INFERNAL1/a [1.1.5 | Sep 2023] NAME Lambda_thermo ACC RF01804 DESC Lambda phage CIII thermoregulator element STATES 181 NODES 41 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 03:48:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF01804/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.084961 CKSUM 653206862 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.20 NC 41.10 EFP7GF -9.7693 0.71928 ECMLC 0.68977 -5.65395 2.90295 1600000 439033 0.002733 ECMGC 0.46548 -16.48103 -3.70960 1600000 152713 0.002619 ECMLI 0.68327 -4.24266 3.82967 1600000 298236 0.004024 ECMGI 0.51816 -11.46674 -0.82744 1600000 99147 0.004034 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 94 -7.010 -7.217 -0.051 -5.631 IL 1 1 2 1 4 1 14 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 12 75 95 -8.022 -0.020 -6.676 -1.594 -1.571 -2.333 1.648 D 4 2 3 5 3 0 9 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 11 74 93 -8.022 -0.020 -6.676 1.743 -2.489 -2.109 -2.043 D 7 5 3 8 3 0 8 72 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 11 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 10 73 92 -8.409 -0.173 -3.187 1.743 -2.489 -2.109 -2.043 D 10 8 3 11 3 0 8 72 91 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 11 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 59 - G - - MR 12 11 3 14 3 1 10 72 91 -8.256 -0.020 -6.574 -1.355 -2.538 1.666 -1.924 D 13 11 3 14 3 0 6 70 90 -7.292 -0.632 -1.521 IR 14 14 3 14 3 1 10 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 58 - u - - MR 15 14 3 17 3 1 10 71 90 -8.409 -0.018 -6.727 -0.761 0.268 -1.532 0.896 D 16 14 3 17 3 0 3 69 89 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 9 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 57 - C - - MR 18 17 3 20 3 1 9 70 89 -8.409 -0.018 -6.727 -1.883 1.660 -2.711 -1.268 D 19 17 3 20 3 0 3 68 88 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 8 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 56 - U - - MR 21 20 3 23 3 1 8 69 88 -8.409 -0.018 -6.727 -1.594 -1.571 -2.333 1.648 D 22 20 3 23 3 0 2 67 87 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 7 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 55 - U - - MR 24 23 3 26 5 1 7 68 87 -7.144 -0.038 -6.960 -7.172 -8.063 -1.594 -1.571 -2.333 1.648 D 25 23 3 26 5 0 2 66 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 5 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 4 54 G C - - MP 27 26 3 31 6 2 7 67 86 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -4.859 -3.150 -4.970 0.121 -5.398 -4.739 -0.733 -5.221 -4.404 3.665 -4.732 -0.854 -1.115 -4.545 -2.777 -3.845 ML 28 26 3 31 6 1 3 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 4 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 4 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 53 G C - - MP 33 32 6 37 4 2 5 65 84 -7.010 -7.217 -0.051 -5.631 -4.859 -3.150 -4.970 0.121 -5.398 -4.739 -0.733 -5.221 -4.404 3.665 -4.732 -0.854 -1.115 -4.545 -2.777 -3.845 ML 34 32 6 37 4 1 2 65 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 1 65 84 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 0 64 83 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 4 66 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 3 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 6 - A - - - ML 39 38 6 41 5 1 5 62 82 -7.144 -0.038 -6.960 -7.172 -8.063 1.743 -2.489 -2.109 -2.043 D 40 38 6 41 5 0 0 61 81 -4.959 -0.803 -4.221 -2.596 -2.508 IL 41 41 3 41 5 1 2 63 82 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 52 G C - - MP 42 41 3 46 6 2 5 61 81 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -4.859 -3.150 -4.970 0.121 -5.398 -4.739 -0.733 -5.221 -4.404 3.665 -4.732 -0.854 -1.115 -4.545 -2.777 -3.845 ML 43 41 3 46 6 1 1 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 2 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 51 C G - - MP 48 47 6 52 6 2 4 59 79 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -4.680 -4.597 -4.347 -0.817 -3.037 -4.742 3.589 -3.860 -4.401 -0.595 -4.648 -2.546 0.464 -4.740 -0.747 -3.237 ML 49 47 6 52 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 50 A U - - MP 54 53 6 58 4 2 3 57 77 -7.010 -7.217 -0.051 -5.631 -3.898 -2.903 -3.909 3.397 -4.301 -5.374 0.006 -3.944 -3.796 0.963 -4.349 -0.361 -0.411 -4.543 -1.934 -2.736 ML 55 53 6 58 4 1 1 58 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 1 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - C - - - ML 60 59 6 62 3 1 2 55 74 -8.022 -0.020 -6.676 -1.883 1.660 -2.711 -1.268 D 61 59 6 62 3 0 0 54 73 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - g - - - ML 63 62 3 65 3 1 1 54 73 -8.409 -0.018 -6.727 0.516 -1.500 0.752 -0.909 D 64 62 3 65 3 0 0 53 72 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 49 - C - - MR 66 65 3 68 5 1 1 53 72 -7.144 -0.038 -6.960 -7.172 -8.063 -1.883 1.660 -2.711 -1.268 D 67 65 3 68 5 0 0 52 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 48 C G - - MP 69 68 3 73 6 2 2 52 71 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -4.680 -4.597 -4.347 -0.817 -3.037 -4.742 3.589 -3.860 -4.401 -0.595 -4.648 -2.546 0.464 -4.740 -0.747 -3.237 ML 70 68 3 73 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 47 C G - - MP 75 74 6 79 6 2 2 50 69 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -4.680 -4.597 -4.347 -0.817 -3.037 -4.742 3.589 -3.860 -4.401 -0.595 -4.648 -2.546 0.464 -4.740 -0.747 -3.237 ML 76 74 6 79 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 46 A U - - MP 81 80 6 85 4 2 2 48 67 -7.010 -7.217 -0.051 -5.631 -3.898 -2.903 -3.909 3.397 -4.301 -5.374 0.006 -3.944 -3.796 0.963 -4.349 -0.361 -0.411 -4.543 -1.934 -2.736 ML 82 80 6 85 4 1 1 48 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 48 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 47 66 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 50 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - U - - - ML 87 86 6 89 5 1 1 45 64 -7.144 -0.038 -6.960 -7.172 -8.063 -1.594 -1.571 -2.333 1.648 D 88 86 6 89 5 0 0 44 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 89 89 3 89 5 1 1 46 65 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 45 G C - - MP 90 89 3 94 6 2 2 44 63 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -4.859 -3.150 -4.970 0.121 -5.398 -4.739 -0.733 -5.221 -4.404 3.665 -4.732 -0.854 -1.115 -4.545 -2.777 -3.845 ML 91 89 3 94 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 44 C G - - MP 96 95 6 100 6 2 2 42 61 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -4.680 -4.597 -4.347 -0.817 -3.037 -4.742 3.589 -3.860 -4.401 -0.595 -4.648 -2.546 0.464 -4.740 -0.747 -3.237 ML 97 95 6 100 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 43 A U - - MP 102 101 6 106 6 2 2 40 59 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -3.898 -2.903 -3.909 3.397 -4.301 -5.374 0.006 -3.944 -3.796 0.963 -4.349 -0.361 -0.411 -4.543 -1.934 -2.736 ML 103 101 6 106 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 42 A U - - MP 108 107 6 112 6 2 2 38 57 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -3.898 -2.903 -3.909 3.397 -4.301 -5.374 0.006 -3.944 -3.796 0.963 -4.349 -0.361 -0.411 -4.543 -1.934 -2.736 ML 109 107 6 112 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 41 u a - - MP 114 113 6 118 6 2 2 36 55 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -3.489 -3.474 -3.421 0.153 -2.486 -4.033 1.796 -3.164 -3.442 0.363 -3.858 -1.551 2.489 -3.664 1.640 -2.359 ML 115 113 6 118 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 40 a u - - MP 120 119 6 124 4 2 2 34 53 -7.010 -7.217 -0.051 -5.631 -3.121 1.932 -3.270 2.228 -3.674 -4.373 0.323 -3.465 -3.146 1.526 -3.668 0.046 0.066 -3.604 -1.478 -2.182 ML 121 119 6 124 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 36 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - U - - - ML 126 125 6 128 3 1 1 32 50 -8.409 -0.018 -6.727 -1.594 -1.571 -2.333 1.648 D 127 125 6 128 3 0 0 30 49 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 39 - C - - MR 129 128 3 131 5 1 1 31 49 -7.144 -0.038 -6.960 -7.172 -8.063 -1.883 1.660 -2.711 -1.268 D 130 128 3 131 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 38 g c - - MP 132 131 3 136 6 2 2 30 48 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -2.495 -0.489 -2.659 1.036 -2.790 0.051 0.882 -3.005 -2.680 2.582 -3.117 -0.168 0.655 -2.672 -0.777 -1.797 ML 133 131 3 136 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 37 c g - - MP 138 137 6 142 6 2 2 28 46 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -1.954 -2.085 -0.411 0.964 -1.973 -2.942 2.060 -2.380 -2.180 1.017 0.256 -0.595 1.264 -2.266 -0.078 -1.327 ML 139 137 6 142 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 36 c g - - MP 144 143 6 148 6 2 2 26 44 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -3.848 -3.853 -3.659 -0.177 -2.517 -4.152 2.612 -3.267 -3.693 0.024 -4.039 -1.934 1.036 -3.959 2.248 -2.575 ML 145 143 6 148 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 35 a u - - MP 150 149 6 154 6 2 2 24 42 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -2.037 -2.028 -2.210 1.770 -2.153 -3.058 1.372 -0.460 -2.253 1.246 -2.801 -0.358 1.140 -2.359 -0.247 0.564 ML 151 149 6 154 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 34 U G - - MP 156 155 6 160 6 2 2 22 40 -9.132 -9.071 -0.021 -7.847 -8.127 -8.522 -4.213 -4.139 -3.887 -0.461 -2.607 -4.292 1.682 -3.392 -3.929 -0.289 -4.208 -2.136 0.816 -4.287 3.080 -2.794 ML 157 155 6 160 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 33 U G - - MP 162 161 6 166 4 2 2 20 38 -7.010 -7.217 -0.051 -5.631 -4.213 -4.139 -3.887 -0.461 -2.607 -4.292 1.682 -3.392 -3.929 -0.289 -4.208 -2.136 0.816 -4.287 3.080 -2.794 ML 163 161 6 166 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - G - - - ML 168 167 6 170 3 1 1 16 35 -8.022 -0.020 -6.676 -1.704 -2.944 1.750 -2.331 D 169 167 6 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - C - - - ML 171 170 3 173 3 1 1 15 33 -8.022 -0.020 -6.676 -1.883 1.660 -2.711 -1.268 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - c - - - ML 174 173 3 176 3 1 1 13 31 -8.022 -0.020 -6.676 0.433 0.505 -1.204 -0.327 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - G - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 -1.704 -2.944 1.750 -2.331 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Lambda_thermo ACC RF01804 DESC Lambda phage CIII thermoregulator element LENG 59 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 03:48:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF01804/CM NSEQ 5 EFFN 2.905273 CKSUM 653206862 STATS LOCAL MSV -8.0145 0.71928 STATS LOCAL VITERBI -8.6534 0.71928 STATS LOCAL FORWARD -3.7148 0.71928 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65010 1.28716 1.27393 1.37759 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 0.00000 * 1 2.85144 2.77497 3.37745 0.16753 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 2 0.11787 3.49387 3.19370 3.22428 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 3 0.11787 3.49387 3.19370 3.22428 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 4 2.74677 3.48984 0.13601 3.42576 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 5 2.74907 3.49285 0.13558 3.42988 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 6 0.11787 3.49387 3.19370 3.22428 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 7 2.75358 3.49876 0.13475 3.43796 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 8 3.46437 0.18400 3.26774 2.31592 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 9 0.25077 3.09286 2.06226 3.01066 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 10 3.15416 0.14871 3.72739 2.63869 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 11 1.00817 2.61404 0.79246 2.21507 11 g - - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 12 3.46308 0.18410 3.26708 2.31568 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 13 3.46371 0.18405 3.26740 2.31580 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 14 0.25071 3.09317 2.06233 3.01107 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 15 2.85144 2.77497 3.37745 0.16753 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 16 2.75352 3.49868 0.13476 3.43786 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 17 3.46427 0.18400 3.26769 2.31590 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 18 0.25077 3.09284 2.06226 3.01062 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 19 0.25090 3.09214 2.06210 3.00967 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 20 2.65980 1.56619 2.44563 0.45488 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 21 0.40743 2.80318 1.60350 2.61954 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 22 2.85144 2.77497 3.37745 0.16753 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 23 1.67053 1.63513 0.72626 2.01584 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 24 1.62273 1.16865 1.32861 1.48275 24 c - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 25 2.94109 0.88730 2.74046 0.75314 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 26 1.29940 1.49920 1.60822 1.19155 26 u - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 27 3.16478 1.70532 2.98682 0.32074 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 28 3.16379 1.70532 2.98632 0.32083 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 29 2.95727 3.86775 0.11082 3.44095 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 30 3.15416 0.14871 3.72739 2.63869 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 31 1.06717 0.95664 2.36636 1.72588 31 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 32 2.95727 3.86775 0.11082 3.44095 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 33 2.27390 3.16756 0.22305 2.90212 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 34 2.27442 3.16844 0.22287 2.90307 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 35 1.82406 1.79803 1.56083 0.76993 35 u - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 36 2.09908 2.90058 0.28034 2.70438 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 37 1.71478 1.96710 0.68444 1.73862 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 38 2.25177 0.56412 1.98122 1.67117 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 39 3.15416 0.14871 3.72739 2.63869 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 40 2.83038 0.77258 2.59838 0.90437 40 c - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 41 0.89377 2.61100 0.84530 2.43042 41 g - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 42 3.22894 2.38550 2.89981 0.20663 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 43 3.22820 2.38538 2.89950 0.20670 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 44 2.59175 3.42791 0.15948 3.21715 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 45 3.60237 0.16283 3.32579 2.44118 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 46 3.23835 2.38691 2.90372 0.20575 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 47 2.59956 3.43951 0.15773 3.23056 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 48 2.60234 3.44363 0.15712 3.23533 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 49 3.15416 0.14871 3.72739 2.63869 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 50 3.22833 2.38540 2.89955 0.20668 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 51 2.59184 3.42805 0.15946 3.21731 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 52 3.60285 0.16279 3.32602 2.44128 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 53 3.63347 0.16064 3.34029 2.44703 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 54 3.64184 0.16006 3.34415 2.44858 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 55 2.85144 2.77497 3.37745 0.16753 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 56 2.85144 2.77497 3.37745 0.16753 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 57 3.15416 0.14871 3.72739 2.63869 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.03868 3.96486 3.96486 1.46634 0.26236 1.09861 0.40547 58 2.07969 1.15181 2.63029 0.71968 58 u - - : 1.38629 1.38629 1.38629 1.38629 0.16969 3.96486 1.98703 1.46634 0.26236 1.09861 0.40547 59 2.68794 3.56411 0.15041 3.13963 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.02223 3.81740 * 1.46634 0.26236 0.00000 * //