# STOCKHOLM 1.0
#=GF ID pntA
#=GF AC RF01810
#=GF DE pntA sRNA
#=GF AU Moore B; 0000-0002-4074-1933
#=GF GA 54.0
#=GF NC 48.1
#=GF TC 66.7
#=GF SE Published; PMID:19531245
#=GF SS Published; PMID:19531245
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 34.22 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 19531245
#=GF RT Identification of candidate structured RNAs in the marine organism
#=GF RT 'Candidatus Pelagibacter ubique'.
#=GF RA Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ,
#=GF RA Breaker RR
#=GF RL BMC Genomics. 2009;10:268.
#=GF WK Pelagibacter_ubique
#=GF SQ 10

AACY020043448.1/763-824      UUUUAUGGAUAAUGAAAACCAUAAAAAUACCUGGAACAAUUUUACAAAAUUUGUGUUGUGGG
AAPV01000001.1/326636-326575 UUUUAUGGACAAUCAAGACCAUAAGAAUACCUGGAAUAAUUUCACAAAGUUUGUGUUGUGGG
AACY023236858.1/1041-1102    UUUUAUGGAUAAUAAAAACCAUAAAGAUGCUUGGAUUAAUUUCACUAAAUUUGUGUUGUGGG
AACY023782316.1/994-1055     UUUUAUGGAUAAUGAAAACCAUAAAAAUACCUGGAACAAUUUUACUAAAUUUGUGUUGUGGG
AACY022713819.1/171-110      UUUUAUGGAUAAUGAAAACCAUAAAAAAACCUGGAACAAUUUUACAAAAUUUGUGUUGUGGG
AACY023941244.1/682-743      UUUUAUGGAUAAUGAAAACCAUAAAAAUACCUGGAAUAAUUUUAUAAAAUUUGUGUUGUGGG
AACY020724196.1/672-733      UUUUAUGGAUAAUGAAAACCAUAAAAAUACCUGGAAUAAUUUUACAAAAUUUGUUUUAUGGG
AACY020917115.1/270-209      UUUUAUGGAUAAUGAAAACCAUAAAAAUACCUGGAAUAAUUUUACAAAAUUUGUUUUGUGGG
AACY020036207.1/1115-1054    UUUUAUGGAUAAUGAAAACCAUAAAAAUACCUGGAAUAAUUUUACAAAAUUUGUGUUAUGGG
AACY023876655.1/876-815      UUUUAUGGAUAAUGAAAACCAUAAAAAUACCUGGAAUAAUUUUACAAAAUUUGUGUUGUGGG
#=GC SS_cons                 <<<<<<<<__________>>>>>>>>:::<<<<<<<<<<___________>>>>->>->>>>
#=GC RF                      UUUUAUGGAUAAUgAAAACCAUAAAAAUACCUGGAAuAAUUUUACAAAAUUUgUGUUGUGGG
//
