# STOCKHOLM 1.0
#=GF ID fstAT
#=GF AC RF01797
#=GF DE Fst antitoxin sRNA
#=GF AU Moore B; 0000-0002-4074-1933
#=GF GA 72.0
#=GF NC 70.3
#=GF TC 72.7
#=GF SE Predicted; Mafft;
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; antitoxin;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.77 -Z 2958934 CM SEQDB
#=GF DR SO; 0000644; antisense_RNA;
#=GF DR GO; 0003729; mRNA binding;
#=GF RN [1]
#=GF RM 20156992
#=GF RT Abundance of type I toxin-antitoxin systems in bacteria: searches for new
#=GF RT candidates and discovery of novel families.
#=GF RA Fozo EM, Makarova KS, Shabalina SA, Yutin N, Koonin EV, Storz G
#=GF RL Nucleic Acids Res. 2010;38:3743-3759.
#=GF CC It is located on the opposite strand of SprA1 sRNA (PMID: 22198463).
#=GF WK Par_stability_determinant
#=GF SQ 22

AE015929.1/2256502-2256404 GCGAGUAGUGAGGGGAUUUUUGUUGGUG-U-GGCUAUAU--GUCACCUAU--UAAUUAUUUGUUGCGUUU---AUUAAGCCAAUGAGUAAAAAACGCAAUGGCACAGC
AP008934.1/2506940-2507035 UGCGGUAGUGAGGGGAUUUUU--UGAUG-C-GUCUUAAC--GUCGCCU------UCUAUUUAUUGCGUUUACUACUAAGCCAAUAAGUAAAAUACGCAACUGCACAGC
DQ008307.1/40-135          UGCGGUAGUGAGGGGAUUUUU--UGAUG-C-GACUUAAC--GUCGCCU------UCUAUUUAUUGCGUUUACUACUAAGCCAGUAAGUAAAAUACGCAACUGCACAGC
ACHE01000086.1/1746-1838   UGCAGUAGUGAGGGGAUUUUU-UAGGUG-U-GGCUAUA---GUCGCCU------AUUUAUUGUUGCGAUU---ACGUAGCCAAUGCGUAAAUAACGCAACAAUACAAC
ACJB01000054.1/75997-75903 UGUGGUAGUGAGGGGAUUUU---UGAUG-C-GGCUUAAC--GUCGCCU------UCUAUUUAUUACGUUUACUACUAAGCCAGUAAGUAAAAUACGCAACUGCACAGC
AP006716.1/2623440-2623538 CGCAAUAGUGAGGGGAUUUUU--AGGUG-C-UGGCUAAU--AUCGCCUAUUUUUUCUUAUUGUUACGUGU---ACGUAGCCAAUACGUAAAUAACGCAACAAUACAAC
ACFR01000012.1/63973-63880 CGCAAUAGUGAGGGGAUUUUUGUUGGUG-U-GGCUAUAU--GUCACCU------AUU-UUUAUUGCGUUU---ACUUAGCCAAUGAGUAAAAAACGCAAUGGCACAGC
ABSA01000004.1/2717-2811   UGCGGUAGUGAGGGGAUUUUUAUUGGUG-C-GGCUAUAU--GUCACCU------AUUUUGUAUUGCGUCU---ACUUAGCCAAUAAGAAAAAAACGCAAUGGCACAGC
ACJC01000084.1/1214-1308   UGUGGUAGUGAGGGGAUUUU---UGAUG-C-GGCUUAAC--GUCGCCU------UCUAUUUAUUGCGUUUACUAUUAAGCCAGUAAGUAAAGUACGCAACUGCACAGC
CABA01000077.1/143-235     UGCCGUAGUGAGGGGAUUUUU-UAGGUG-U-GACUAUA---GUCGCCU------AUUUAUCGUUGCGAUU---GCGUAGCCAAUGCGUAAAUAACGCAACAAUACAAC
CP000737.1/18464-18372     GGCAAUAGUGAGGGGAUUUUU-UAGGUG-U-GGCUAUG---GUCGCCU------AUUUAUUAUUGCGAUU---ACGUAGCCAAUGCGUAAAUAACGCAAUAAUACAAC
AJ938182.1/1418444-1418344 UGCAGUAGUGUGGGGAUUUUU-UCGAUGCU-GGCUUAUAAAGUCACCUAU--UAAUUAUUUGUUGCGUUU---ACUAAGCCAAUAAGUAUAAUACGCAACAGCACAGC
ACLP01000034.1/9958-9861   GGAAGUAGUGAGGGGAUUUUU--AGGUG-U-GACUAUA---GUCGCCUAUUUUUUCUUAUCGUUGCGAUU---GCGUAGCCAAUGCGCAAAUAAUGCGACGAUACAAC
DQ008306.1/31-129          UCCGAUAGUGAGGGGAUUUUU-UAGGUG-U-GGCUAUA---GUCGCCUAUUUUUUCUUAUCGUUUCGAUU---GCGUAGCCAAUGCGCAAAUAAUGCGACGAUACAGC
AM180066.1/444-354         UGCGGUAGCGAGGGAAUUUUU-UUGGUG-U-UACUA-----GUCGCCU------AUUUAUCAUUGCGUUU---GCGUAGUCAUUUCGCAGAUAAAGCAACGACGCAAC
DQ390456.1/47560-47471     GGCCGUAGUAAGGGGAUUUUU--UGGUG-U-GACUA-----GUCGCCU------AUUCGUCAUUACGCUU---GCGUAGCCAAUGCGCAAAUAUCGCAACGAGACAAC
CP000703.1/2592789-2592885 UGCCAUAGUGAGGGGAUUUAUUUAGGUGUU-GGUUAUUU--GUCACCU-----UUUUUAUUGUUGCGCGU---UCGUAACCAAUGUGCAAAAAACGCAACAAGACAGC
CP000029.1/586820-586729   UGCAAUAGUGUGGGGAUUUUU--AUGUG-U-GUCUAUG---GUUGCCU------AUUUAUUAUUGCAAUU---ACAUAUCCAAUGAGUAAAUAAUGCAAUAAUACAAC
EU366902.1/26166-26075     GGAAAUAGUGAGGGGAUUUUU--UGGUG-C-AGCU--AU--GUCGCCU-----UAUUAUUUGUUACGAUU---GUUUAGCCAAAACGUGAAAAUCGCAACAAUGCAUC
AP009351.1/2659412-2659323 CGCAAUAGUGAGGGGAUUUUUUUCGGUG-U-AGCU--AG--GUCGCCU------AUUUAUCAUCGUGUUU---GCGUAGCCAAUGCGUA---AACACAGUACCACUAA
GQ900478.1/17160-17260     UGCAGUAGUGUGGGGAUUUUU-UCGAUG-CUGGCUUAUAAAGUCGCCUAU--UAAUUAUUUGUUGCGUUU---ACUAAGCCAAUAAGUAUAAUACGCAACAGCACAGC
AB125341.3/7709-7616       GCAAAUAGUGAGGGGAUUUUUGUAGGUG-U-GGCUAUU---GUCGCCU------AUUUUUCCUUGCGAUU---ACGCAGCCAAUGCGUAAAUAACGCAAUAAUACAAC
#=GC SS_cons               :::::::(((,,,,,,,,,,,.,,,,,<.<.<<<_____..>>>>>,,......,,,,,,,<<<<<<<--...<<<_________>>>----->>>>>>>,,))):::
#=GC RF                    uGcaaUAGugAGGGGAUUUUU.UuGGUG.c.ggcUauau..gucgCCU......aUUuaUugUuGCGuUU...gCguAGCCAAUgcGcAAAuAaCGCaAcaacaCAaC
//
