INFERNAL1/a [1.1.5 | Sep 2023] NAME FourU ACC RF01795 DESC FourU thermometer RNA element STATES 204 NODES 50 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 03:47:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF01795/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.620117 CKSUM 4134542594 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 64.80 NC 39.60 EFP7GF -9.3434 0.71917 ECMLC 0.63405 -8.23226 1.58786 1600000 607163 0.001976 ECMGC 0.39889 -16.66703 -2.71670 1600000 104409 0.003831 ECMLI 0.56371 -7.25770 2.82796 1600000 353448 0.003395 ECMGI 0.45599 -10.98403 0.54250 1600000 76683 0.005216 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 81 101 -6.743 -7.988 -0.088 -4.442 IL 1 1 2 1 4 1 17 82 102 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 65 - C - - MR 3 2 3 5 3 1 17 81 101 -8.240 -0.020 -6.558 -1.448 1.534 -2.260 -0.922 D 4 2 3 5 3 0 14 79 99 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 17 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 64 - A - - MR 6 5 3 8 3 1 16 80 100 -8.240 -0.020 -6.558 1.660 -2.126 -1.782 -1.645 D 7 5 3 8 3 0 13 78 98 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 16 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 63 - C - - MR 9 8 3 11 3 1 15 79 99 -8.240 -0.020 -6.558 -1.448 1.534 -2.260 -0.922 D 10 8 3 11 3 0 12 77 97 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 15 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 62 - G - - MR 12 11 3 14 3 1 15 78 98 -8.240 -0.020 -6.558 -1.318 -2.495 1.655 -1.880 D 13 11 3 14 3 0 12 76 96 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 15 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 61 - G - - MR 15 14 3 17 3 1 14 77 97 -8.240 -0.020 -6.558 -1.318 -2.495 1.655 -1.880 D 16 14 3 17 3 0 11 75 95 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 14 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 60 - U - - MR 18 17 3 20 3 1 13 76 96 -8.240 -0.020 -6.558 -1.263 -1.299 -1.984 1.548 D 19 17 3 20 3 0 10 74 94 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 13 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - A - - MR 21 20 3 23 3 1 12 75 95 -8.240 -0.020 -6.558 1.660 -2.126 -1.782 -1.645 D 22 20 3 23 3 0 10 74 93 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 12 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 58 - g - - MR 24 23 3 26 2 1 11 74 94 -8.208 -0.005 -0.357 -1.021 0.679 0.171 D 25 23 3 26 2 0 10 73 93 -4.432 -0.068 IR 26 26 3 26 2 1 11 75 95 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 27 26 3 28 84 0 10 73 93 [ BEGL 10 ] - - - - - - S 28 27 1 29 4 0 0 32 51 -0.047 -6.768 -6.175 -6.815 [ MATP 11 ] 1 18 G C - - MP 29 28 1 33 6 2 2 32 51 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 30 28 1 33 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 1 33 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 1 33 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 2 17 G C - - MP 35 34 6 39 4 2 2 30 49 -6.815 -7.022 -0.058 -5.436 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 36 34 6 39 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 38 34 6 39 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 39 39 5 39 4 1 1 32 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 40 40 6 40 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 3 - A - - - ML 41 40 6 43 5 1 1 28 46 -6.987 -0.042 -6.802 -7.015 -7.906 1.660 -2.126 -1.782 -1.645 D 42 40 6 43 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 43 43 3 43 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 4 16 C G - - MP 44 43 3 48 6 2 2 27 45 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.305 -4.187 -4.035 -0.443 -2.809 -4.478 3.467 -3.594 -4.077 -0.165 -4.363 -2.132 0.728 -4.389 -0.511 -2.925 ML 45 43 3 48 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 3 48 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 3 48 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 5 15 A U - - MP 50 49 6 54 6 2 2 25 43 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 51 49 6 54 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 6 14 A U - - MP 56 55 6 60 6 2 2 23 41 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 57 55 6 60 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 7 13 G C - - MP 62 61 6 66 6 2 2 21 39 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 63 61 6 66 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 8 12 C G - - MP 68 67 6 72 4 2 2 19 37 -6.815 -7.022 -0.058 -5.436 -4.305 -4.187 -4.035 -0.443 -2.809 -4.478 3.467 -3.594 -4.077 -0.165 -4.363 -2.132 0.728 -4.389 -0.511 -2.925 ML 69 67 6 72 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 71 67 6 72 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 72 72 5 72 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 73 73 6 73 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 9 - A - - - ML 74 73 6 76 3 1 1 15 33 -7.842 -0.022 -6.496 1.660 -2.126 -1.782 -1.645 D 75 73 6 76 3 0 0 15 33 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 10 - A - - - ML 77 76 3 79 3 1 1 13 32 -7.842 -0.022 -6.496 1.660 -2.126 -1.782 -1.645 D 78 76 3 79 3 0 0 13 32 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 11 - U - - - ML 80 79 3 82 2 1 1 1 1 * 0.000 -1.263 -1.299 -1.984 1.548 D 81 79 3 82 2 0 0 0 0 * 0.000 IL 82 82 3 82 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 22 ] - - - - - - E 83 82 3 -1 0 0 0 0 0 [ BEGR 23 ] - - - - - - S 84 27 1 85 3 0 0 54 73 -7.842 -0.022 -6.496 IL 85 85 2 85 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - U - - - ML 86 85 2 88 3 1 1 54 73 -7.842 -0.022 -6.496 -1.263 -1.299 -1.984 1.548 D 87 85 2 88 3 0 0 53 72 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - U - - - ML 89 88 3 91 3 1 1 53 72 -7.842 -0.022 -6.496 -1.263 -1.299 -1.984 1.548 D 90 88 3 91 3 0 0 51 71 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - a - - - ML 92 91 3 94 3 1 1 52 71 -7.842 -0.022 -6.496 0.312 -0.788 -0.064 0.290 D 93 91 3 94 3 0 0 50 70 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - A - - - ML 95 94 3 97 3 1 1 51 70 -7.842 -0.022 -6.496 1.660 -2.126 -1.782 -1.645 D 96 94 3 97 3 0 0 49 69 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - U - - - ML 98 97 3 100 5 1 1 50 69 -6.987 -0.042 -6.802 -7.015 -7.906 -1.263 -1.299 -1.984 1.548 D 99 97 3 100 5 0 0 48 67 -4.959 -0.803 -4.221 -2.596 -2.508 IL 100 100 3 100 5 1 1 50 69 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 57 g u - - MP 101 100 3 105 6 2 2 49 68 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.464 -2.294 -3.617 1.223 -4.208 -4.937 0.156 -3.662 -3.323 1.563 -3.836 2.902 -0.205 -4.174 -1.785 -2.352 ML 102 100 3 105 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 3 105 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 3 105 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 56 U A - - MP 107 106 6 111 6 2 2 47 66 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 108 106 6 111 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 55 U A - - MP 113 112 6 117 6 2 2 45 64 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 114 112 6 117 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 54 g u - - MP 119 118 6 123 6 2 2 42 62 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.464 -2.294 -3.617 1.223 -4.208 -4.937 0.156 -3.662 -3.323 1.563 -3.836 2.902 -0.205 -4.174 -1.785 -2.352 ML 120 118 6 123 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 53 A U - - MP 125 124 6 129 4 2 2 40 60 -6.815 -7.022 -0.058 -5.436 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 126 124 6 129 4 1 1 41 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 4 1 1 41 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 128 124 6 129 4 0 0 40 59 -4.568 -4.250 -2.265 -0.520 IL 129 129 5 129 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 130 130 6 130 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - a - - - ML 131 130 6 133 3 1 1 38 57 -8.240 -0.020 -6.558 0.943 -1.290 0.084 -0.715 D 132 130 6 133 3 0 0 37 55 -5.620 -0.734 -1.403 IL 133 133 3 133 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 52 - G - - MR 134 133 3 136 5 1 1 37 56 -6.987 -0.042 -6.802 -7.015 -7.906 -1.318 -2.495 1.655 -1.880 D 135 133 3 136 5 0 0 35 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 136 136 3 136 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 30 51 C G - - MP 137 136 3 141 6 2 2 36 54 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.305 -4.187 -4.035 -0.443 -2.809 -4.478 3.467 -3.594 -4.077 -0.165 -4.363 -2.132 0.728 -4.389 -0.511 -2.925 ML 138 136 3 141 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 31 50 U A - - MP 143 142 6 147 6 2 2 34 52 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 144 142 6 147 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 32 49 u g - - MP 149 148 6 153 6 2 2 32 50 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.844 -3.755 -3.603 -0.114 -2.440 -4.069 1.839 -3.189 -3.641 0.122 -3.959 -1.764 1.027 -3.953 2.831 -2.525 ML 150 148 6 153 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 33 48 u g - - MP 155 154 6 159 6 2 2 30 48 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.844 -3.755 -3.603 -0.114 -2.440 -4.069 1.839 -3.189 -3.641 0.122 -3.959 -1.764 1.027 -3.953 2.831 -2.525 ML 156 154 6 159 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 34 47 U A - - MP 161 160 6 165 6 2 2 28 46 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 162 160 6 165 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 35 46 G C - - MP 167 166 6 171 6 2 2 26 44 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -4.506 -2.982 -4.586 0.355 -4.900 -4.599 -0.322 -4.809 -4.169 3.576 -4.524 -0.674 -0.714 -4.312 -2.347 -3.466 ML 168 166 6 171 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 36 45 A U - - MP 173 172 6 177 6 2 2 24 42 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 174 172 6 177 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 6 177 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 37 44 A U - - MP 179 178 6 183 6 2 2 22 40 -9.058 -8.998 -0.022 -7.774 -8.054 -8.449 -3.595 -2.679 -3.627 3.187 -3.869 -4.915 0.419 -3.681 -3.528 1.291 -4.066 -0.189 0.000 -4.135 -1.523 -2.473 ML 180 178 6 183 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 182 178 6 183 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 183 183 5 183 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 184 184 6 184 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 38 43 U A - - MP 185 184 6 189 4 2 2 20 38 -6.815 -7.022 -0.058 -5.436 -3.941 -3.757 -3.806 -0.071 -2.803 -4.392 1.519 -3.481 -3.813 0.224 -4.199 -1.663 3.194 -4.101 -0.485 -2.661 ML 186 184 6 189 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 187 184 6 189 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 188 184 6 189 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 189 189 5 189 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 190 190 6 190 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 39 - a - - - ML 191 190 6 193 3 1 1 16 35 -7.842 -0.022 -6.496 0.943 -1.290 0.084 -0.715 D 192 190 6 193 3 0 0 16 34 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 40 - g - - - ML 194 193 3 196 3 1 1 15 33 -7.842 -0.022 -6.496 0.371 -1.385 0.802 -0.786 D 195 193 3 196 3 0 0 15 33 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 41 - u - - - ML 197 196 3 199 3 1 1 13 32 -7.842 -0.022 -6.496 0.232 -0.773 -1.061 0.817 D 198 196 3 199 3 0 0 13 32 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 42 - g - - - ML 200 199 3 202 2 1 1 1 1 * 0.000 -0.357 -1.021 0.679 0.171 D 201 199 3 202 2 0 0 0 0 * 0.000 IL 202 202 3 202 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 203 202 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME FourU ACC RF01795 DESC FourU thermometer RNA element LENG 65 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 03:47:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/SO_sanity_check/RF01795/CM NSEQ 3 EFFN 2.340820 CKSUM 4134542594 STATS LOCAL MSV -7.9431 0.71917 STATS LOCAL VITERBI -8.7256 0.71917 STATS LOCAL FORWARD -3.5099 0.71917 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32927 1.67194 1.33068 1.26178 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 0.00000 * 1 2.59141 3.24725 0.16840 3.18966 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 2 2.58875 3.24409 0.16899 3.18526 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 3 0.15496 3.23919 2.96328 2.94304 3 A - - - 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 4 3.19825 0.24012 2.97167 2.10856 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 5 0.34191 2.77231 1.83165 2.70421 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 6 0.34200 2.77198 1.83159 2.70373 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 7 2.58485 3.23947 0.16987 3.17882 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 8 3.19410 0.24057 2.96970 2.10784 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 9 0.15496 3.23919 2.96328 2.94304 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 10 0.15496 3.23919 2.96328 2.94304 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 11 2.60985 2.57383 3.12725 0.21521 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 12 2.38425 3.13610 0.20805 2.95229 12 G - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 13 3.37745 0.20139 3.07243 2.28310 13 C - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 14 2.92652 2.12514 2.58215 0.28583 14 U - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 15 2.92393 2.12483 2.58117 0.28616 15 U - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 16 2.37955 3.12971 0.20942 2.94459 16 G - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 17 3.37151 0.20193 3.06980 2.28197 17 C - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 18 3.36050 0.20294 3.06491 2.27984 18 C - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 19 2.60985 2.57383 3.12725 0.21521 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 20 2.60985 2.57383 3.12725 0.21521 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 21 1.16611 2.00204 1.40297 1.17928 21 a - - - 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 22 0.15496 3.23919 2.96328 2.94304 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 23 2.60985 2.57383 3.12725 0.21521 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 24 1.92043 2.90136 0.30649 2.77286 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 25 2.97255 1.90281 2.72086 0.30944 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 26 2.97118 1.90273 2.72026 0.30960 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 27 1.91952 2.89948 0.30702 2.77039 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 28 0.34207 2.77170 1.83154 2.70333 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 29 0.67189 2.44733 1.29140 2.05692 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 30 3.19345 0.24064 2.96939 2.10773 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 31 2.96955 1.90265 2.71954 0.30980 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 32 2.94107 1.57635 2.73147 0.39254 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 33 2.94065 1.57635 2.73127 0.39259 33 U - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 34 2.96873 1.90260 2.71918 0.30990 34 U - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 35 2.58438 3.23891 0.16998 3.17805 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 36 0.34224 2.77108 1.83143 2.70243 36 A - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 37 0.34230 2.77084 1.83139 2.70209 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 38 2.96620 1.90247 2.71807 0.31020 38 U - - < 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 39 0.67189 2.44733 1.29140 2.05692 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 40 1.12753 2.52635 0.74197 2.11991 40 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 41 1.22933 2.02332 2.23417 0.75883 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 42 1.75254 2.22397 0.81842 1.28243 42 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 43 0.35195 2.90189 1.73936 2.71610 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 44 2.92774 2.12529 2.58261 0.28567 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 45 2.92852 2.12538 2.58291 0.28557 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 46 3.38079 0.20109 3.07390 2.28374 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 47 0.35156 2.90367 1.73954 2.71827 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 48 2.11913 2.90945 0.27831 2.68392 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 49 2.11979 2.91044 0.27803 2.68506 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 50 0.35090 2.90670 1.73984 2.72198 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 51 2.39057 3.14472 0.20621 2.96269 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 52 2.70022 3.57808 0.14829 3.15359 52 G - - - 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 53 2.92930 2.12548 2.58320 0.28547 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 54 2.97995 1.90789 2.69755 0.31001 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 55 0.35164 2.90329 1.73950 2.71781 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 56 0.35172 2.90293 1.73947 2.71738 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 57 2.97671 1.90771 2.69619 0.31039 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 58 1.75254 2.22397 0.81842 1.28243 58 g - - : 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 59 0.15496 3.23919 2.96328 2.94304 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 60 2.60985 2.57383 3.12725 0.21521 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 61 2.70022 3.57808 0.14829 3.15359 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 62 2.70022 3.57808 0.14829 3.15359 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 63 2.84621 0.20141 3.42224 2.38902 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 64 0.15496 3.23919 2.96328 2.94304 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.04289 3.86356 3.86356 1.46634 0.26236 1.09861 0.40547 65 2.84621 0.20141 3.42224 2.38902 65 C - - : 1.38629 1.38629 1.38629 1.38629 0.02168 3.84235 * 1.46634 0.26236 0.00000 * //