INFERNAL1/a [1.1.5 | Sep 2023] NAME GABA3 ACC RF01803 DESC Editing element of GABA-3 exon 9 STATES 166 NODES 35 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 04:03:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01803/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 52 EFFN 2.961182 CKSUM 4281774963 NULL 0.000 0.000 0.000 0.000 GA 57.00 TC 57.00 NC 56.90 EFP7GF -11.5431 0.71946 ECMLC 0.72302 -4.06956 4.06356 1600000 429554 0.002794 ECMGC 0.47125 -15.74633 -2.76972 1600000 181068 0.002209 ECMLI 0.71737 -2.67387 5.22438 1600000 346645 0.003462 ECMGI 0.51861 -11.10490 -0.14057 1600000 117906 0.003393 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 69 89 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 IL 1 1 2 1 6 1 9 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 9 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 54 A U - - MP 3 2 3 7 6 2 12 69 89 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -3.456 0.964 -3.580 3.014 -4.131 -4.864 -0.119 -3.794 -3.471 1.250 -4.031 -0.174 -0.338 -3.991 -1.911 -2.475 ML 4 2 3 7 6 1 6 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 2 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 8 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 8 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 53 A U - - MP 9 8 6 13 6 2 10 67 87 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -4.454 -3.334 -4.402 3.634 -5.102 -6.248 -0.756 -4.398 -4.291 0.360 -4.870 -0.718 -1.169 -5.308 -2.694 -3.214 ML 10 8 6 13 6 1 5 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 4 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 2 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 52 A U - - MP 15 14 6 19 4 2 9 65 85 -7.319 -7.526 -0.041 -5.940 -3.786 -2.702 -3.905 3.056 -4.776 -5.505 -0.491 -4.063 -3.707 1.132 -4.288 1.692 -0.700 -4.496 -2.373 -2.685 ML 16 14 6 19 4 1 4 66 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 3 65 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 1 64 84 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 6 67 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 6 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 21 20 6 23 3 1 7 63 82 -8.311 -0.016 -6.966 -2.300 -3.617 1.844 -3.001 D 22 20 6 23 3 0 1 62 81 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 5 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 24 23 3 26 5 1 7 62 81 -7.401 -0.031 -7.216 -7.428 -8.320 -2.146 -2.030 -2.906 1.764 D 25 23 3 26 5 0 1 61 80 -4.959 -0.803 -4.221 -2.596 -2.508 IL 26 26 3 26 5 1 4 62 82 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 51 g c - - MP 27 26 3 31 6 2 7 61 80 -9.260 -9.200 -0.027 -6.712 -8.256 -8.651 -1.688 -1.928 -2.176 1.141 -1.897 -2.115 1.147 -2.543 -1.159 2.271 -2.790 0.441 0.984 -2.272 -0.379 -1.389 ML 28 26 3 31 6 1 2 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 2 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 50 G C - - MP 33 32 6 37 6 2 6 59 78 -9.252 -9.192 -0.019 -7.968 -8.248 -8.643 -4.069 -2.836 -4.066 0.568 -4.578 -4.359 -0.128 -4.530 -4.058 3.404 -4.394 -0.597 -0.426 -0.412 -2.068 -3.070 ML 34 32 6 37 6 1 2 58 78 -6.364 -6.710 -1.157 -1.119 -6.560 -4.090 0.220 -0.364 -0.358 0.354 MR 35 32 6 37 6 1 2 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 3 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 49 C G - - MP 39 38 6 43 4 2 4 57 76 -7.319 -7.526 -0.041 -5.940 -5.322 -5.292 -4.875 -1.472 -3.445 -5.184 3.733 -4.333 -4.961 -1.319 -5.127 -3.261 -0.023 -5.337 -1.182 -3.778 ML 40 38 6 43 4 1 1 58 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 2 59 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 2 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 45 44 6 47 3 1 2 55 74 -8.682 -0.015 -6.999 -0.033 0.264 -0.790 0.314 D 46 44 6 47 3 0 0 53 73 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 1 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 48 - U - - MR 48 47 3 50 5 1 2 54 73 -7.401 -0.031 -7.216 -7.428 -8.320 -1.168 -0.238 -1.933 1.290 D 49 47 3 50 5 0 0 52 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 47 U A - - MP 51 50 3 55 6 2 3 53 72 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -3.703 -3.655 -3.731 -0.139 -3.057 -4.461 1.124 -3.633 -3.743 0.030 -4.221 -1.740 3.225 -3.946 -0.820 0.005 ML 52 50 3 55 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 46 A U - - MP 57 56 6 61 4 2 2 51 70 -7.319 -7.526 -0.041 -5.940 -4.454 -3.334 -4.402 3.634 -5.102 -6.248 -0.756 -4.398 -4.291 0.360 -4.870 -0.718 -1.169 -5.308 -2.694 -3.214 ML 58 56 6 61 4 1 1 51 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 51 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 50 69 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 1 53 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - U - - - ML 63 62 6 65 5 1 1 48 67 -7.401 -0.031 -7.216 -7.428 -8.320 -1.097 -0.023 -1.871 1.186 D 64 62 6 65 5 0 0 47 66 -4.959 -0.803 -4.221 -2.596 -2.508 IL 65 65 3 65 5 1 1 48 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 45 G C - - MP 66 65 3 70 6 2 2 47 66 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -4.383 -2.921 -4.404 0.539 -5.282 -4.780 -0.578 -4.806 -4.235 3.388 -4.605 1.078 -0.847 -4.276 -2.579 -3.286 ML 67 65 3 70 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 44 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 44 C G - - MP 72 71 6 76 4 2 2 45 64 -7.208 -8.454 -0.063 -4.907 -5.322 -5.292 -4.875 -1.472 -3.445 -5.184 3.733 -4.333 -4.961 -1.319 -5.127 -3.261 -0.023 -5.337 -1.182 -3.778 ML 73 71 6 76 4 1 1 45 63 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 44 63 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 42 61 -12.737 -14.007 -2.036 -0.404 IL 76 76 5 76 4 1 1 45 63 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 43 - U - - MR 78 77 6 80 5 1 1 43 62 -7.401 -0.031 -7.216 -7.428 -8.320 -2.146 -2.030 -2.906 1.764 D 79 77 6 80 5 0 0 42 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 42 c g - - MP 81 80 3 85 6 2 2 42 61 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -1.530 -1.116 -1.247 1.208 -1.725 -1.282 1.754 -1.630 -1.792 1.067 -1.476 -0.317 1.312 -1.492 0.120 -0.784 ML 82 80 3 85 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 41 A U - - MP 87 86 6 91 6 2 2 40 59 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -4.454 -3.334 -4.402 3.634 -5.102 -6.248 -0.756 -4.398 -4.291 0.360 -4.870 -0.718 -1.169 -5.308 -2.694 -3.214 ML 88 86 6 91 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 40 C G - - MP 93 92 6 97 6 2 2 38 57 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -5.322 -5.292 -4.875 -1.472 -3.445 -5.184 3.733 -4.333 -4.961 -1.319 -5.127 -3.261 -0.023 -5.337 -1.182 -3.778 ML 94 92 6 97 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 37 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 39 c g - - MP 99 98 6 103 6 2 2 36 55 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -0.752 -1.447 -1.748 1.245 -1.741 -1.932 1.412 -0.851 -1.587 1.132 -2.020 -0.203 1.342 -1.059 0.055 -0.150 ML 100 98 6 103 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 38 G C - - MP 105 104 6 109 6 2 2 34 53 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -5.418 -3.423 -5.613 -0.270 -6.176 -4.947 -1.372 -5.881 -4.741 3.765 -5.035 -1.157 -1.742 -4.903 -3.451 -4.480 ML 106 104 6 109 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 37 C G - - MP 111 110 6 115 4 2 2 32 51 -7.319 -7.526 -0.041 -5.940 -5.322 -5.292 -4.875 -1.472 -3.445 -5.184 3.733 -4.333 -4.961 -1.319 -5.127 -3.261 -0.023 -5.337 -1.182 -3.778 ML 112 110 6 115 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 34 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - C - - - ML 117 116 6 119 3 1 1 29 48 -8.682 -0.015 -6.999 -1.255 1.406 -2.230 -0.477 D 118 116 6 119 3 0 0 28 47 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 36 - u - - MR 120 119 3 122 5 1 1 28 47 -7.401 -0.031 -7.216 -7.428 -8.320 0.321 -0.399 -0.716 0.468 D 121 119 3 122 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 35 A U - - MP 123 122 3 127 6 2 2 27 46 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -4.454 -3.334 -4.402 3.634 -5.102 -6.248 -0.756 -4.398 -4.291 0.360 -4.870 -0.718 -1.169 -5.308 -2.694 -3.214 ML 124 122 3 127 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 34 U A - - MP 129 128 6 133 6 2 2 25 44 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -5.078 -4.916 -4.812 -1.159 -3.584 -5.292 0.753 -4.334 -4.811 -1.010 -5.139 -2.788 3.628 -5.187 -1.240 -3.524 ML 130 128 6 133 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 33 G C - - MP 135 134 6 139 6 2 2 23 42 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -4.400 -2.930 -4.422 0.525 -5.300 -4.779 -0.591 -4.826 -4.246 3.401 -4.614 1.034 -0.861 -4.284 -2.594 -3.305 ML 136 134 6 139 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 32 G U - - MP 141 140 6 145 6 2 2 21 40 -9.260 -9.200 -0.019 -7.976 -8.256 -8.651 -4.063 -2.734 -4.255 0.819 -5.318 -6.106 -0.858 -4.235 -3.831 0.752 -4.385 3.431 -1.195 -5.167 -2.794 -2.886 ML 142 140 6 145 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 31 A U - - MP 147 146 6 151 4 2 2 19 38 -7.319 -7.526 -0.041 -5.940 -4.454 -3.334 -4.402 3.634 -5.102 -6.248 -0.756 -4.398 -4.291 0.360 -4.870 -0.718 -1.169 -5.308 -2.694 -3.214 ML 148 146 6 151 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - C - - - ML 153 152 6 155 3 1 1 16 34 -8.311 -0.016 -6.966 -1.133 1.021 -1.979 0.334 D 154 152 6 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - U - - - ML 156 155 3 158 3 1 1 15 33 -8.311 -0.016 -6.966 -2.146 -2.030 -2.906 1.764 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - G - - - ML 159 158 3 161 3 1 1 13 31 -8.311 -0.016 -6.966 -2.300 -3.617 1.844 -3.001 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - G - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 -2.300 -3.617 1.844 -3.001 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME GABA3 ACC RF01803 DESC Editing element of GABA-3 exon 9 LENG 54 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 04:03:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01803/CM NSEQ 52 EFFN 4.300537 CKSUM 4281774963 STATS LOCAL MSV -7.6451 0.71946 STATS LOCAL VITERBI -8.1822 0.71946 STATS LOCAL FORWARD -4.1435 0.71946 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.60215 1.50032 1.31537 1.18057 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 0.00000 * 1 0.26246 3.31975 1.90300 3.08868 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 2 0.13656 3.75969 2.54778 3.64572 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 3 0.50371 3.51792 1.11663 3.25263 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 4 3.42921 4.38824 0.06641 3.94145 4 G - - - 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 5 3.33324 3.18149 3.87108 0.10318 5 U - - - 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 6 1.72886 1.79689 0.75615 1.67541 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 7 2.48700 3.12220 0.26751 2.23028 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 8 3.96063 0.10974 3.84044 2.75834 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 9 1.43996 1.14822 1.97386 1.18109 9 c - - - 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 10 3.00525 2.11576 2.80667 0.26198 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 11 0.13795 3.74397 2.54384 3.62568 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 12 2.41522 1.38623 2.96516 0.49580 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 13 2.46905 3.35931 0.17414 3.20896 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 14 4.01243 0.10725 3.87000 2.76855 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 15 1.51136 1.24676 1.52248 1.29541 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 16 0.13894 3.73280 2.54102 3.61151 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 17 3.98911 0.10835 3.85678 2.76401 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 18 1.47886 1.45005 1.49556 1.16021 18 u - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 19 3.08128 3.96303 0.08887 3.90549 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 20 3.98982 0.10832 3.85718 2.76414 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 21 2.51308 0.32277 3.25641 1.85588 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 22 0.13787 3.74487 2.54407 3.62683 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 23 3.93538 2.67121 3.77892 0.11828 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 24 2.47676 3.36378 0.17297 3.21339 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 25 2.30169 3.60350 0.17491 3.40672 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 26 0.13839 3.73897 2.54258 3.61933 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 27 2.43882 0.58773 3.05903 1.17049 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 28 3.33324 3.18149 3.87108 0.10318 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 29 3.42921 4.38824 0.06641 3.94145 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 30 3.42921 4.38824 0.06641 3.94145 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 31 3.83210 2.91944 3.54424 0.11039 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 32 3.60180 2.49670 3.38779 0.15480 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 33 3.43907 0.34847 3.18343 1.51097 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 34 0.13410 3.98371 2.50610 3.67704 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 35 3.86567 2.92551 3.56001 0.10873 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 36 1.14978 1.68193 1.91372 1.05054 36 u - - - 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 37 3.04385 4.01952 0.09285 3.76997 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 38 4.05873 0.10750 3.81987 2.76901 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 39 1.45117 1.55903 1.37127 1.19872 39 u - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 40 3.04821 4.02682 0.09227 3.77796 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 41 3.84129 2.92112 3.54859 0.10993 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 42 1.58893 1.55019 1.08573 1.40245 42 g - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 43 3.33324 3.18149 3.87108 0.10318 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 44 3.04590 4.02295 0.09258 3.77372 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 45 3.41751 0.35887 3.16793 1.48435 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 46 3.85271 2.92319 3.55395 0.10936 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 47 0.39840 2.99985 1.94995 1.99118 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 48 2.47908 1.56448 3.01901 0.41835 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 49 3.04641 4.02380 0.09251 3.77465 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04381 4.20239 3.57888 1.46634 0.26236 1.09861 0.40547 50 3.26405 0.22146 2.96798 2.21631 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03078 4.18936 4.18936 1.46634 0.26236 0.72857 0.65894 51 1.71626 0.97290 1.67603 1.36586 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 52 3.45573 2.27866 3.29863 0.18744 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 53 3.87802 2.92771 3.56574 0.10813 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03038 4.20239 4.20239 1.46634 0.26236 1.09861 0.40547 54 3.30810 1.35385 3.10485 0.41500 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.01530 4.18732 * 1.46634 0.26236 0.00000 * //