378 -5.137 ML 34 32 6 37 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 21 u a - - MP 39 38 6 43 6 2 2 28 47 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -2.847 -2.958 -2.984 0.328 -2.613 -3.799 1.299 -3.097 -3.015 0.356 -3.556 -1.312 2.765 -1.470 1.005 -1.049 ML 40 38 6 43 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 20 a u - - MP 45 44 6 49 6 2 2 26 45 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -4.064 0.854 -4.101 2.566 -4.970 -5.112 -0.638 -4.479 -4.136 2.048 -4.598 1.178 -0.843 -4.298 -2.499 -3.007 ML 46 44 6 49 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 19 C G - - MP 51 50 6 55 6 2 2 24 43 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -6.834 -6.934 -6.087 -3.126 -4.489 -6.200 3.904 -5.571 -6.334 -3.072 -6.219 -5.044 -1.337 -6.755 -2.378 -5.137 ML 52 50 6 55 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 18 C G - - MP 57 56 6 61 6 2 2 22 41 -9.635 -9.574 -0.015 -8.350 -8.630 -9.025 -6.834 -6.934 -6.087 -3.126 -4.489 -6.200 3.904 -5.571 -6.334 -3.072 -6.219 -5.044 -1.337 -6.755 -2.378 -5.137 ML 58 56 6 61 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 17 U A - - MP 63 62 6 67 4 2 2 20 39 -8.056 -8.263 -0.024 -6.677 -7.058 -6.921 -6.575 -3.159 -5.104 -6.888 -0.807 -5.937 -6.554 -3.163 -6.821 -4.808 3.894 -7.020 -2.691 -4.739 ML 64 62 6 67 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 69 68 6 71 3 1 1 17 35 -9.016 -0.010 -7.670 -0.964 -0.615 1.035 -0.349 D 70 68 6 71 3 0 0 17 35 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 72 71 3 74 3 1 1 15 34 -9.016 -0.010 -7.670 -1.837 -2.755 1.593 -0.847 D 73 71 3 74 3 0 0 16 34 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - g - - - ML 75 74 3 77 3 1 1 14 32 -9.016 -0.010 -7.670 -1.232 0.581 0.718 -1.206 D 76 74 3 77 3 0 0 15 33 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 78 77 3 80 3 1 1 12 31 -9.016 -0.010 -7.670 -3.499 -4.936 1.936 -4.240 D 79 77 3 80 3 0 0 13 32 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 81 80 3 83 2 1 1 1 1 * 0.000 1.935 -4.373 -3.846 -4.088 D 82 80 3 83 2 0 0 0 0 * 0.000 IL 83 83 3 83 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 17 ] - - - - - - E 84 83 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME weev_FSE ACC RF01836 DESC ribosomal frameshift site LENG 27 MAXL 92 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Mar 5 13:56:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 6 EFFN 5.938477 CKSUM 2545895374 STATS LOCAL MSV -6.1258 0.73647 STATS LOCAL VITERBI -6.9105 0.73647 STATS LOCAL FORWARD -3.2323 0.73647 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.78025 1.18410 0.96618 1.93205 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 0.00000 * 1 3.40753 4.40100 0.05963 4.38220 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 2 3.39230 4.37567 0.06098 4.34710 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 3 4.49578 0.06673 4.39245 3.19360 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 4 3.37834 4.35267 0.06223 4.31552 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 5 3.62717 1.02184 3.48000 0.54014 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 6 4.45970 0.06777 4.37071 3.18638 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 7 2.24972 1.73337 2.12223 0.51397 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 8 0.71882 3.02604 0.90395 2.82683 8 a - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 9 4.44644 0.06817 4.36263 3.18368 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 10 4.44376 0.06825 4.36100 3.18313 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 11 4.48156 3.19389 4.39706 0.06683 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 12 2.04864 1.81183 0.67128 1.62618 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 13 2.65029 3.28585 0.28395 1.97217 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 14 2.23097 0.98591 0.89130 2.21316 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 15 3.80017 4.79522 0.04502 4.31380 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 16 0.04577 4.40411 4.03961 4.20619 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 17 0.07661 4.59274 3.02006 4.21145 17 A - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 18 3.45699 4.51527 0.05846 4.24624 18 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 19 3.45815 4.51734 0.05836 4.24845 19 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 20 3.06213 0.98029 2.82311 0.65664 20 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 21 0.80025 2.15288 1.23129 1.94687 21 a - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 22 3.46394 4.52772 0.05788 4.25954 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 23 0.22730 3.63557 1.94377 3.38765 23 A - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 24 4.44362 0.07628 4.22828 3.05519 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 25 3.47859 4.55421 0.05668 4.28790 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 26 4.49206 0.07486 4.25367 3.06356 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.02469 4.40672 4.40672 1.46634 0.26236 1.09861 0.40547 27 4.53981 0.07353 4.27813 3.07149 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.01242 4.39445 * 1.46634 0.26236 0.00000 * //