INFERNAL1/a [1.1.5 | Sep 2023] NAME pntA ACC RF01810 DESC pntA sRNA STATES 195 NODES 50 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 23:51:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01810/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 1.987305 CKSUM 2945289530 NULL 0.000 0.000 0.000 0.000 GA 54.00 TC 66.70 NC 48.10 EFP7GF -9.4278 0.71925 ECMLC 0.52952 -9.36725 2.94996 1600000 816047 0.001471 ECMGC 0.37381 -14.98123 0.90004 1600000 151453 0.002641 ECMLI 0.48918 -8.44395 4.34942 1600000 626799 0.001914 ECMGI 0.40252 -9.95552 3.66246 1600000 96086 0.004163 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 0 1 78 97 -5.228 -15.698 -0.039 IL 1 1 2 1 3 1 18 101 144 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 1 17 80 99 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 84 0 16 78 97 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 0 40 59 -0.044 -6.845 -6.253 -6.893 [ MATP 3 ] 1 26 U A - - MP 5 4 1 9 6 2 2 40 59 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.748 -3.700 -3.655 -0.028 -2.674 -4.250 1.639 -3.363 -3.673 0.215 -4.078 -1.729 3.024 -3.905 0.478 -2.548 ML 6 4 1 9 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 7 4 1 9 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 9 9 5 9 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 25 U A - - MP 11 10 6 15 6 2 2 38 57 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.756 -3.708 -3.662 -0.035 -2.679 -4.256 1.634 -3.369 -3.680 0.209 -4.085 -1.736 3.032 -3.913 0.459 -2.555 ML 12 10 6 15 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 6 15 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 6 15 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 24 U A - - MP 17 16 6 21 6 2 2 36 55 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.246 -4.072 -4.078 -0.363 -3.008 -4.637 1.322 -3.708 -4.082 -0.117 -4.453 -1.969 3.354 -4.395 -0.683 -2.901 ML 18 16 6 21 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 23 U A - - MP 23 22 6 27 6 2 2 34 53 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.246 -4.072 -4.078 -0.363 -3.008 -4.637 1.322 -3.708 -4.082 -0.117 -4.453 -1.969 3.354 -4.395 -0.683 -2.901 ML 24 22 6 27 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 22 A U - - MP 29 28 6 33 6 2 2 32 51 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.834 -2.854 -3.850 3.359 -4.209 -5.275 0.094 -3.889 -3.739 1.032 -4.289 -0.323 -0.324 -4.456 -1.847 -2.681 ML 30 28 6 33 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 6 33 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 21 U A - - MP 35 34 6 39 6 2 2 30 49 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.246 -4.072 -4.078 -0.363 -3.008 -4.637 1.322 -3.708 -4.082 -0.117 -4.453 -1.969 3.354 -4.395 -0.683 -2.901 ML 36 34 6 39 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 20 G C - - MP 41 40 6 45 6 2 2 28 47 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.789 -3.116 -4.892 0.169 -5.298 -4.712 -0.652 -5.138 -4.358 3.649 -4.692 -0.817 -1.035 -4.498 -2.691 -3.768 ML 42 40 6 45 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 19 G C - - MP 47 46 6 51 4 2 2 26 45 -6.971 -7.178 -0.052 -5.593 -4.789 -3.116 -4.892 0.169 -5.298 -4.712 -0.652 -5.138 -4.358 3.649 -4.692 -0.817 -1.035 -4.498 -2.691 -3.768 ML 48 46 6 51 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 4 1 1 26 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 50 46 6 51 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 51 51 5 51 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 52 52 6 52 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - A - - - ML 53 52 6 55 3 1 1 23 42 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 54 52 6 55 3 0 0 22 41 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - U - - - ML 56 55 3 58 3 1 1 22 41 -7.986 -0.020 -6.640 -0.980 -0.588 -1.718 1.336 D 57 55 3 58 3 0 0 21 40 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - A - - - ML 59 58 3 61 3 1 1 21 40 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 60 58 3 61 3 0 0 20 39 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - A - - - ML 62 61 3 64 3 1 1 20 39 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 63 61 3 64 3 0 0 19 38 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - U - - - ML 65 64 3 67 3 1 1 19 37 -7.986 -0.020 -6.640 -1.526 -1.516 -2.262 1.630 D 66 64 3 67 3 0 0 18 37 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - g - - - ML 68 67 3 70 3 1 1 18 36 -7.986 -0.020 -6.640 -0.099 -0.887 0.912 -0.633 D 69 67 3 70 3 0 0 17 36 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - A - - - ML 71 70 3 73 3 1 1 16 35 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 72 70 3 73 3 0 0 16 34 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - A - - - ML 74 73 3 76 3 1 1 15 33 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 75 73 3 76 3 0 0 15 33 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 77 76 3 79 3 1 1 13 31 -7.986 -0.020 -6.640 1.404 -1.672 -0.753 -1.165 D 78 76 3 79 3 0 0 13 32 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - - - ML 80 79 3 82 2 1 1 1 1 * 0.000 1.728 -2.416 -2.043 -1.963 D 81 79 3 82 2 0 0 0 0 * 0.000 IL 82 82 3 82 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 83 82 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 84 3 1 85 3 0 1 51 70 -7.986 -0.020 -6.640 IL 85 85 2 85 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - A - - - ML 86 85 2 88 3 1 2 51 70 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 87 85 2 88 3 0 0 49 69 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - U - - - ML 89 88 3 91 3 1 1 49 69 -7.986 -0.020 -6.640 -0.561 -1.029 -1.545 1.316 D 90 88 3 91 3 0 0 48 67 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - A - - - ML 92 91 3 94 5 1 1 48 67 -7.113 -0.039 -6.928 -7.140 -8.032 1.398 -1.665 -0.736 -1.156 D 93 91 3 94 5 0 0 47 66 -4.959 -0.803 -4.221 -2.596 -2.508 IL 94 94 3 94 5 1 1 49 68 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 30 62 C G - - MP 95 94 3 99 6 2 2 47 66 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.602 -4.513 -4.283 -0.740 -2.990 -4.688 3.567 -3.805 -4.334 -0.507 -4.590 -2.461 0.519 -4.668 -0.697 -3.172 ML 96 94 3 99 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 3 99 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 3 99 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 31 61 C G - - MP 101 100 6 105 6 2 2 45 64 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.970 -3.933 -3.763 -0.183 -2.579 -4.249 3.221 -3.339 -3.789 0.045 -4.126 -1.940 1.025 -4.067 0.677 -2.646 ML 102 100 6 105 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 32 60 U G - - MP 107 106 6 111 6 2 2 43 62 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -4.138 -4.061 -3.830 -0.391 -2.572 -4.246 1.716 -3.350 -3.870 -0.206 -4.157 -2.060 0.860 -4.219 3.035 -2.739 ML 108 106 6 111 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 33 59 G U - - MP 113 112 6 117 4 2 2 41 60 -6.886 -8.131 -0.080 -4.585 -3.645 -2.406 -3.815 1.115 -4.555 -5.279 -0.155 -3.834 -3.469 1.318 -3.991 3.114 -0.513 -4.481 -2.097 -2.509 ML 114 112 6 117 4 1 1 41 60 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 4 1 1 40 60 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 116 112 6 117 4 0 0 39 58 -12.737 -14.007 -2.036 -0.404 IL 117 117 5 117 4 1 1 41 60 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 118 118 6 118 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 58 - G - - MR 119 118 6 121 5 1 1 39 58 -7.113 -0.039 -6.928 -7.140 -8.032 -0.165 -1.811 1.259 -1.219 D 120 118 6 121 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 121 121 3 121 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 34 57 G U - - MP 122 121 3 126 6 2 2 38 57 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.645 -2.406 -3.815 1.115 -4.555 -5.279 -0.155 -3.834 -3.469 1.318 -3.991 3.114 -0.513 -4.481 -2.097 -2.509 ML 123 121 3 126 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 56 A U - - MP 128 127 6 132 4 2 2 36 55 -6.886 -8.131 -0.080 -4.585 -3.834 -2.854 -3.850 3.359 -4.209 -5.275 0.094 -3.889 -3.739 1.032 -4.289 -0.323 -0.324 -4.456 -1.847 -2.681 ML 129 127 6 132 4 1 1 36 55 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 1 35 54 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 0 34 53 -12.737 -14.007 -2.036 -0.404 IL 132 132 5 132 4 1 1 36 55 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 55 - G - - MR 134 133 6 136 5 1 1 34 53 -7.113 -0.039 -6.928 -7.140 -8.032 -0.680 -1.491 1.188 -0.431 D 135 133 6 136 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 136 136 3 136 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 36 54 A U - - MP 137 136 3 141 6 2 2 33 52 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.280 -2.696 -3.336 3.059 -3.489 -4.403 0.552 -3.509 -3.363 1.219 -3.894 -0.422 0.226 -3.647 -1.297 -0.469 ML 138 136 3 141 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 37 53 u g - - MP 143 142 6 147 6 2 2 31 50 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.859 -3.868 -3.652 -0.206 -2.493 -4.127 2.414 -3.251 -3.692 0.003 -4.027 -1.962 1.030 -3.961 2.479 -2.574 ML 144 142 6 147 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 38 52 A U - - MP 149 148 6 153 6 2 2 29 48 -9.116 -9.056 -0.021 -7.832 -8.112 -8.507 -3.834 -2.854 -3.850 3.359 -4.209 -5.275 0.094 -3.889 -3.739 1.032 -4.289 -0.323 -0.324 -4.456 -1.847 -2.681 ML 150 148 6 153 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 39 51 A U - - MP 155 154 6 159 4 2 2 27 46 -6.971 -7.178 -0.052 -5.593 -3.834 -2.854 -3.850 3.359 -4.209 -5.275 0.094 -3.889 -3.739 1.032 -4.289 -0.323 -0.324 -4.456 -1.847 -2.681 ML 156 154 6 159 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 158 154 6 159 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 159 159 5 159 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 160 160 6 160 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - U - - - ML 161 160 6 163 3 1 1 25 43 -7.986 -0.020 -6.640 -1.526 -1.516 -2.262 1.630 D 162 160 6 163 3 0 0 24 43 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - U - - - ML 164 163 3 166 3 1 1 23 42 -7.986 -0.020 -6.640 -1.526 -1.516 -2.262 1.630 D 165 163 3 166 3 0 0 22 41 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - U - - - ML 167 166 3 169 3 1 1 22 41 -7.986 -0.020 -6.640 -1.526 -1.516 -2.262 1.630 D 168 166 3 169 3 0 0 21 40 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - U - - - ML 170 169 3 172 3 1 1 21 40 -7.986 -0.020 -6.640 -0.815 -0.142 -1.566 1.129 D 171 169 3 172 3 0 0 20 39 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - A - - - ML 173 172 3 175 3 1 1 20 39 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 174 172 3 175 3 0 0 19 38 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - C - - - ML 176 175 3 178 3 1 1 19 37 -7.986 -0.020 -6.640 -1.240 1.367 -2.065 -0.399 D 177 175 3 178 3 0 0 18 37 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - - - ML 179 178 3 181 3 1 1 18 36 -7.986 -0.020 -6.640 1.131 -1.134 -1.182 -0.131 D 180 178 3 181 3 0 0 17 36 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - A - - - ML 182 181 3 184 3 1 1 16 35 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - A - - - ML 185 184 3 187 3 1 1 15 33 -7.986 -0.020 -6.640 1.728 -2.416 -2.043 -1.963 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - A - - - ML 188 187 3 190 3 1 1 13 31 -7.986 -0.020 -6.640 1.404 -1.672 -0.753 -1.165 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - U - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 -1.526 -1.516 -2.262 1.630 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME pntA ACC RF01810 DESC pntA sRNA LENG 62 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 23:51:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01810/CM NSEQ 10 EFFN 2.700195 CKSUM 2945289530 STATS LOCAL MSV -8.3859 0.71925 STATS LOCAL VITERBI -8.7546 0.71925 STATS LOCAL FORWARD -3.3711 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.07903 1.91996 1.59563 1.16899 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 0.00000 * 1 2.79310 1.69173 2.55830 0.38989 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 2 2.79699 1.69757 2.56407 0.38730 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 3 3.16588 2.04851 2.93471 0.25392 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 4 3.16356 2.04834 2.93362 0.25415 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 5 0.27950 2.97875 1.98019 2.90153 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 6 3.16061 2.04813 2.93223 0.25445 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 7 2.69106 3.40531 0.14659 3.34251 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 8 2.69062 3.40474 0.14668 3.34173 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 9 0.12954 3.40545 3.11351 3.12661 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 10 2.26371 1.86222 2.78222 0.38742 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 11 0.12954 3.40545 3.11351 3.12661 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 12 0.12954 3.40545 3.11351 3.12661 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 13 2.76694 2.70446 3.29020 0.18273 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 14 1.52704 2.05631 0.66393 1.96561 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 15 0.12954 3.40545 3.11351 3.12661 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 16 0.12954 3.40545 3.11351 3.12661 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 17 0.34983 2.73985 1.95950 2.41150 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 18 0.12954 3.40545 3.11351 3.12661 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 19 3.53290 0.17456 3.24227 2.38726 19 C - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 20 3.53383 0.17449 3.24270 2.38743 20 C - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 21 0.28866 3.11862 1.88476 2.90680 21 A - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 22 3.12315 2.29335 2.78772 0.23131 22 U - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 23 0.28865 3.11870 1.88477 2.90690 23 A - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 24 0.28876 3.11804 1.88468 2.90612 24 A - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 25 0.51866 2.72559 1.34096 2.55647 25 A - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 26 0.52528 2.71610 1.33139 2.54636 26 A - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 27 0.12954 3.40545 3.11351 3.12661 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 28 1.89388 2.25701 2.64815 0.39442 28 U - - - 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 29 0.35424 2.73350 1.94529 2.40396 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 30 3.37882 0.20123 3.16793 2.24340 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 31 2.87128 0.43963 2.64600 1.47769 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 32 3.09229 1.65955 2.90190 0.34325 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 33 1.99728 3.06785 0.26905 2.92495 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 34 1.99183 3.05557 0.27188 2.90932 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 35 0.28058 2.97353 1.97908 2.89427 35 A - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 36 0.45005 2.57385 1.83241 2.07039 36 A - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 37 2.93097 1.05074 2.73589 0.63085 37 U - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 38 0.28019 2.97545 1.97949 2.89694 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 39 0.27998 2.97642 1.97970 2.89830 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 40 2.76694 2.70446 3.29020 0.18273 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 41 2.76694 2.70446 3.29020 0.18273 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 42 2.76694 2.70446 3.29020 0.18273 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 43 2.11545 1.48611 2.64578 0.54091 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 44 0.12954 3.40545 3.11351 3.12661 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 45 2.51441 0.34485 3.10454 1.79625 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 46 0.54264 2.28603 2.33132 1.51436 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 47 0.12954 3.40545 3.11351 3.12661 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 48 0.12954 3.40545 3.11351 3.12661 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 49 0.34983 2.73985 1.95950 2.41150 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 50 2.76694 2.70446 3.29020 0.18273 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 51 3.12332 2.29337 2.78779 0.23129 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 52 3.12485 2.29359 2.78841 0.23113 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 53 2.08500 2.89822 0.28294 2.70300 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 54 2.69785 2.07621 2.39177 0.33439 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 55 2.02871 2.60608 0.47012 1.77347 55 G - - - 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 56 3.12749 2.29396 2.78947 0.23086 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 57 3.13512 2.04626 2.86419 0.26103 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 58 1.56808 2.85111 0.43397 2.45522 58 G - - - 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 59 3.13097 2.04595 2.86235 0.26145 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 60 2.22067 3.08112 0.24018 2.82899 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 61 2.05556 2.80669 0.30199 2.62798 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03950 3.94427 3.94427 1.46634 0.26236 1.09861 0.40547 62 2.52141 3.33097 0.17415 3.12988 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.01995 3.92472 * 1.46634 0.26236 0.00000 * //