# STOCKHOLM 1.0
#=GF ID weev_FSE
#=GF AC RF01836
#=GF DE ribosomal frameshift site
#=GF AU Boursnell C; 0000-0002-3494-4451
#=GF GA 40.0
#=GF NC 39.5
#=GF TC 40.6
#=GF SE Published; PMID:19895695
#=GF SS Published; PMID:19895695
#=GF TP Cis-reg; frameshift_element;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 33.23 -Z 2958934 CM SEQDB
#=GF DR SO; 0001427; cis_regulatory_frameshift_element;
#=GF DR URL; http://recode.ucc.ie/recode/r200969;
#=GF DR GO; 0075523; viral translational frameshifting;
#=GF RN [1]
#=GF RM 19895695
#=GF RT Bioinformatic evidence for a stem-loop structure 5'-adjacent to the
#=GF RT IGR-IRES and for an overlapping gene in the bee paralysis dicistroviruses.
#=GF RA Firth AE, Wang QS, Jan E, Atkins JF
#=GF RL Virol J. 2009;6:193.
#=GF WK Western_equine_encephalitis_virus
#=GF SQ 6

EU708192.1/1780-1806 GGCGUCUGCCUGGGGAAGGCAGACGCC
M24200.1/1600-1626   GGCGCCUACCUGGCGAAGGUNGACGCC
AF339479.1/3017-3043 GGCGUCUACCUCUCGAAGGCAGACGCC
AF103728.1/9960-9986 GGCGUCUACCUGGGGAAGGUAGACGCC
DQ393792.1/2365-2391 GGCGUCUGCCUGGGGAAGGUGGACGCC
U90536.1/2446-2472   GGCGCCUACCUUGCGAAGGUAGACGCC
#=GC SS_cons         <<<<<<<<<<<_____>>>>>>>>>>>
#=GC RF              GGCGUCuaCCUGGgGAAGGuaGACGCC
//
