INFERNAL1/a [1.1.5 | Sep 2023] NAME RsaB ACC RF01817 DESC RNA Staph. aureus A STATES 194 NODES 55 CLEN 60 W 76 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 23:51:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01817/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.847656 CKSUM 3600495054 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 86.30 NC 41.20 EFP7GF -4.7640 0.72787 ECMLC 0.53179 -8.80649 3.11803 1600000 681074 0.001762 ECMGC 0.40045 -12.70091 1.12333 1600000 101450 0.003943 ECMLI 0.47322 -8.52005 4.39674 1600000 541783 0.002215 ECMGI 0.43251 -8.27312 3.89369 1600000 77164 0.005184 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 76 96 -6.914 -7.121 -0.054 -5.535 IL 1 1 2 1 4 1 22 80 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 2 22 76 96 -7.933 -0.021 -6.587 0.548 -0.831 -1.037 0.574 D 4 2 3 5 3 0 18 75 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 21 75 95 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 7 5 3 8 3 0 17 74 94 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 20 74 94 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 10 8 3 11 3 0 16 73 93 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 20 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 19 73 93 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 13 11 3 14 3 0 16 72 92 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 19 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 18 72 92 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 16 14 3 17 3 0 15 71 91 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 17 71 91 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 19 17 3 20 3 0 15 70 90 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 17 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 16 70 90 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 22 20 3 23 3 0 14 69 89 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 16 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 2 1 15 69 89 -8.319 -0.005 1.705 -2.308 -1.947 -1.845 D 25 23 3 26 2 0 14 68 88 -8.445 -0.004 IL 26 26 3 26 2 1 15 70 90 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 27 26 3 88 28 0 14 68 88 [ BEGR 39 ] - - - - - - S 28 27 1 29 3 0 0 33 52 -7.933 -0.021 -6.587 IL 29 29 2 29 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - C - - - ML 30 29 2 32 3 1 1 33 52 -7.933 -0.021 -6.587 -1.665 1.603 -2.486 -1.094 D 31 29 2 32 3 0 0 32 51 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - - - ML 33 32 3 35 3 1 1 32 51 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 34 32 3 35 3 0 0 31 50 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - A - - - ML 36 35 3 38 3 1 1 31 50 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 37 35 3 38 3 0 0 30 49 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - C - - - ML 39 38 3 41 3 1 1 30 49 -7.933 -0.021 -6.587 -1.665 1.603 -2.486 -1.094 D 40 38 3 41 3 0 0 29 48 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - C - - - ML 42 41 3 44 3 1 1 29 48 -7.933 -0.021 -6.587 -1.665 1.603 -2.486 -1.094 D 43 41 3 44 3 0 0 28 47 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - U - - - ML 45 44 3 47 5 1 1 28 46 -7.066 -0.040 -6.881 -7.094 -7.985 -1.428 -1.434 -2.158 1.601 D 46 44 3 47 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 47 47 3 47 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 48 60 A U - - MP 48 47 3 52 6 2 2 27 45 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -3.742 -2.786 -3.765 3.299 -4.078 -5.136 0.218 -3.810 -3.658 1.131 -4.203 -0.271 -0.199 -4.332 -1.723 -2.601 ML 49 47 3 52 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 49 59 U A - - MP 54 53 6 58 6 2 2 25 43 -9.095 -9.034 -0.177 -3.245 -8.090 -8.485 -4.128 -3.951 -3.973 -0.250 -2.928 -4.543 1.399 -3.620 -3.978 0.013 -4.355 -1.852 3.298 -4.282 -0.606 -2.809 ML 55 53 6 58 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 50 58 u a - - MP 60 59 6 64 6 2 2 23 41 -8.941 -8.880 -0.024 -7.657 -7.937 -8.332 -3.434 -3.202 -3.345 0.436 -2.472 -3.970 1.832 -3.104 -3.362 0.863 -3.767 -1.113 2.763 -3.603 -0.167 -2.247 ML 61 59 6 64 6 1 1 21 40 -7.471 -7.817 -2.531 -0.350 -7.667 -5.196 -0.720 -0.866 -1.399 1.302 MR 62 59 6 64 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 51 57 u a - - MP 66 65 6 70 6 2 2 21 39 -8.941 -8.880 -0.024 -7.657 -7.937 -8.332 -3.434 -3.202 -3.345 0.436 -2.472 -3.970 1.832 -3.104 -3.362 0.863 -3.767 -1.113 2.763 -3.603 -0.167 -2.247 ML 67 65 6 70 6 1 1 20 39 -7.471 -7.817 -2.531 -0.350 -7.667 -5.196 -0.720 -0.866 -1.399 1.302 MR 68 65 6 70 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 52 56 u a - - MP 72 71 6 76 4 2 2 19 37 -6.463 -6.670 -0.075 -5.084 -3.434 -3.202 -3.345 0.436 -2.472 -3.970 1.832 -3.104 -3.362 0.863 -3.767 -1.113 2.763 -3.603 -0.167 -2.247 ML 73 71 6 76 4 1 1 19 38 -4.752 -4.934 -0.232 -3.664 -0.720 -0.866 -1.399 1.302 MR 74 71 6 76 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - A - - - ML 78 77 6 80 3 1 1 15 33 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 79 77 6 80 3 0 0 15 33 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - U - - - ML 81 80 3 83 3 1 1 13 32 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 82 80 3 83 3 0 0 13 32 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - U - - - ML 84 83 3 86 2 1 1 1 1 * 0.000 -1.428 -1.434 -2.158 1.601 D 85 83 3 86 2 0 0 0 0 * 0.000 IL 86 86 3 86 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 87 86 3 -1 0 0 0 0 0 [ BEGL 10 ] - - - - - - S 88 27 1 89 1 0 1 48 67 0.000 [ BIF 11 ] - - - - - - B 89 88 1 90 140 0 1 48 67 [ BEGL 12 ] - - - - - - S 90 89 1 91 4 0 0 30 48 -0.045 -6.816 -6.224 -6.864 [ MATP 13 ] 9 24 G C - - MP 91 90 1 95 6 2 2 30 48 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -4.684 -3.066 -4.778 0.238 -5.151 -4.671 -0.530 -5.017 -4.290 3.624 -4.631 -0.763 -0.917 -4.430 -2.564 -3.656 ML 92 90 1 95 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 93 90 1 95 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 94 90 1 95 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 95 95 5 95 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 96 96 6 96 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 23 u g - - MP 97 96 6 101 6 2 2 28 46 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -4.028 -3.947 -3.745 -0.287 -2.522 -4.180 1.763 -3.289 -3.785 -0.083 -4.083 -1.949 0.923 -4.120 2.965 -2.659 ML 98 96 6 101 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 99 96 6 101 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 100 96 6 101 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 101 101 5 101 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 102 102 6 102 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 22 G C - - MP 103 102 6 107 6 2 2 26 44 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -4.684 -3.066 -4.778 0.238 -5.151 -4.671 -0.530 -5.017 -4.290 3.624 -4.631 -0.763 -0.917 -4.430 -2.564 -3.656 ML 104 102 6 107 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 105 102 6 107 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 106 102 6 107 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 107 107 5 107 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 108 108 6 108 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 21 u g - - MP 109 108 6 113 6 2 2 24 42 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -4.028 -3.947 -3.745 -0.287 -2.522 -4.180 1.763 -3.289 -3.785 -0.083 -4.083 -1.949 0.923 -4.120 2.965 -2.659 ML 110 108 6 113 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 111 108 6 113 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 112 108 6 113 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 113 113 5 113 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 114 114 6 114 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 20 U A - - MP 115 114 6 119 6 2 2 22 40 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -4.128 -3.951 -3.973 -0.250 -2.928 -4.543 1.399 -3.620 -3.978 0.013 -4.355 -1.852 3.298 -4.282 -0.606 -2.809 ML 116 114 6 119 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 117 114 6 119 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 118 114 6 119 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 119 119 5 119 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 120 120 6 120 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 19 A U - - MP 121 120 6 125 4 2 2 20 38 -6.914 -7.121 -0.054 -5.535 -3.742 -2.786 -3.765 3.299 -4.078 -5.136 0.218 -3.810 -3.658 1.131 -4.203 -0.271 -0.199 -4.332 -1.723 -2.601 ML 122 120 6 125 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 123 120 6 125 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 124 120 6 125 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 125 125 5 125 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 126 126 6 126 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 127 126 6 129 3 1 1 16 35 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 128 126 6 129 3 0 0 16 34 -6.174 -1.687 -0.566 IL 129 129 3 129 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - U - - - ML 130 129 3 132 3 1 1 15 33 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 131 129 3 132 3 0 0 15 33 -6.174 -1.687 -0.566 IL 132 132 3 132 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 133 132 3 135 3 1 1 13 32 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 134 132 3 135 3 0 0 13 32 -6.174 -1.687 -0.566 IL 135 135 3 135 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - G - - - ML 136 135 3 138 2 1 1 1 1 * 0.000 -1.513 -2.723 1.708 -2.109 D 137 135 3 138 2 0 0 0 0 * 0.000 IL 138 138 3 138 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 23 ] - - - - - - E 139 138 3 -1 0 0 0 0 0 [ BEGR 24 ] - - - - - - S 140 89 1 141 3 0 0 31 50 -7.933 -0.021 -6.587 IL 141 141 2 141 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - A - - - ML 142 141 2 144 3 1 1 31 50 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 143 141 2 144 3 0 0 30 49 -6.174 -1.687 -0.566 IL 144 144 3 144 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 145 144 3 147 3 1 1 30 49 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 146 144 3 147 3 0 0 29 48 -6.174 -1.687 -0.566 IL 147 147 3 147 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 148 147 3 150 3 1 1 29 48 -7.933 -0.021 -6.587 -1.665 1.603 -2.486 -1.094 D 149 147 3 150 3 0 0 28 47 -6.174 -1.687 -0.566 IL 150 150 3 150 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 151 150 3 153 5 1 1 28 47 -7.066 -0.040 -6.881 -7.094 -7.985 -1.665 1.603 -2.486 -1.094 D 152 150 3 153 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 153 153 3 153 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 29 41 C G - - MP 154 153 3 158 6 2 2 27 46 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -4.490 -4.391 -4.190 -0.628 -2.921 -4.610 3.532 -3.725 -4.237 -0.380 -4.505 -2.337 0.599 -4.563 -0.626 -3.079 ML 155 153 3 158 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 156 153 3 158 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 3 158 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 158 158 5 158 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 40 A U - - MP 160 159 6 164 6 2 2 25 44 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -3.742 -2.786 -3.765 3.299 -4.078 -5.136 0.218 -3.810 -3.658 1.131 -4.203 -0.271 -0.199 -4.332 -1.723 -2.601 ML 161 159 6 164 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 162 159 6 164 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 163 159 6 164 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 164 164 5 164 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 165 165 6 165 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 39 A U - - MP 166 165 6 170 6 2 2 23 42 -9.095 -9.034 -0.021 -7.810 -8.090 -8.485 -3.742 -2.786 -3.765 3.299 -4.078 -5.136 0.218 -3.810 -3.658 1.131 -4.203 -0.271 -0.199 -4.332 -1.723 -2.601 ML 167 165 6 170 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 168 165 6 170 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 169 165 6 170 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 170 170 5 170 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 171 171 6 171 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 38 U A - - MP 172 171 6 176 4 2 2 21 40 -6.914 -7.121 -0.054 -5.535 -4.128 -3.951 -3.973 -0.250 -2.928 -4.543 1.399 -3.620 -3.978 0.013 -4.355 -1.852 3.298 -4.282 -0.606 -2.809 ML 173 171 6 176 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 174 171 6 176 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 175 171 6 176 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 176 176 5 176 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 177 177 6 177 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - U - - - ML 178 177 6 180 3 1 1 18 36 -7.933 -0.021 -6.587 -1.428 -1.434 -2.158 1.601 D 179 177 6 180 3 0 0 17 36 -6.174 -1.687 -0.566 IL 180 180 3 180 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 181 180 3 183 3 1 1 16 35 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 182 180 3 183 3 0 0 16 34 -6.174 -1.687 -0.566 IL 183 183 3 183 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 184 183 3 186 3 1 1 15 33 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 185 183 3 186 3 0 0 15 33 -6.174 -1.687 -0.566 IL 186 186 3 186 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 187 186 3 189 3 1 1 13 32 -7.933 -0.021 -6.587 1.705 -2.308 -1.947 -1.845 D 188 186 3 189 3 0 0 13 32 -6.174 -1.687 -0.566 IL 189 189 3 189 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 190 189 3 192 2 1 1 1 1 * 0.000 -1.428 -1.434 -2.158 1.601 D 191 189 3 192 2 0 0 0 0 * 0.000 IL 192 192 3 192 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 193 192 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RsaB ACC RF01817 DESC RNA Staph. aureus A LENG 60 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 23:51:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01817/CM NSEQ 2 EFFN 1.753906 CKSUM 3600495054 STATS LOCAL MSV -8.2891 0.72787 STATS LOCAL VITERBI -9.2309 0.72787 STATS LOCAL FORWARD -2.7403 0.72787 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21377 1.61329 1.73131 1.11889 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 1.01033 1.95067 2.09173 0.99358 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.21656 2.93483 2.68930 2.60852 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.32930 2.34219 2.83314 0.29076 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.32930 2.34219 2.83314 0.29076 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.21656 2.93483 2.68930 2.60852 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.32930 2.34219 2.83314 0.29076 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.32930 2.34219 2.83314 0.29076 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.21656 2.93483 2.68930 2.60852 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.39745 2.92640 0.22437 2.87455 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.66630 1.43692 2.41436 0.50516 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.39422 2.92314 0.22529 2.86983 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.66321 1.43709 2.41313 0.50564 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.65391 1.67510 2.36440 0.43336 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.49024 2.42318 1.58359 2.36825 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.21656 2.93483 2.68930 2.60852 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.32930 2.34219 2.83314 0.29076 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.32930 2.34219 2.83314 0.29076 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.38057 3.21001 0.21644 2.78437 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.59793 1.84358 2.23801 0.41453 19 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.49339 2.54186 1.51180 2.40555 20 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.93792 2.58419 0.36990 2.41089 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 3.07857 0.26511 2.75002 2.09613 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.93668 2.58267 0.37058 2.40893 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 3.06524 0.26679 2.74462 2.09352 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.21656 2.93483 2.68930 2.60852 25 A - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.32930 2.34219 2.83314 0.29076 26 U - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.47899 0.29346 3.04592 2.09604 27 C - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.47899 0.29346 3.04592 2.09604 28 C - - , 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.89727 0.32727 2.63000 1.88481 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.48997 2.42385 1.58363 2.36932 30 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.49003 2.42370 1.58362 2.36909 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.65423 1.67511 2.36452 0.43330 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.32930 2.34219 2.83314 0.29076 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.21656 2.93483 2.68930 2.60852 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.21656 2.93483 2.68930 2.60852 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.21656 2.93483 2.68930 2.60852 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.32930 2.34219 2.83314 0.29076 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.49329 2.54218 1.51179 2.40599 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.59863 1.84363 2.23824 0.41440 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.59771 1.84357 2.23794 0.41457 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.15670 2.79312 0.28461 2.64850 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.47899 0.29346 3.04592 2.09604 42 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.21656 2.93483 2.68930 2.60852 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.21656 2.93483 2.68930 2.60852 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.47899 0.29346 3.04592 2.09604 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.47899 0.29346 3.04592 2.09604 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.32930 2.34219 2.83314 0.29076 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 0.49006 2.42362 1.58361 2.36896 48 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.65478 1.67511 2.36472 0.43321 49 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.19877 1.44154 1.88900 0.69060 50 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.20682 1.43350 1.88201 0.69476 51 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.21305 1.42735 1.87667 0.69798 52 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.21656 2.93483 2.68930 2.60852 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.32930 2.34219 2.83314 0.29076 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.32930 2.34219 2.83314 0.29076 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.32838 3.73767 1.36220 1.46634 0.26236 1.09861 0.40547 56 0.83080 2.00860 1.23227 1.97693 56 a - - > 1.38629 1.38629 1.38629 1.38629 0.06403 3.47333 3.47333 1.46634 0.26236 2.54601 0.08164 57 0.83074 2.00870 1.23221 1.97714 57 a - - > 1.38629 1.38629 1.38629 1.38629 0.06403 3.47333 3.47333 1.46634 0.26236 2.54601 0.08164 58 0.83070 2.00877 1.23217 1.97728 58 a - - > 1.38629 1.38629 1.38629 1.38629 0.06403 3.47333 3.47333 1.46634 0.26236 0.17054 1.85286 59 0.49362 2.54118 1.51180 2.40462 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.59325 1.84329 2.23653 0.41537 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //