# STOCKHOLM 1.0
#=GF ID rspL
#=GF AC RF01823
#=GF DE rpsL sRNA
#=GF AU Moore B; 0000-0002-4074-1933
#=GF GA 37.0
#=GF NC 36.9
#=GF TC 37.0
#=GF SE Published; PMID:19531245
#=GF SS Published; PMID:19531245
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 31.68 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 19531245
#=GF RT Identification of candidate structured RNAs in the marine organism
#=GF RT 'Candidatus Pelagibacter ubique'.
#=GF RA Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ,
#=GF RA Breaker RR
#=GF RL BMC Genomics. 2009;10:268.
#=GF WK Pelagibacter_ubique
#=GF SQ 6

AACY022375643.1/586-670      UUGGCGAUAAUUUUUGGUUGGAAUGUAGUG-C-----AUUA--GCACUAAACGCUGCCACAA-AUAACAUGUCAGUUAUU-U-CA-UC-AAAAAUAAA
AACY020349958.1/529-446      UUGGCGAUAAUUUUUGGUUGGAAUGUAGUG-C-----AUUA--GCACUAAACGCUGCCACAA-AUAACAUGUCAGUUAUU-U-CA-UC-AAAAAUAA-
AACY020879984.1/571-654      UUGGCGAUA-UUUUUGGUUGGAAUGUAGUGAU-----AUU---ACACUAAACGCUGCCACAA-AUAACCUGUCAGUUAUU-U-CA-UC-AAAAAUAUA
ABNY01009418.1/8-97          UUGGCGAUGUUUUUGGUUUGGAAUGUAGUG-UUA-GCUUUA-GACACUAAACGCUGCCAUAA-AUAACCUGUCAGUUAUU-U-CU-CU-CAAAAACAA
ABVS01000001.1/844565-844656 UUGGCGAUA-UUUUUGGUUGGAAUGUAGUA-CCUGCUAAUA--GUACUAAACGCUGCCACAAAAUAACCUGUCAGUUAUUUU-CA-CCUAAAAAUAAA
CP000084.1/1074301-1074209   UUGACGCUG-UUUUUGGUUGGAAUGUAGUA-CCU-ACUUUACGGAACUAAACGCUGCCACAAAAUAACCUGUCAGUUAUU-UUCACUC-AAAAAUAUA
#=GC SS_cons                 :::::::::::((((((--((((((<<<<<.<__.______..>>>>>>,,,<<<<______._________>>>>)))).).)-.)).)))):::::
#=GC RF                      UUGGCGAUaaUuuuuGgUUGgaauguaGug.cuu.acaUUA..gcaCuaAACgCuGCCAcAA.AUAACcUGUCaGuuauu.u.CA.cC.aaaaAuAaA
//
