INFERNAL1/a [1.1.5 | Sep 2023] NAME rdlD ACC RF01813 DESC rdlD antitoxin STATES 202 NODES 51 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 16:27:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01813/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 52 EFFN 2.593018 CKSUM 836814090 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 52.20 NC 48.70 EFP7GF -9.3980 0.71917 ECMLC 0.58913 -7.85554 2.33700 1600000 486402 0.002467 ECMGC 0.48262 -14.45862 -2.84896 1600000 108502 0.003687 ECMLI 0.60430 -5.47399 3.52187 1600000 275480 0.004356 ECMGI 0.54247 -9.37562 0.31391 1600000 76708 0.005215 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -7.197 -7.404 -0.045 -5.818 IL 1 1 2 1 4 1 18 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 17 82 102 -8.197 -0.018 -6.851 -1.022 -1.903 1.413 -0.794 D 4 2 3 5 3 0 13 81 100 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 16 81 101 -8.197 -0.018 -6.851 -1.165 -1.284 -1.606 1.493 D 7 5 3 8 3 0 12 79 99 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 16 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 16 80 100 -8.197 -0.018 -6.851 -0.520 0.633 -1.312 0.433 D 10 8 3 11 3 0 11 78 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 15 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 15 79 99 -8.197 -0.018 -6.851 -0.692 -0.659 -1.131 1.196 D 13 11 3 14 3 0 11 77 97 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 15 14 3 17 3 1 14 78 97 -8.197 -0.018 -6.851 0.582 -1.654 0.774 -1.073 D 16 14 3 17 3 0 10 76 96 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 14 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 13 77 96 -8.197 -0.018 -6.851 -2.070 -3.359 1.814 -2.746 D 19 17 3 20 3 0 9 75 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - g - - - ML 21 20 3 23 3 1 12 76 95 -8.197 -0.018 -6.851 0.017 -0.995 0.371 0.255 D 22 20 3 23 3 0 9 74 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 12 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 11 75 94 -8.197 -0.129 -3.609 -0.425 -0.989 -0.806 1.124 D 25 23 3 26 3 0 8 73 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 11 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 10 74 93 -8.087 -0.019 -6.741 -0.872 -1.090 -1.162 1.343 D 28 26 3 29 3 0 7 72 92 -7.019 -0.698 -1.411 IL 29 29 3 29 3 1 10 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 9 73 92 -8.197 -0.018 -6.851 -1.915 1.634 -2.755 -1.049 D 31 29 3 32 3 0 6 71 91 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 9 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 8 72 91 -8.197 -0.018 -6.851 1.607 -2.136 -1.266 -1.690 D 34 32 3 35 3 0 5 70 90 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 8 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 7 71 90 -8.197 -0.018 -6.851 1.803 -2.844 -2.429 -2.434 D 37 35 3 38 3 0 4 69 89 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 8 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 7 69 89 -8.197 -0.173 -3.193 -2.070 -3.359 1.814 -2.746 D 40 38 3 41 3 0 4 68 88 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 7 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 6 69 88 -8.044 -0.019 -6.698 1.398 -1.534 -1.041 -0.905 D 43 41 3 44 3 0 3 67 87 -7.240 -0.576 -1.632 IL 44 44 3 44 3 1 6 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 5 67 87 -8.197 -0.018 -6.851 -0.577 -1.081 -1.358 1.303 D 46 44 3 47 3 0 2 66 86 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 5 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 4 66 86 -8.573 -0.147 -3.405 -1.616 -1.403 -2.359 1.633 D 49 47 3 50 3 0 1 65 85 -5.620 -0.734 -1.403 IL 50 50 3 50 3 1 5 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 69 - U - - MR 51 50 3 53 3 1 5 65 85 -8.444 -0.018 -6.761 -1.663 -1.629 -2.405 1.665 D 52 50 3 53 3 0 0 64 83 -7.265 -2.442 -0.305 IR 53 53 3 53 3 1 4 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 68 - C - - MR 54 53 3 56 3 1 5 64 84 -8.444 -0.018 -6.761 -1.974 1.681 -2.803 -1.340 D 55 53 3 56 3 0 0 63 82 -7.265 -0.647 -1.494 IR 56 56 3 56 3 1 3 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 67 - U - - MR 57 56 3 59 3 1 4 63 83 -8.573 -0.016 -6.891 -1.926 -1.847 -2.679 1.724 D 58 56 3 59 3 0 0 62 81 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 2 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 66 - U - - MR 60 59 3 62 5 1 4 62 82 -7.298 -0.034 -7.114 -7.326 -8.218 -1.926 -1.847 -2.679 1.724 D 61 59 3 62 5 0 0 61 80 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 65 A U - - MP 63 62 3 67 6 2 5 61 81 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -3.849 -2.797 -3.923 3.343 -4.719 -5.537 -0.429 -4.054 -3.772 1.043 -4.354 0.592 -0.669 -4.547 -2.329 -2.731 ML 64 62 3 67 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 64 G U - - MP 69 68 6 73 6 2 5 59 79 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -3.917 -2.609 -4.104 0.929 -5.061 -5.813 -0.617 -4.094 -3.700 0.947 -4.242 3.340 -0.964 -4.934 -2.556 -2.752 ML 70 68 6 73 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 63 C G - - MP 75 74 6 79 6 2 4 57 77 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -5.064 -5.014 -4.664 -1.207 -3.279 -5.008 3.683 -4.140 -4.735 -1.028 -4.936 -2.972 0.177 -5.098 -1.002 -3.559 ML 76 74 6 79 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 62 C G - - MP 81 80 6 85 6 2 4 55 75 -9.208 -9.147 -0.029 -6.538 -8.203 -8.598 -4.776 -4.767 -4.422 -0.953 -3.061 -4.791 3.592 -3.901 -4.479 -0.760 -4.720 -2.766 0.447 -4.809 -0.386 -3.303 ML 82 80 6 85 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 61 C G - - MP 87 86 6 91 6 2 4 53 73 -9.198 -9.137 -0.026 -7.914 -7.078 -8.589 -4.082 -4.035 -3.936 -0.293 -2.838 -4.481 3.377 -2.014 -3.955 -0.090 -4.318 -2.026 0.992 -4.220 -0.529 -2.825 ML 88 86 6 91 6 1 1 52 71 -6.381 -6.727 -1.137 -1.135 -6.576 -4.106 0.208 0.006 -0.455 0.152 MR 89 86 6 91 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 60 C G - - MP 93 92 6 97 6 2 4 51 71 -9.202 -9.141 -0.020 -7.918 -8.198 -8.593 -4.451 -4.399 -4.249 -0.649 -3.085 -4.743 3.546 -2.211 -4.285 -0.456 -4.601 -2.381 0.509 -4.572 -0.797 -3.148 ML 94 92 6 97 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 50 69 -7.057 -5.786 -1.694 -5.764 -0.777 -3.977 0.357 -0.538 0.116 -0.079 D 96 92 6 97 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 59 C G - - MP 99 98 6 103 6 2 3 49 69 -9.202 -9.141 -0.028 -7.918 -6.772 -8.593 -5.036 -4.983 -4.641 -1.177 -3.261 -4.988 3.677 -4.119 -4.710 -0.996 -4.915 -2.940 0.199 -5.071 -0.983 -3.535 ML 100 98 6 103 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 48 67 -7.057 -5.786 -1.694 -5.764 -0.777 -3.977 0.357 -0.538 0.116 -0.079 D 102 98 6 103 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 58 G C - - MP 105 104 6 109 6 2 3 47 67 -9.194 -9.133 -0.020 -7.909 -8.189 -8.584 -5.138 -3.285 -5.285 -0.071 -5.788 -4.844 -1.054 -5.548 -4.577 3.720 -4.887 -1.002 -1.429 -4.725 -3.114 -4.156 ML 106 104 6 109 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 46 66 -7.151 -5.880 -1.503 -5.858 -0.872 -4.072 0.152 0.112 -0.522 0.153 D 108 104 6 109 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 57 u g - - MP 111 110 6 115 4 2 2 45 65 -7.183 -7.390 -0.045 -5.805 -3.390 -3.402 -0.769 0.023 -2.560 -3.979 1.563 -3.198 -3.395 0.182 -3.818 -1.599 0.887 -3.602 2.839 -2.380 ML 112 110 6 115 4 1 1 46 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 45 65 -4.889 -3.918 -1.785 -0.713 0.357 -0.538 0.116 -0.079 D 114 110 6 115 4 0 0 44 64 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 47 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - u - - - ML 117 116 6 119 3 1 1 43 62 -8.184 -0.018 -6.838 -0.144 -0.565 -0.177 0.618 D 118 116 6 119 3 0 0 42 61 -6.306 -1.819 -0.507 IL 119 119 3 119 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - a - - - ML 120 119 3 122 3 1 1 42 61 -8.561 -0.016 -6.879 0.553 -0.359 -0.579 0.117 D 121 119 3 122 3 0 0 41 60 -5.701 -0.682 -1.484 IL 122 122 3 122 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 56 - U - - MR 123 122 3 125 5 1 1 41 60 -7.298 -0.034 -7.114 -7.326 -8.218 -1.926 -1.847 -2.679 1.724 D 124 122 3 125 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 55 u g - - MP 126 125 3 130 6 2 2 40 59 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -2.976 -3.056 -3.021 0.284 -2.403 -3.720 1.811 -2.988 -3.065 0.407 -0.908 -1.370 1.308 -3.220 2.414 -2.093 ML 127 125 3 130 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 54 G C - - MP 132 131 6 136 6 2 2 38 57 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -4.112 -1.645 -4.096 0.703 -4.872 -4.476 -0.250 -4.574 -4.078 3.388 -4.421 0.376 -0.518 -3.930 -2.224 -3.041 ML 133 131 6 136 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 30 53 U A - - MP 138 137 6 142 6 2 2 36 55 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -4.766 -4.601 -4.538 -0.860 -3.365 -5.048 0.971 -4.098 -4.538 -0.678 -4.882 -2.482 3.545 -4.892 -1.028 -3.296 ML 139 137 6 142 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 31 52 U A - - MP 144 143 6 148 6 2 2 34 53 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -4.766 -4.601 -4.538 -0.860 -3.365 -5.048 0.971 -4.098 -4.538 -0.678 -4.882 -2.482 3.545 -4.892 -1.028 -3.296 ML 145 143 6 148 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 33 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 32 51 G C - - MP 150 149 6 154 4 2 2 32 51 -7.197 -7.404 -0.070 -4.855 -5.199 -3.315 -5.355 -0.113 -5.873 -4.867 -1.123 -5.620 -4.613 3.731 -4.920 -1.035 -1.497 -4.763 -3.187 -4.225 ML 151 149 6 154 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 34 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - U - - - ML 156 155 6 158 3 1 1 29 48 -8.174 -0.018 -6.828 -0.990 -0.130 -1.753 1.193 D 157 155 6 158 3 0 0 28 47 -6.403 -1.281 -0.794 IL 158 158 3 158 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - C - - - ML 159 158 3 161 3 1 1 28 47 -8.573 -0.016 -6.891 -2.313 1.748 -3.144 -1.613 D 160 158 3 161 3 0 0 27 46 -5.620 -0.734 -1.403 IL 161 161 3 161 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 50 - u - - MR 162 161 3 164 3 1 1 27 46 -8.573 -0.016 -6.891 0.149 -0.909 0.012 0.433 D 163 161 3 164 3 0 0 26 44 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 49 - u - - MR 165 164 3 167 5 1 1 26 45 -3.056 -0.213 -7.114 -7.326 -8.218 0.081 0.047 -0.811 0.421 D 166 164 3 167 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 167 167 3 167 5 1 1 26 45 -2.861 -0.436 -6.372 -3.459 -5.646 0.000 0.000 0.000 0.000 [ MATP 42 ] 35 47 a u - - MP 168 167 3 172 6 2 2 25 44 -9.193 -9.132 -0.020 -7.909 -8.188 -8.583 -2.991 1.810 -3.136 2.020 -3.313 -4.034 0.915 -3.342 -3.073 1.519 -3.559 -0.120 0.357 -3.346 -1.150 -2.113 ML 169 167 3 172 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 3 172 6 1 1 24 43 -7.160 -5.889 -1.321 -5.867 -1.001 -4.081 0.143 0.130 -0.534 0.152 D 171 167 3 172 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 36 46 G C - - MP 174 173 6 178 6 2 2 23 42 -9.208 -9.147 -0.020 -7.923 -8.203 -8.598 -5.199 -3.315 -5.355 -0.113 -5.873 -4.867 -1.123 -5.620 -4.613 3.731 -4.920 -1.035 -1.497 -4.763 -3.187 -4.225 ML 175 173 6 178 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 37 45 g c - - MP 180 179 6 184 4 2 2 21 40 -7.197 -7.404 -0.045 -5.818 -3.474 -2.703 -3.584 0.747 -3.738 -4.440 0.329 -3.763 1.898 2.683 -3.977 -0.411 -0.017 -3.794 -1.522 -2.539 ML 181 179 6 184 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 6 184 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 184 184 5 184 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - U - - - ML 186 185 6 188 3 1 1 18 37 -5.701 -0.041 -6.851 -1.926 -1.847 -2.679 1.724 D 187 185 6 188 3 0 0 17 35 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 39 -1.503 -0.754 -4.203 0.000 0.000 0.000 0.000 [ MATL 46 ] 40 - u - - - ML 189 188 3 191 3 1 1 17 35 -8.197 -0.018 -6.851 -0.316 -0.966 0.104 0.687 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 41 - u - - - ML 192 191 3 194 3 1 1 15 33 -5.783 -0.039 -6.851 -0.056 0.012 -0.743 0.518 D 193 191 3 194 3 0 0 14 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.499 -0.757 -4.199 0.000 0.000 0.000 0.000 [ MATL 48 ] 43 - a - - - ML 195 194 3 197 3 1 1 13 31 -8.197 -0.018 -6.851 0.896 -1.051 -1.191 0.285 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 44 - u - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 0.348 -0.957 -1.230 0.836 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME rdlD ACC RF01813 DESC rdlD antitoxin LENG 66 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 16:27:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01813/CM NSEQ 52 EFFN 3.437256 CKSUM 836814090 STATS LOCAL MSV -8.3018 0.71917 STATS LOCAL VITERBI -9.0684 0.71917 STATS LOCAL FORWARD -3.6311 0.71917 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.67368 1.43533 1.29814 1.19942 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 0.00000 * 1 2.29905 2.92683 0.33400 2.04001 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 2 2.41480 2.46342 2.65437 0.28087 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 3 1.84032 0.88100 2.40394 1.08914 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 4 1.99081 1.90744 2.24559 0.49579 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 5 0.95902 2.71939 0.79111 2.32816 5 g - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 6 3.16078 4.09360 0.08858 3.66118 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 7 1.40181 2.15913 1.07900 1.20903 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 8 1.76063 2.18999 1.98470 0.54693 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.12030 4.11098 2.33349 1.46634 0.26236 1.09861 0.40547 9 2.17127 2.29847 2.29137 0.37917 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03631 4.02698 4.02698 1.46634 0.26236 0.29127 1.37561 10 3.05037 0.18823 3.63266 2.32494 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 11 0.22161 3.09784 2.36192 2.82367 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 12 0.09445 3.70312 3.38456 3.45500 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 13 3.16078 4.09360 0.08858 3.66118 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.15479 4.11098 2.06345 1.46634 0.26236 1.09861 0.40547 14 0.36326 2.58739 2.19363 2.13822 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.03756 3.99374 3.99374 1.46634 0.26236 0.22961 1.58399 15 1.89039 2.28330 2.45175 0.41416 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 16 2.76903 2.53210 3.28849 0.19787 16 U - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 17 0.32923 3.30817 1.61777 3.08787 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 18 2.14562 3.34916 0.21538 3.17824 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 19 3.68069 0.14774 3.51235 2.49722 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 20 3.45345 0.20798 3.26777 2.13667 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 21 2.92702 0.32775 2.72756 1.82930 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04337 4.11098 3.64785 1.46634 0.26236 1.09861 0.40547 22 3.25331 0.21441 3.06277 2.22956 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03366 4.10128 4.10128 1.46634 0.26236 1.27788 0.32660 23 3.63907 0.15224 3.47810 2.47600 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04834 4.10128 3.48538 1.46634 0.26236 1.27788 0.32660 24 2.85067 3.64236 0.11873 3.57722 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03415 4.08708 4.08708 1.46634 0.26236 0.87484 0.53945 25 2.33135 1.75087 2.67512 0.41504 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.03366 4.10128 4.10128 1.46634 0.26236 1.27788 0.32660 26 1.51999 1.80833 1.48586 0.93892 26 u - - - 1.38629 1.38629 1.38629 1.38629 0.03366 4.10128 4.10128 1.46634 0.26236 1.27788 0.32660 27 0.98321 1.63714 1.80719 1.31961 27 a - - - 1.38629 1.38629 1.38629 1.38629 0.03366 4.10128 4.10128 1.46634 0.26236 0.81476 0.58474 28 2.58411 1.49575 2.07296 0.55401 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 29 2.12625 2.98318 0.25933 2.83849 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 30 3.54137 2.34522 3.34841 0.17428 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 31 3.53957 2.34504 3.34748 0.17440 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 32 2.88899 3.69694 0.11295 3.63549 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.05146 4.11098 3.38838 1.46634 0.26236 1.09861 0.40547 33 2.25164 1.47603 2.78899 0.50294 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.03393 4.09345 4.09345 1.46634 0.26236 0.67853 0.70798 34 3.40266 0.11698 3.96516 2.84480 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.05957 4.11098 3.18351 1.46634 0.26236 1.09861 0.40547 35 0.54976 2.16150 1.57524 2.29460 35 A - - < 1.38629 1.38629 1.38629 1.38629 0.03420 4.08561 4.08561 1.46634 0.26236 0.58283 0.81716 36 2.88504 3.69141 0.11357 3.62798 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 37 2.23843 2.75031 0.27490 2.66187 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 38 3.05352 2.94438 3.58519 0.13646 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05146 3.38838 4.11098 0.79072 0.60425 1.09861 0.40547 39 1.67286 2.14818 1.27722 0.87519 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 40 1.44658 1.35370 1.92279 1.02125 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05023 3.42355 4.11098 0.81491 0.58462 1.09861 0.40547 41 0.71974 2.21930 2.31932 1.18386 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 42 1.13273 2.15545 2.34515 0.76322 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 43 1.05829 0.83926 2.55850 1.94141 45 c - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 44 3.74084 0.13981 3.50838 2.56662 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 45 2.49953 0.82765 2.01069 1.05871 47 c - - > 1.38629 1.38629 1.38629 1.38629 0.19056 1.85078 4.11098 0.19700 1.72142 1.09861 0.40547 46 1.33945 1.32644 1.98014 1.09500 49 u - - - 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 47 1.29203 2.08920 1.35042 1.07187 50 u - - - 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 48 3.81249 0.13554 3.54367 2.58029 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 49 0.19777 3.54135 2.18099 3.28252 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 50 0.19750 3.54383 2.18140 3.28522 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 51 3.08409 0.34200 2.80118 1.69749 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 52 1.81534 2.58684 0.40137 2.37992 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 53 3.05352 2.94438 3.58519 0.13646 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 54 2.20374 2.84638 0.27618 2.61895 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 55 3.68921 0.14660 3.46791 2.52342 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 56 2.74766 3.64359 0.13135 3.41562 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 57 2.48761 3.23069 0.19988 2.83822 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.05023 4.11098 3.42355 1.46634 0.26236 1.09861 0.40547 58 2.06778 2.90248 0.30045 2.54893 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03389 4.09464 4.09464 1.46634 0.26236 0.69601 0.69029 59 2.53014 3.42658 0.16501 3.21973 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 60 2.78058 3.68268 0.12642 3.45455 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 61 3.38773 2.28407 3.14388 0.19695 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 62 3.30952 2.22881 3.11092 0.20918 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 63 3.05352 2.94438 3.58519 0.13646 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.03333 4.11098 4.11098 1.46634 0.26236 1.09861 0.40547 64 3.05352 2.94438 3.58519 0.13646 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.14255 4.11098 2.15015 1.46634 0.26236 1.09861 0.40547 65 3.15113 0.14915 3.72444 2.63620 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.03711 4.00553 4.00553 1.46634 0.26236 2.20885 0.11634 66 2.84901 2.77294 3.37495 0.16794 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.01873 3.98715 * 1.46634 0.26236 0.00000 * //