# STOCKHOLM 1.0
#=GF ID SAR11_0636
#=GF AC RF01827
#=GF DE SAR11_0636 sRNA
#=GF AU Moore B; 0000-0002-4074-1933
#=GF GA 67.0
#=GF NC 65.8
#=GF TC 86.1
#=GF SE Published; PMID:19531245
#=GF SS Published; PMID:19531245
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.65 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 19531245
#=GF RT Identification of candidate structured RNAs in the marine organism
#=GF RT 'Candidatus Pelagibacter ubique'.
#=GF RA Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ,
#=GF RA Breaker RR
#=GF RL BMC Genomics. 2009;10:268.
#=GF WK Pelagibacter_ubique
#=GF SQ 13

AACY020109561.1/586-675      GGUUGUAUUUUGAGUCCGUAAUUGAAUCAAAAGUGAAUCAAAACGUGAACAU-CAAAACCACAUUUUGUAUGCUUGUGGAUAACUUCAACC
EF107105.1/11251-11340       GGUUGUAUUUUGAGUCCGUAAUUGAAUCAAAACUGAAUCAAAACGUGAACAU-CGAAACUAUAUUUUGUAUGCUUGUGGAUAACUUUAACC
EF107103.1/360-271           AGUUGUAUUUUGAGUCUGUAACUGAAUCAAAAGUGAAUCAAAACGUGAACAU-CCAAACUACAUUUUGUGUGCUUGUGGAUAACUUCAACC
AAPV01000001.1/267511-267422 GGUUGUAUUUUGAGUCUGUAACUGAAUCAAAGGUGAAUCAAAACGUGAACAU-UGAAACUACAUUUUGUGCUCUUGUGGAUAACUUCAACC
ABVS01000001.1/545059-545148 GGUUGUAUUUUGAGUCUGUAACUGAAUCAAAAGUGAAUCAAAAGGUGAACAU-UGGAACUACAUUUUGUGUACUUGUGGAUAACUUUAACC
DQ088853.1/1297-1208         GGUUGUAUUUUGAGUCUGAAACUGAAUCAAAAGUGAAUCAAAACGUGAACAU-CCAAACUACAUAUUGGGGACUUGUGGAUAACGUUAACC
DQ088852.1/941-1030          GGUUGUAUUUUGAGUCUGAAAUUGAAUCAAAAGUGAAUCAAAACGUGAACAU-UGAAACUACAUUUUGAUACGUUGUGGAUAACUUUUACA
AACY024103422.1/358-269      GGUUGUAUUUUGAGUCCGUAAUUGAAUCAAAAGUGAAUCAAAACGUGAACAUCCAAA-CUACAUUUUGUAUGCUUGUGGAUAACUUCAACC
AACY023666470.1/1117-1028    GUUUGUAUUUUGAGUCCGUAAUUGAAUCAAAAGUGAAUCAAAACGUGAACAUCCAGA-CUACAUUUUGUAUGCUUGUGGAUAACUUCAACC
AACY022748921.1/521-436      U--UGUAUUUUGAGUCCGUAAUUGAAUCAAAAGUGAAUCAAAACGUGAACAU-CAAAACUACAUUUUGUAUGCUUGUGGAUAACUUCA--A
AACY020521394.1/1-86         U--UGUAUUUUGAGUCCGUAAUUGAAUCAAAAGUGAAUCAAAACAUGAACAU-CAAAACUACAUUUUGUAUGCUUGUGGAUAACUUCA--A
AACY020955001.1/242-159      ---UGUAUUUUGAGUCCGUAAUUGAAUCAAAAGUGAAUCAAAACGUGAACAU-CAAAACUACAUUUUGUAUGCUUGUGGAUAAGUUCA---
AACY021181531.1/341-252      GGUUGUAUUUUGAGUCUGUAACUGAAUCAAAAGUGAAUCAAAACGUGAACAU-CAAAACCACAUUUUGUAUGCUUGUGGAUAACUUCAACC
#=GC SS_cons                 (((((,,,<<<<<-<<------<<<-<<<____>>>->>>------>>--->.>>>>,<<<<<___________>>>>>,,,,,,,)))))
#=GC RF                      gguuGUAUuuuGaGuCuGuAAuuGaAuCaAAAGuGaAuCaAAAcGUGaACAu.CaaaACcaCaUUUUGuaugcUuGugGAUAAcUUCaacc
//
