INFERNAL1/a [1.1.5 | Sep 2023] NAME astro_FSE ACC RF01833 DESC ribosomal frameshift site STATES 169 NODES 50 CLEN 55 W 69 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 19:16:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01833/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.222656 CKSUM 3788193102 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 82.20 NC 36.50 EFP7GF -10.7785 0.71922 ECMLC 0.68074 -8.73375 0.53731 1600000 660816 0.001816 ECMGC 0.44479 -17.61490 -4.03238 1600000 168197 0.002378 ECMLI 0.67768 -7.01888 1.40894 1600000 362744 0.003308 ECMGI 0.49426 -13.12437 -1.71305 1600000 112599 0.003552 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 69 88 -6.971 -8.216 -0.075 -4.670 IL 1 1 2 1 4 1 11 71 90 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 55 - u - - MR 3 2 3 5 3 1 13 69 88 -8.455 -0.017 -6.773 -0.793 0.475 -1.580 0.764 D 4 2 3 5 3 0 7 68 87 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 12 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 54 - U - - MR 6 5 3 8 3 1 12 68 87 -8.455 -0.017 -6.773 -0.882 -0.098 -1.639 1.139 D 7 5 3 8 3 0 6 67 86 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 11 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 53 - A - - MR 9 8 3 11 3 1 11 67 86 -8.455 -0.017 -6.773 1.163 -1.539 -0.131 -0.991 D 10 8 3 11 3 0 5 66 85 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 10 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 52 - A - - MR 12 11 3 14 3 1 10 66 85 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 13 11 3 14 3 0 5 65 84 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 9 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 51 - A - - MR 15 14 3 17 3 1 10 65 84 -8.455 -0.017 -6.773 1.095 -0.360 -1.220 -0.608 D 16 14 3 17 3 0 4 64 83 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 9 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 50 - G - - MR 18 17 3 20 3 1 9 64 83 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 19 17 3 20 3 0 3 63 82 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 8 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 49 - G - - MR 21 20 3 23 3 1 8 63 82 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 22 20 3 23 3 0 2 62 81 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 7 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 48 - U - - MR 24 23 3 26 3 1 8 62 81 -8.455 -0.017 -6.773 -1.687 -1.648 -2.430 1.671 D 25 23 3 26 3 0 1 61 80 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 6 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 47 - A - - MR 27 26 3 29 3 1 7 61 80 -8.455 -0.017 -6.773 1.207 -1.561 -0.220 -1.020 D 28 26 3 29 3 0 1 60 79 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 5 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 46 - C - - MR 30 29 3 32 3 1 6 60 79 -8.455 -0.017 -6.773 -2.005 1.688 -2.835 -1.365 D 31 29 3 32 3 0 0 59 78 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 5 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 45 - G - - MR 33 32 3 35 3 1 6 59 78 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 34 32 3 35 3 0 0 58 77 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 4 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 44 - U - - MR 36 35 3 38 3 1 5 58 77 -8.455 -0.017 -6.773 -1.687 -1.648 -2.430 1.671 D 37 35 3 38 3 0 0 57 76 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 43 - A - - MR 39 38 3 41 3 1 4 57 76 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 40 38 3 41 3 0 0 56 75 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 3 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 42 - G - - MR 42 41 3 44 3 1 4 56 75 -8.455 -0.017 -6.773 -1.809 -3.064 1.771 -2.451 D 43 41 3 44 3 0 0 55 74 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 41 - A - - MR 45 44 3 47 3 1 3 55 74 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 46 44 3 47 3 0 0 54 73 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 40 - U - - MR 48 47 3 50 3 1 3 54 73 -8.455 -0.017 -6.773 -1.687 -1.648 -2.430 1.671 D 49 47 3 50 3 0 0 53 72 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 39 - U - - MR 51 50 3 53 3 1 2 53 72 -8.455 -0.017 -6.773 -0.882 -0.098 -1.639 1.139 D 52 50 3 53 3 0 0 52 71 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 38 - A - - MR 54 53 3 56 3 1 2 52 71 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 55 53 3 56 3 0 0 51 70 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 37 - C - - MR 57 56 3 59 3 1 2 51 70 -8.455 -0.017 -6.773 -2.005 1.688 -2.835 -1.365 D 58 56 3 59 3 0 0 50 69 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 36 - U - - MR 60 59 3 62 3 1 1 50 69 -8.455 -0.017 -6.773 -1.687 -1.648 -2.430 1.671 D 61 59 3 62 3 0 0 49 68 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 35 - C - - MR 63 62 3 65 3 1 1 49 68 -8.455 -0.017 -6.773 -2.005 1.688 -2.835 -1.365 D 64 62 3 65 3 0 0 48 67 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 34 - A - - MR 66 65 3 68 3 1 1 48 67 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 67 65 3 68 3 0 0 47 66 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 33 - C - - MR 69 68 3 71 3 1 1 47 66 -8.455 -0.017 -6.773 -2.005 1.688 -2.835 -1.365 D 70 68 3 71 3 0 0 46 65 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 32 - C - - MR 72 71 3 74 3 1 1 46 65 -8.455 -0.017 -6.773 -0.986 1.068 -1.810 0.155 D 73 71 3 74 3 0 0 45 64 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 31 - A - - MR 75 74 3 77 3 1 1 45 64 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 76 74 3 77 3 0 0 44 63 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 30 - U - - MR 78 77 3 80 3 1 1 44 63 -8.455 -0.017 -6.773 -1.687 -1.648 -2.430 1.671 D 79 77 3 80 3 0 0 43 62 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 29 - u - - MR 81 80 3 83 3 1 1 43 62 -8.455 -0.017 -6.773 -0.795 0.531 -1.586 0.719 D 82 80 3 83 3 0 0 42 61 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 28 - A - - MR 84 83 3 86 3 1 1 42 61 -8.455 -0.017 -6.773 1.141 -0.445 -1.239 -0.650 D 85 83 3 86 3 0 0 41 60 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 27 - A - - MR 87 86 3 89 3 1 1 41 60 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 88 86 3 89 3 0 0 40 59 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 26 - A - - MR 90 89 3 92 3 1 1 40 59 -8.455 -0.017 -6.773 1.762 -2.590 -2.200 -2.154 D 91 89 3 92 3 0 0 39 58 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 25 - A - - MR 93 92 3 95 5 1 1 39 58 -7.188 -0.037 -7.003 -7.215 -8.107 1.762 -2.590 -2.200 -2.154 D 94 92 3 95 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 1 24 G C - - MP 96 95 3 100 6 2 2 38 57 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.956 -3.197 -5.078 0.056 -5.534 -4.776 -0.845 -5.334 -4.465 3.686 -4.787 -0.905 -1.224 -4.607 -2.894 -3.951 ML 97 95 3 100 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 2 23 G C - - MP 102 101 6 106 6 2 2 36 55 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.956 -3.197 -5.078 0.056 -5.534 -4.776 -0.845 -5.334 -4.465 3.686 -4.787 -0.905 -1.224 -4.607 -2.894 -3.951 ML 103 101 6 106 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 3 22 G C - - MP 108 107 6 112 6 2 2 34 53 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.956 -3.197 -5.078 0.056 -5.534 -4.776 -0.845 -5.334 -4.465 3.686 -4.787 -0.905 -1.224 -4.607 -2.894 -3.951 ML 109 107 6 112 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 4 21 C G - - MP 114 113 6 118 6 2 2 32 51 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.787 -4.713 -4.436 -0.925 -3.104 -4.817 3.618 -3.938 -4.494 -0.716 -4.729 -2.664 0.385 -4.840 -0.817 -3.326 ML 115 113 6 118 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 5 20 C G - - MP 120 119 6 124 6 2 2 30 49 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.787 -4.713 -4.436 -0.925 -3.104 -4.817 3.618 -3.938 -4.494 -0.716 -4.729 -2.664 0.385 -4.840 -0.817 -3.326 ML 121 119 6 124 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 6 19 C G - - MP 126 125 6 130 6 2 2 28 47 -9.153 -9.092 -0.020 -7.868 -8.148 -8.543 -4.787 -4.713 -4.436 -0.925 -3.104 -4.817 3.618 -3.938 -4.494 -0.716 -4.729 -2.664 0.385 -4.840 -0.817 -3.326 ML 127 125 6 130 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 7 18 C G - - MP 132 131 6 136 4 2 2 26 45 -7.063 -7.270 -0.049 -5.684 -4.787 -4.713 -4.436 -0.925 -3.104 -4.817 3.618 -3.938 -4.494 -0.716 -4.729 -2.664 0.385 -4.840 -0.817 -3.326 ML 133 131 6 136 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 8 - A - - - ML 138 137 6 140 3 1 1 23 42 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 139 137 6 140 3 0 0 22 41 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 9 - G - - - ML 141 140 3 143 3 1 1 22 41 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 142 140 3 143 3 0 0 21 40 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 10 - A - - - ML 144 143 3 146 3 1 1 21 40 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 145 143 3 146 3 0 0 20 39 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 11 - A - - - ML 147 146 3 149 3 1 1 20 39 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 148 146 3 149 3 0 0 19 38 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 12 - G - - - ML 150 149 3 152 3 1 1 19 37 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 151 149 3 152 3 0 0 18 37 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 13 - A - - - ML 153 152 3 155 3 1 1 17 36 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 154 152 3 155 3 0 0 17 36 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 14 - C - - - ML 156 155 3 158 3 1 1 16 35 -8.072 -0.019 -6.726 -2.005 1.688 -2.835 -1.365 D 157 155 3 158 3 0 0 16 34 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 15 - C - - - ML 159 158 3 161 3 1 1 15 33 -8.072 -0.019 -6.726 -2.005 1.688 -2.835 -1.365 D 160 158 3 161 3 0 0 15 33 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 16 - A - - - ML 162 161 3 164 3 1 1 13 31 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 163 161 3 164 3 0 0 13 32 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 17 - A - - - ML 165 164 3 167 2 1 1 1 1 * 0.000 1.163 -1.539 -0.131 -0.991 D 166 164 3 167 2 0 0 0 0 * 0.000 IL 167 167 3 167 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 168 167 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME astro_FSE ACC RF01833 DESC ribosomal frameshift site LENG 55 MAXL 135 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 19:16:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01833/CM NSEQ 4 EFFN 2.503906 CKSUM 3788193102 STATS LOCAL MSV -8.3427 0.71922 STATS LOCAL VITERBI -8.3642 0.71922 STATS LOCAL FORWARD -3.8401 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16404 1.34841 1.38543 1.72648 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 0.00000 * 1 2.63324 3.31615 0.15871 3.25397 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 2 2.63474 3.31800 0.15839 3.25653 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 3 2.63502 3.31835 0.15833 3.25700 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 4 3.27471 0.22195 3.05903 2.16907 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 5 3.27380 0.22204 3.05858 2.16891 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 6 3.27281 0.22214 3.05810 2.16874 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 7 3.27189 0.22224 3.05765 2.16857 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 8 0.14254 3.31647 3.03303 3.02833 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 9 2.77931 3.66778 0.13543 3.24302 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 10 0.14254 3.31647 3.03303 3.02833 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 11 0.14254 3.31647 3.03303 3.02833 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 12 2.77931 3.66778 0.13543 3.24302 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 13 0.14254 3.31647 3.03303 3.02833 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 14 2.93996 0.18348 3.51625 2.46452 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 15 2.93996 0.18348 3.51625 2.46452 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 16 0.14254 3.31647 3.03303 3.02833 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 17 0.55738 2.51895 1.47140 2.14436 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 18 2.44617 3.22492 0.19186 3.03257 18 G - - > 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 19 2.44668 3.22563 0.19172 3.03342 19 G - - > 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 20 2.44732 3.22654 0.19155 3.03449 20 G - - > 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 21 2.44815 3.22769 0.19133 3.03586 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 22 3.46243 0.18734 3.15729 2.33361 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 23 3.46730 0.18694 3.15946 2.33453 23 C - - > 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 24 3.47405 0.18639 3.16247 2.33579 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 25 0.14254 3.31647 3.03303 3.02833 25 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 26 0.14254 3.31647 3.03303 3.02833 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 27 0.14254 3.31647 3.03303 3.02833 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 28 0.56980 1.69645 2.30016 1.89188 28 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 29 1.99491 0.99338 2.54973 0.87816 29 u - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 30 2.68256 2.63422 3.20280 0.19944 30 U - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 31 0.14254 3.31647 3.03303 3.02833 31 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 32 2.14242 0.61160 2.72242 1.29306 32 C - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 33 2.93996 0.18348 3.51625 2.46452 33 C - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 34 0.14254 3.31647 3.03303 3.02833 34 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 35 2.93996 0.18348 3.51625 2.46452 35 C - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 36 2.68256 2.63422 3.20280 0.19944 36 U - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 37 2.93996 0.18348 3.51625 2.46452 37 C - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 38 0.14254 3.31647 3.03303 3.02833 38 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 39 2.06094 1.45266 2.59026 0.57320 39 U - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 40 2.68256 2.63422 3.20280 0.19944 40 U - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 41 0.14254 3.31647 3.03303 3.02833 41 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 42 2.77931 3.66778 0.13543 3.24302 42 G - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 43 0.14254 3.31647 3.03303 3.02833 43 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 44 2.68256 2.63422 3.20280 0.19944 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 45 2.77931 3.66778 0.13543 3.24302 45 G - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 46 2.93996 0.18348 3.51625 2.46452 46 C - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 47 0.52623 2.53561 1.53551 2.16620 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 48 2.68256 2.63422 3.20280 0.19944 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 49 2.77931 3.66778 0.13543 3.24302 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 50 2.77931 3.66778 0.13543 3.24302 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 51 0.60227 1.63450 2.28500 1.86040 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 52 0.14254 3.31647 3.03303 3.02833 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 53 0.55738 2.51895 1.47140 2.14436 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 54 2.06094 1.45266 2.59026 0.57320 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.09861 0.40547 55 1.99292 1.03319 2.54509 0.84545 55 u - - : 1.38629 1.38629 1.38629 1.38629 0.01883 3.98187 * 1.46634 0.26236 0.00000 * //