INFERNAL1/a [1.1.5 | Sep 2023] NAME SAM_V ACC RF01826 DESC SAM-V (S-adenosyl methionine) riboswitch aptamer STATES 202 NODES 60 CLEN 66 W 84 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 15 14:23:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/OK_update/RF01826/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.491699 CKSUM 3425752106 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 50.50 NC 40.30 EFP7GF -9.4912 0.71897 ECMLC 0.52130 -9.91714 1.96407 1600000 587601 0.002042 ECMGC 0.41180 -15.62785 -1.32473 1600000 144560 0.002767 ECMLI 0.49500 -7.72177 3.57722 1600000 322256 0.003724 ECMGI 0.45890 -9.78173 1.81058 1600000 81733 0.004894 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 106 -7.162 -7.369 -0.180 -3.260 IL 1 1 2 1 4 1 23 88 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 87 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 24 85 106 -8.042 -0.020 -6.696 1.751 -2.529 -2.146 -2.087 D 4 2 3 5 3 0 16 82 104 -7.068 -2.581 -0.277 IL 5 5 3 5 3 1 22 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 23 83 105 -8.042 -0.020 -6.696 0.559 -0.883 -1.094 0.600 D 7 5 3 8 3 0 16 81 103 -7.068 -2.581 -0.277 IL 8 8 3 8 3 1 22 85 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 23 82 104 -8.042 -0.020 -6.696 -0.262 -0.975 -1.414 1.191 D 10 8 3 11 3 0 16 80 102 -7.068 -2.581 -0.277 IL 11 11 3 11 3 1 21 84 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 22 81 103 -8.042 -0.020 -6.696 0.572 -0.885 -1.092 0.587 D 13 11 3 14 3 0 15 79 101 -7.068 -2.581 -0.277 IL 14 14 3 14 3 1 21 83 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 21 80 102 -8.042 -0.020 -6.696 0.540 -0.853 -0.386 0.295 D 16 14 3 17 3 0 15 78 100 -7.068 -2.581 -0.277 IL 17 17 3 17 3 1 20 82 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 21 79 101 -8.042 -0.020 -6.696 0.596 -0.135 -0.400 -0.286 D 19 17 3 20 3 0 14 77 99 -7.068 -2.581 -0.277 IL 20 20 3 20 3 1 20 81 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 20 78 100 -8.042 -0.020 -6.696 -0.747 -1.568 1.235 -0.486 D 22 20 3 23 3 0 14 76 98 -7.068 -2.581 -0.277 IL 23 23 3 23 3 1 19 80 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - c - - - ML 24 23 3 26 3 1 19 77 99 -8.042 -0.020 -6.696 0.094 0.124 -0.006 -0.240 D 25 23 3 26 3 0 14 76 97 -7.068 -2.581 -0.277 IL 26 26 3 26 3 1 18 79 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 18 76 98 -8.042 -0.020 -6.696 -0.073 0.327 -1.181 0.437 D 28 26 3 29 3 0 13 75 97 -7.068 -0.669 -1.460 IL 29 29 3 29 3 1 17 78 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - a - - - ML 30 29 3 32 3 1 17 75 97 -8.164 -0.018 -6.818 0.941 -1.567 0.312 -0.998 D 31 29 3 32 3 0 12 74 96 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 16 77 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 17 74 96 -8.164 -0.018 -6.818 -2.001 -3.282 1.803 -2.669 D 34 32 3 35 3 0 11 73 95 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 16 76 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 16 73 95 -8.164 -0.018 -6.818 -2.001 -3.282 1.803 -2.669 D 37 35 3 38 3 0 10 71 93 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 15 75 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 15 72 94 -2.589 -0.278 -6.818 -1.013 1.010 -1.843 0.278 D 40 38 3 41 3 0 10 69 90 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 15 73 95 -1.220 -0.888 -5.043 0.000 0.000 0.000 0.000 [ MATL 14 ] 16 - A - - - ML 42 41 3 44 3 1 14 68 88 -8.164 -0.018 -6.818 1.793 -2.776 -2.368 -2.360 D 43 41 3 44 3 0 9 67 87 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 17 - u - - - ML 45 44 3 47 3 1 14 67 87 -8.164 -0.018 -6.818 -0.483 -1.013 0.179 0.728 D 46 44 3 47 3 0 8 66 86 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 18 - U - - - ML 48 47 3 50 3 1 13 66 86 -8.164 -0.018 -6.818 -1.862 -1.794 -2.613 1.711 D 49 47 3 50 3 0 8 65 85 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 19 - U - - - ML 51 50 3 53 3 1 12 65 85 -8.164 -0.018 -6.818 -1.862 -1.794 -2.613 1.711 D 52 50 3 53 3 0 7 64 83 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 20 - G - - - ML 54 53 3 56 3 1 11 64 84 -8.164 -0.018 -6.818 -2.001 -3.282 1.803 -2.669 D 55 53 3 56 3 0 6 63 82 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 10 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 21 - A - - - ML 57 56 3 59 3 1 10 63 82 -8.164 -0.018 -6.818 1.793 -2.776 -2.368 -2.360 D 58 56 3 59 3 0 5 62 81 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 10 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 22 - A - - - ML 60 59 3 62 3 1 9 62 81 -8.164 -0.018 -6.818 1.793 -2.776 -2.368 -2.360 D 61 59 3 62 3 0 5 61 80 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 9 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 23 - C - - - ML 63 62 3 65 3 1 9 61 80 -8.164 -0.018 -6.818 -2.232 1.733 -3.063 -1.548 D 64 62 3 65 3 0 4 60 79 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 8 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 24 - u - - - ML 66 65 3 68 3 1 8 60 79 -8.164 -0.018 -6.818 -0.882 0.301 -1.665 0.934 D 67 65 3 68 3 0 3 59 78 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - G - - - ML 69 68 3 71 3 1 7 59 78 -8.164 -0.018 -6.818 0.118 -1.821 1.143 -1.240 D 70 68 3 71 3 0 3 58 77 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 7 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - U - - - ML 72 71 3 74 3 1 6 58 77 -8.164 -0.018 -6.818 -1.862 -1.794 -2.613 1.711 D 73 71 3 74 3 0 2 57 76 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 6 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - A - - - ML 75 74 3 77 3 1 5 57 76 -8.542 -0.132 -3.559 1.793 -2.776 -2.368 -2.360 D 76 74 3 77 3 0 2 56 75 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 5 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 69 - A - - MR 78 77 3 80 3 1 6 56 75 -8.428 -0.018 -6.745 1.282 -1.312 -1.320 -0.385 D 79 77 3 80 3 0 1 54 73 -7.175 -2.353 -0.327 IR 80 80 3 80 3 1 5 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 68 - A - - MR 81 80 3 83 3 1 6 55 74 -8.428 -0.018 -6.745 1.751 -2.529 -2.146 -2.087 D 82 80 3 83 3 0 1 53 72 -7.175 -2.353 -0.327 IR 83 83 3 83 3 1 5 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 67 - u - - MR 84 83 3 86 3 1 5 54 73 -8.428 -0.018 -6.745 0.505 -0.876 -1.102 0.651 D 85 83 3 86 3 0 1 52 71 -7.175 -2.353 -0.327 IR 86 86 3 86 3 1 4 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 66 - G - - MR 87 86 3 89 3 1 4 53 72 -8.428 -0.018 -6.745 -1.747 -2.992 1.759 -2.379 D 88 86 3 89 3 0 1 51 70 -7.175 -2.353 -0.327 IR 89 89 3 89 3 1 3 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 65 - A - - MR 90 89 3 92 3 1 3 52 71 -8.428 -0.158 -3.313 1.751 -2.529 -2.146 -2.087 D 91 89 3 92 3 0 1 50 69 -7.175 -2.353 -0.327 IR 92 92 3 92 3 1 4 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 64 - G - - MR 93 92 3 95 3 1 4 51 70 -8.289 -0.020 -6.607 -1.431 -2.627 1.687 -2.013 D 94 92 3 95 3 0 1 49 69 -7.725 -1.251 -0.798 IR 95 95 3 95 3 1 3 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 63 - G - - MR 96 95 3 98 3 1 4 50 69 -8.415 -0.018 -6.733 -0.274 -1.922 1.329 -1.334 D 97 95 3 98 3 0 0 49 68 -7.238 -0.662 -1.468 IR 98 98 3 98 3 1 2 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 62 - A - - MR 99 98 3 101 3 1 3 49 68 -8.542 -0.016 -6.860 1.793 -2.776 -2.368 -2.360 D 100 98 3 101 3 0 0 47 66 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 2 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 61 - A - - MR 102 101 3 104 3 1 3 48 67 -2.615 -0.272 -6.860 1.793 -2.776 -2.368 -2.360 D 103 101 3 104 3 0 0 46 65 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 2 48 67 -2.601 -0.322 -4.839 0.000 0.000 0.000 0.000 [ MATR 35 ] - 59 - A - - MR 105 104 3 107 5 1 2 46 66 -7.269 -0.035 -7.084 -7.297 -8.188 1.793 -2.776 -2.368 -2.360 D 106 104 3 107 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 107 107 3 107 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 28 58 U A - - MP 108 107 3 112 6 2 3 45 65 -9.193 -9.132 -0.020 -7.909 -8.188 -8.583 -4.679 -4.513 -4.461 -0.776 -3.305 -4.979 1.031 -4.032 -4.462 -0.585 -4.811 -2.396 3.519 -4.809 -0.969 -3.231 ML 109 107 3 112 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 29 57 U A - - MP 114 113 6 118 4 2 2 43 63 -7.062 -8.307 -0.070 -4.761 -4.679 -4.513 -4.461 -0.776 -3.305 -4.979 1.031 -4.032 -4.462 -0.585 -4.811 -2.396 3.519 -4.809 -0.969 -3.231 ML 115 113 6 118 4 1 1 43 62 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 42 62 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 41 60 -12.737 -14.007 -2.036 -0.404 IL 118 118 5 118 4 1 1 43 62 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 56 - U - - MR 120 119 6 122 5 1 1 41 61 -7.269 -0.035 -7.084 -7.297 -8.188 -1.862 -1.794 -2.613 1.711 D 121 119 6 122 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 30 55 G C - - MP 123 122 3 127 6 2 2 40 60 -9.193 -9.132 -0.020 -7.909 -8.188 -8.583 -5.135 -3.283 -5.281 -0.068 -5.783 -4.843 -1.050 -5.544 -4.575 3.720 -4.885 -1.000 -1.425 -4.722 -3.110 -4.152 ML 124 122 3 127 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 31 54 U A - - MP 129 128 6 133 6 2 2 38 58 -9.193 -9.132 -0.020 -7.909 -8.188 -8.583 -4.679 -4.513 -4.461 -0.776 -3.305 -4.979 1.031 -4.032 -4.462 -0.585 -4.811 -2.396 3.519 -4.809 -0.969 -3.231 ML 130 128 6 133 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 32 53 G C - - MP 135 134 6 139 6 2 2 36 56 -9.193 -9.132 -0.020 -7.909 -8.188 -8.583 -3.997 -2.727 -3.999 1.620 -4.649 -4.585 -0.060 -4.362 -3.956 3.239 -4.353 -0.349 -0.359 -3.977 -2.049 -2.895 ML 136 134 6 139 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 33 52 C G - - MP 141 140 6 145 4 2 2 34 54 -7.162 -7.369 -0.046 -5.783 -4.990 -4.933 -4.603 -1.131 -3.232 -4.957 3.667 -4.086 -4.671 -0.945 -4.881 -2.889 0.234 -5.029 -0.952 -3.497 ML 142 140 6 145 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 36 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 34 - G - - - ML 147 146 6 149 3 1 1 32 51 -8.164 -0.018 -6.818 0.191 -1.783 1.093 -1.201 D 148 146 6 149 3 0 0 31 50 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 35 - C - - - ML 150 149 3 152 3 1 1 31 50 -8.164 -0.018 -6.818 -2.232 1.733 -3.063 -1.548 D 151 149 3 152 3 0 0 30 49 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 36 - C - - - ML 153 152 3 155 3 1 1 30 49 -8.164 -0.018 -6.818 -2.232 1.733 -3.063 -1.548 D 154 152 3 155 3 0 0 29 48 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 37 - u - - - ML 156 155 3 158 3 1 1 29 47 -8.164 -0.018 -6.818 -0.882 0.301 -1.665 0.934 D 157 155 3 158 3 0 0 27 46 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 38 - U - - - ML 159 158 3 161 3 1 1 27 46 -8.542 -0.016 -6.860 -0.413 -1.101 -1.583 1.292 D 160 158 3 161 3 0 0 26 45 -5.620 -0.734 -1.403 IL 161 161 3 161 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 51 - A - - MR 162 161 3 164 3 1 1 26 45 -8.542 -0.016 -6.860 1.793 -2.776 -2.368 -2.360 D 163 161 3 164 3 0 0 25 44 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 50 - A - - MR 165 164 3 167 3 1 1 25 44 -8.542 -0.016 -6.860 1.793 -2.776 -2.368 -2.360 D 166 164 3 167 3 0 0 24 43 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 49 - A - - MR 168 167 3 170 3 1 1 24 43 -8.542 -0.016 -6.860 1.084 -1.154 -1.245 0.012 D 169 167 3 170 3 0 0 23 42 -6.390 -1.568 -0.620 IR 170 170 3 170 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 48 - U - - MR 171 170 3 173 5 1 1 23 42 -7.269 -0.035 -7.084 -7.297 -8.188 0.046 -0.979 -1.334 1.045 D 172 170 3 173 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 173 173 3 173 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 39 47 G C - - MP 174 173 3 178 6 2 2 22 41 -9.193 -9.132 -0.020 -7.909 -8.188 -8.583 -4.320 -2.890 -4.343 1.125 -5.020 -4.672 -0.362 -4.705 -4.162 3.450 -4.530 -0.534 -0.668 -4.195 -2.373 -3.232 ML 175 173 3 178 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 3 178 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 3 178 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 40 46 C G - - MP 180 179 6 184 4 2 2 20 39 -7.162 -7.369 -0.046 -5.783 -4.990 -4.933 -4.603 -1.131 -3.232 -4.957 3.667 -4.086 -4.671 -0.945 -4.881 -2.889 0.234 -5.029 -0.952 -3.497 ML 181 179 6 184 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 6 184 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 184 184 5 184 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 41 - A - - - ML 186 185 6 188 3 1 1 17 36 -8.164 -0.018 -6.818 1.793 -2.776 -2.368 -2.360 D 187 185 6 188 3 0 0 17 35 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 42 - U - - - ML 189 188 3 191 3 1 1 16 35 -8.164 -0.018 -6.818 -1.862 -1.794 -2.613 1.711 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 43 - a - - - ML 192 191 3 194 3 1 1 15 33 -8.164 -0.403 -2.057 0.791 -0.994 -1.155 0.399 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 44 - A - - - ML 195 194 3 197 3 1 1 13 32 -7.784 -0.023 -6.438 1.065 -1.283 -0.168 -0.721 D 196 194 3 197 3 0 0 12 30 -7.964 -0.321 -2.356 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 45 - a - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 0.791 -0.994 -1.155 0.399 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SAM_V ACC RF01826 DESC SAM-V (S-adenosyl methionine) riboswitch aptamer LENG 66 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 15 14:23:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/OK_update/RF01826/CM NSEQ 7 EFFN 2.936035 CKSUM 3425752106 STATS LOCAL MSV -8.5029 0.71897 STATS LOCAL VITERBI -8.8817 0.71897 STATS LOCAL FORWARD -3.5770 0.71897 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.08318 1.68196 1.47353 1.40096 1.38629 1.38629 1.38629 1.38629 0.13051 4.06851 2.25143 1.46634 0.26236 0.00000 * 1 0.14132 3.32445 3.04024 3.03714 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 2 0.98438 2.04461 2.19245 0.95385 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 3 1.60263 2.13287 2.44807 0.52142 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 4 0.97438 2.04591 2.19127 0.96355 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 5 1.00022 2.01256 1.65696 1.17819 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 6 0.95904 1.46648 1.66764 1.62297 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 7 1.99690 2.57446 0.48102 1.77258 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 8 1.33447 1.27757 1.36997 1.59025 8 c - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 9 1.45410 1.12919 2.25619 1.08369 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 0.28141 1.40534 10 0.70706 2.57228 1.14614 2.18317 10 a - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 11 2.96998 3.88195 0.10926 3.45491 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 12 2.96998 3.88195 0.10926 3.45491 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 13 2.19042 0.64183 2.77892 1.20498 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.23771 1.63751 4.06851 0.75500 0.63490 1.09861 0.40547 14 0.11626 3.50674 3.20540 3.23850 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 15 1.77800 2.14807 1.23869 0.85672 17 u - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 16 2.86379 2.78529 3.39019 0.16542 18 U - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 17 2.86379 2.78529 3.39019 0.16542 19 U - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 18 2.96998 3.88195 0.10926 3.45491 20 G - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 19 0.11626 3.50674 3.20540 3.23850 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 20 0.11626 3.50674 3.20540 3.23850 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 21 3.16961 0.14650 3.74241 2.65136 23 C - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 22 2.08612 1.15333 2.63704 0.71606 24 u - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 23 1.31772 2.75752 0.55402 2.36268 25 G - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 24 2.86379 2.78529 3.39019 0.16542 26 U - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 25 0.11626 3.50674 3.20540 3.23850 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 26 3.27264 2.14301 3.06295 0.22559 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 27 3.27977 2.14361 3.06645 0.22496 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 28 2.74517 3.48924 0.13635 3.42039 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 29 3.27287 2.14303 3.06307 0.22557 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 30 1.54578 2.78253 0.42378 2.65353 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 31 3.46650 0.18246 3.27699 2.32472 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 32 1.26238 2.72899 0.58923 2.33326 34 G - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 33 3.16961 0.14650 3.74241 2.65136 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 34 3.16961 0.14650 3.74241 2.65136 36 C - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 35 2.08612 1.15333 2.63704 0.71606 37 u - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 36 1.71628 2.23384 2.58039 0.45035 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 37 1.89814 3.00137 0.29521 2.88135 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 38 3.47609 0.18167 3.28191 2.32649 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 39 0.11626 3.50674 3.20540 3.23850 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 40 2.86379 2.78529 3.39019 0.16542 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 41 0.81473 2.12905 2.24238 1.10236 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.33773 4.06851 1.31117 1.46634 0.26236 1.09861 0.40547 42 0.61816 2.34159 1.49889 1.95535 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04683 3.77762 3.77762 1.46634 0.26236 0.11949 2.18368 43 0.81473 2.12905 2.24238 1.10236 45 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 44 2.61041 3.45437 0.15562 3.24415 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 45 3.12144 0.33857 2.82667 1.69333 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 46 1.36435 2.13086 2.38132 0.62869 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 47 0.60453 2.24861 2.31644 1.38831 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 48 0.11626 3.50674 3.20540 3.23850 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 49 0.11626 3.50674 3.20540 3.23850 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 50 2.60475 3.44594 0.15686 3.23442 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 51 2.89218 0.48282 2.59927 1.37366 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 52 0.25428 3.26000 1.98085 3.03266 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 53 3.64365 0.15902 3.35248 2.45496 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 54 2.86379 2.78529 3.39019 0.16542 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 55 0.25401 3.26185 1.98112 3.03476 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 56 0.25361 3.26458 1.98152 3.03788 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 57 0.11626 3.50674 3.20540 3.23850 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.24830 1.59568 4.06851 0.16091 1.90627 1.09861 0.40547 58 0.11626 3.50674 3.20540 3.23850 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.03480 4.06851 4.06851 1.46634 0.26236 1.09861 0.40547 59 0.11626 3.50674 3.20540 3.23850 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.14125 4.06851 2.16609 1.46634 0.26236 1.09861 0.40547 60 1.61944 2.83415 0.42227 2.43422 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.14569 3.96590 2.14882 1.46634 0.26236 2.16356 0.12207 61 2.55535 3.41238 0.17558 2.98767 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.04291 3.86312 3.86312 1.46634 0.26236 0.72629 0.66106 62 0.14132 3.32445 3.04024 3.03714 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 63 2.78742 3.67695 0.13418 3.25214 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 64 1.02382 2.04075 2.19848 0.91660 67 u - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 65 0.14132 3.32445 3.04024 3.03714 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.03823 3.97623 3.97623 1.46634 0.26236 2.09849 0.13084 66 0.46396 2.36629 2.37907 1.68877 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.01930 3.95730 * 1.46634 0.26236 0.00000 * //