INFERNAL1/a [1.1.5 | Sep 2023] NAME ffh ACC RF01793 DESC ffh sRNA STATES 160 NODES 43 CLEN 52 W 75 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 17:46:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01793/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 89 EFFN 24.545074 CKSUM 2988352807 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -19.9742 0.72061 ECMLC 0.52770 -9.45755 2.03477 1600000 516366 0.002324 ECMGC 0.49284 -18.12150 -5.48336 1600000 202820 0.001972 ECMLI 0.55831 -6.55024 3.06877 1600000 257931 0.004652 ECMGI 0.51003 -15.43219 -3.85704 1600000 146547 0.002729 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 107 -9.840 -10.047 -0.115 -3.746 IL 1 1 2 1 4 1 8 78 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 77 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 9 75 107 -10.658 -0.003 -9.312 -0.655 -0.329 0.665 -0.025 D 4 2 3 5 3 0 1 73 105 -8.651 -1.409 -0.687 IL 5 5 3 5 3 1 6 76 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 9 74 106 -10.700 -0.003 -9.354 0.709 -0.757 -0.478 0.077 D 7 5 3 8 3 0 0 71 103 -8.093 -3.606 -0.129 IL 8 8 3 8 3 1 5 75 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 8 73 105 -10.700 -0.003 -9.354 -0.410 -0.651 0.200 0.547 D 10 8 3 11 3 0 0 70 103 -8.093 -3.606 -0.129 IL 11 11 3 11 3 1 5 74 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 1 7 72 104 -10.700 -0.058 -4.677 -0.430 0.505 0.057 -0.324 D 13 11 3 14 3 0 0 70 102 -8.093 -3.606 -0.129 IL 14 14 3 14 3 1 5 73 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 9 71 104 -10.645 -0.003 -9.299 -1.191 1.202 -0.894 -0.467 D 16 14 3 17 3 0 0 70 102 -8.782 -1.215 -0.819 IL 17 17 3 17 3 1 4 72 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 8 70 103 -10.700 -0.003 -9.354 -0.485 1.234 -2.442 -0.416 D 19 17 3 20 3 0 0 69 102 -8.093 -3.606 -0.129 IL 20 20 3 20 3 1 4 71 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - g - - - ML 21 20 3 23 3 1 7 69 102 -10.700 -0.003 -9.354 0.384 -0.345 0.571 -1.244 D 22 20 3 23 3 0 0 70 102 -8.093 -3.606 -0.129 IL 23 23 3 23 3 1 4 70 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 6 68 101 -4.711 -0.058 -9.354 -0.207 -3.714 1.463 -1.729 D 25 23 3 26 3 0 0 70 102 -2.803 -3.606 -0.369 IL 26 26 3 26 3 1 5 73 105 -0.824 -1.262 -5.771 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - G - - - ML 27 26 3 29 3 1 5 57 76 -10.713 -0.022 -6.130 0.755 -5.006 1.165 -4.717 D 28 26 3 29 3 0 0 56 74 -7.876 -3.389 -0.152 IL 29 29 3 29 3 1 3 61 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 15 - G - - - ML 30 29 3 32 3 1 5 56 75 -10.694 -0.003 -9.348 -1.665 -4.640 1.820 -3.143 D 31 29 3 32 3 0 0 55 73 -8.191 -3.704 -0.121 IL 32 32 3 32 3 1 3 60 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 16 - A - - - ML 33 32 3 35 3 1 4 55 74 -10.694 -0.003 -9.348 1.342 -4.547 0.390 -3.152 D 34 32 3 35 3 0 0 54 73 -8.191 -3.704 -0.121 IL 35 35 3 35 3 1 3 59 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 17 - U - - - ML 36 35 3 38 3 1 3 54 73 -10.694 -0.003 -9.348 -4.386 -2.255 -5.120 1.893 D 37 35 3 38 3 0 0 53 72 -8.191 -1.133 -0.887 IL 38 38 3 38 3 1 2 58 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 18 - C - - - ML 39 38 3 41 3 1 2 53 72 -10.730 -0.051 -4.871 -4.791 1.892 -2.984 -2.991 D 40 38 3 41 3 0 0 52 71 -7.503 -1.291 -0.772 IL 41 41 3 41 3 1 1 57 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 19 - G - - - ML 42 41 3 44 3 1 2 52 71 -6.525 -0.018 -9.353 0.337 -1.928 1.191 -2.390 D 43 41 3 44 3 0 0 52 71 -1.933 -1.490 -1.388 IL 44 44 3 44 3 1 1 53 72 -1.936 -0.518 -4.636 0.000 0.000 0.000 0.000 [ MATL 15 ] 21 - C - - - ML 45 44 3 47 3 1 1 51 70 -11.054 -0.052 -4.832 0.731 1.148 -4.723 -3.529 D 46 44 3 47 3 0 0 50 68 -6.190 -1.303 -0.783 IL 47 47 3 47 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 62 - G - - MR 48 47 3 50 3 1 3 50 69 -11.004 -0.003 -9.322 -1.613 -0.622 1.244 -0.611 D 49 47 3 50 3 0 0 48 67 -8.192 -1.910 -0.453 IR 50 50 3 50 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 61 - U - - MR 51 50 3 53 3 1 2 49 68 -11.021 -0.003 -9.338 -3.096 -0.484 -1.165 1.445 D 52 50 3 53 3 0 0 47 65 -7.925 -3.103 -0.185 IR 53 53 3 53 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 60 - g - - MR 54 53 3 56 3 1 1 48 67 -4.534 -0.090 -5.838 -1.046 0.060 0.418 0.185 D 55 53 3 56 3 0 0 46 64 -7.925 -3.103 -0.185 IR 56 56 3 56 3 1 1 48 67 -2.839 -0.268 -5.078 0.000 0.000 0.000 0.000 [ MATR 19 ] - 58 - U - - MR 57 56 3 59 3 1 2 47 66 -10.997 -0.003 -9.315 -0.350 -1.096 -1.795 1.299 D 58 56 3 59 3 0 0 45 64 -8.293 -1.664 -0.554 IR 59 59 3 59 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 57 - U - - MR 60 59 3 62 3 1 2 46 65 -11.021 -0.003 -9.338 -0.727 -1.651 -3.969 1.591 D 61 59 3 62 3 0 0 44 63 -7.925 -3.103 -0.185 IR 62 62 3 62 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 56 - a - - MR 63 62 3 65 3 1 2 45 64 -11.021 -0.003 -9.338 0.860 -1.528 -0.931 0.393 D 64 62 3 65 3 0 0 43 62 -7.925 -1.592 -0.591 IR 65 65 3 65 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 55 - a - - MR 66 65 3 68 3 1 1 44 63 -5.787 -0.093 -4.490 0.264 -0.451 0.172 -0.087 D 67 65 3 68 3 0 0 43 61 -7.575 -1.273 -0.783 IR 68 68 3 68 3 1 1 45 63 -2.379 -0.383 -4.618 0.000 0.000 0.000 0.000 [ MATR 23 ] - 53 - C - - MR 69 68 3 71 5 1 1 43 62 -9.647 -0.007 -9.463 -9.675 -10.566 -2.473 1.561 -3.294 -0.380 D 70 68 3 71 5 0 0 42 61 -6.766 -0.227 -4.392 -5.823 -3.817 IR 71 71 3 71 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 52 C G - - MP 72 71 3 76 6 2 2 42 61 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -8.281 -8.523 -7.337 -4.783 -5.673 -7.340 3.949 -2.490 -7.728 -4.760 -7.398 -6.877 -2.720 -8.142 -3.694 -6.531 ML 73 71 3 76 6 1 1 41 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 41 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 51 a u - - MP 78 77 6 82 6 2 2 40 59 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -6.274 -5.186 -6.245 2.779 -6.209 -7.389 2.375 -6.203 -6.142 1.735 -6.625 -2.638 -2.136 -6.679 -3.689 -4.981 ML 79 77 6 82 6 1 1 39 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 39 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 40 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 50 C G - - MP 84 83 6 88 6 2 2 38 57 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -7.544 -7.750 -6.922 -3.917 -5.304 -7.106 3.273 -6.205 -7.007 -3.846 -7.156 -5.990 1.156 -7.413 1.944 -5.802 ML 85 83 6 88 6 1 1 37 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 37 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 49 C G - - MP 90 89 6 94 6 2 2 36 55 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -7.619 -7.866 -6.964 -4.070 -5.328 -7.125 3.749 -6.237 -7.059 -4.022 -7.191 -6.191 1.006 -7.469 -1.681 -5.858 ML 91 89 6 94 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 35 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 26 48 C G - - MP 96 95 6 100 6 2 2 34 53 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -6.989 -6.340 -6.742 1.090 -5.648 -7.450 3.662 -6.240 -6.627 -0.537 -6.995 -3.847 -2.065 -7.359 -3.286 -5.490 ML 97 95 6 100 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 27 47 G C - - MP 102 101 6 106 6 2 2 32 51 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -7.719 -5.327 -8.243 1.221 -9.387 -6.872 -4.220 -8.390 -6.654 3.740 -6.957 -3.065 -4.473 -7.061 -6.400 -7.001 ML 103 101 6 106 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 46 u a - - MP 108 107 6 112 4 2 2 30 49 -6.470 -10.047 -0.022 -8.461 -5.275 -5.038 -5.281 1.976 -4.218 -6.096 1.788 -4.864 -5.169 0.137 -5.675 -2.688 2.703 -5.469 -0.923 -3.931 ML 109 107 6 112 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 31 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 30 48 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 32 51 -2.098 -2.782 -0.749 -5.267 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - C - - - ML 114 113 6 116 3 1 1 27 45 -10.764 -0.003 -9.418 -6.120 1.981 -6.572 -5.224 D 115 113 6 116 3 0 0 27 45 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - A - - - ML 117 116 3 119 3 1 1 26 44 -11.071 -0.003 -9.389 1.873 -5.279 -1.819 -5.136 D 118 116 3 119 3 0 0 25 43 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 45 - C - - MR 120 119 3 122 3 1 1 25 43 -11.071 -0.003 -9.389 -6.120 1.981 -6.572 -5.224 D 121 119 3 122 3 0 0 23 42 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 26 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 44 - C - - MR 123 122 3 125 5 1 1 24 42 -9.727 -0.006 -9.542 -9.754 -10.646 -2.604 1.808 -4.918 -1.732 D 124 122 3 125 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 32 43 G C - - MP 126 125 3 130 6 2 2 23 41 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -7.419 -5.210 -7.760 0.647 -8.944 -6.804 -3.843 -8.044 -6.564 3.758 -6.868 -0.579 -4.090 -6.860 -5.971 -6.569 ML 127 125 3 130 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 33 42 C G - - MP 132 131 6 136 6 2 2 21 39 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -9.862 -10.089 -7.931 -6.488 -6.213 -7.628 3.988 -8.613 -9.434 -6.449 -7.664 -8.520 -4.435 -9.804 -5.412 -8.232 ML 133 131 6 136 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 34 41 G C - - MP 138 137 6 142 6 2 2 19 37 -10.894 -10.834 -0.006 -9.610 -9.890 -10.285 -8.718 -5.464 -10.576 -2.892 -10.296 -6.659 -4.712 -10.202 -6.824 3.966 -7.028 -3.376 -5.077 -7.111 -7.123 -9.494 ML 139 137 6 142 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 35 40 C G - - MP 144 143 6 148 4 2 2 17 35 -9.840 -10.047 -0.007 -8.461 -6.837 -6.727 -6.499 2.271 -5.078 -6.923 3.102 -5.883 -6.486 -2.571 -6.785 -4.515 1.057 -6.877 -2.698 -5.260 ML 145 143 6 148 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - G - - - ML 150 149 6 152 3 1 1 12 31 -10.764 -0.003 -9.418 -2.153 -4.346 1.776 -1.729 D 151 149 6 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - u - - - ML 153 152 3 155 3 1 1 8 16 -2.146 -0.372 -9.418 -0.098 -2.119 0.038 0.855 D 154 152 3 155 3 0 0 6 13 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 8 15 -3.657 -0.138 -6.357 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -3.780 -2.220 -3.503 1.858 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ffh ACC RF01793 DESC ffh sRNA LENG 52 MAXL 105 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 17:46:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01793/CM NSEQ 89 EFFN 79.996246 CKSUM 2988352807 STATS LOCAL MSV -7.7342 0.72061 STATS LOCAL VITERBI -7.7671 0.72061 STATS LOCAL FORWARD -4.1663 0.72061 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.81400 1.11280 1.15504 1.64343 1.38629 1.38629 1.38629 1.38629 0.06673 6.80258 2.75763 1.46634 0.26236 0.00000 * 1 2.04299 1.59444 0.84298 1.44007 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.00237 6.73822 6.73822 1.46634 0.26236 0.76307 0.62779 2 0.84233 1.97935 1.72682 1.37323 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.00230 6.76920 6.76920 1.46634 0.26236 3.48279 0.03120 3 1.82075 1.88578 1.17650 0.97278 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.00230 6.76920 6.76920 1.46634 0.26236 3.48279 0.03120 4 1.81463 0.95303 1.28631 1.74158 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.04272 6.76920 3.20226 1.46634 0.26236 3.48279 0.03120 5 2.42616 0.48231 1.98052 1.85617 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.00239 6.72888 6.72888 1.46634 0.26236 0.63632 0.75340 6 1.74268 0.47140 3.36054 1.79515 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.00230 6.76924 6.76924 1.46634 0.26236 3.48190 0.03123 7 1.10089 1.59122 0.93102 2.66502 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.00230 6.76924 6.76924 1.46634 0.26236 1.30147 0.31763 8 1.50885 5.05561 0.35006 2.69096 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.05173 3.01035 6.77821 1.01770 0.44852 3.20565 0.04138 9 0.86754 6.27544 0.55168 6.14150 14 G - - : 1.38629 1.38629 1.38629 1.38629 0.01583 6.77821 4.22903 1.46634 0.26236 3.20565 0.04138 10 2.59072 5.82131 0.10475 3.83880 15 G - - : 1.38629 1.38629 1.38629 1.38629 0.00231 6.76469 6.76469 1.46634 0.26236 3.59644 0.02780 11 0.44651 5.89600 1.08839 3.88068 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.00231 6.76469 6.76469 1.46634 0.26236 3.59644 0.02780 12 5.81178 3.05838 6.33300 0.05312 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.00231 6.76469 6.76469 1.46634 0.26236 0.42609 1.05860 13 5.82362 0.06458 3.39343 3.65004 18 C - - : 1.38629 1.38629 1.38629 1.38629 0.02018 6.79068 3.97114 1.46634 0.26236 0.15840 1.92076 14 1.11050 2.83441 0.53921 3.55287 19 G - - : 1.38629 1.38629 1.38629 1.38629 0.01296 4.44431 6.78491 0.18253 1.79072 0.11267 2.23906 15 0.87316 0.54801 6.66653 5.80828 21 C - - : 1.38629 1.38629 1.38629 1.38629 0.00222 6.80258 6.80258 1.46634 0.26236 1.09861 0.40547 16 6.23946 0.01194 6.21620 4.83782 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 17 0.78820 1.08259 1.59428 5.63543 23 a - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 18 6.28342 0.48834 6.24188 0.96092 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 19 6.29426 0.15054 6.25142 1.99524 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 20 2.00799 0.19843 3.21722 5.17421 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 21 1.83766 6.59376 0.17680 6.50870 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 22 1.28521 1.64181 2.89130 0.74597 28 u - - < 1.38629 1.38629 1.38629 1.38629 0.01287 4.44920 6.81564 0.17810 1.81314 1.09861 0.40547 23 6.92735 0.00368 7.26987 6.21690 30 C - - - 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 24 0.07641 6.42052 2.65815 6.28735 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 25 2.28317 6.63987 0.11058 6.55976 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 26 7.43058 0.00212 7.40851 6.99598 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 27 5.54843 6.64982 0.00647 6.67743 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 28 1.13658 0.59306 6.07857 2.08617 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 29 3.10270 5.60626 0.13232 2.58574 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 30 1.51255 3.51154 1.30983 0.73411 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.27289 1.43664 6.81564 0.00920 4.69321 1.09861 0.40547 31 5.03306 3.06237 4.07774 0.07283 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 32 2.10352 6.23792 0.58960 1.13484 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 33 6.72040 0.00807 6.58534 5.21175 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 34 6.60497 7.50562 0.00228 7.90311 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 35 6.68289 0.15754 6.54077 1.94449 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 36 3.30113 0.11309 5.87985 2.69869 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 37 6.92735 0.00368 7.26987 6.21690 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 38 0.79665 2.94449 1.53096 1.27223 46 a - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 39 6.55399 0.17909 6.48309 1.82623 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 40 5.44933 3.25316 0.19683 1.99715 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 41 2.10786 6.39009 0.13402 6.09530 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 42 1.99778 6.39154 0.15031 6.09777 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 43 5.88428 1.60710 1.08029 0.78252 51 u - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 44 5.16943 6.43107 0.02688 3.95179 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04847 6.80258 3.07463 1.46634 0.26236 1.09861 0.40547 45 3.50677 0.26432 3.97135 1.69590 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.03469 3.88549 4.30094 0.10968 2.26456 0.04696 3.08177 46 1.20685 1.70607 1.20151 1.52078 55 g - - : 1.38629 1.38629 1.38629 1.38629 0.01474 6.79068 4.30417 1.46634 0.26236 2.61391 0.07607 47 0.72974 2.74937 2.12380 1.09536 56 a - - : 1.38629 1.38629 1.38629 1.38629 0.00228 6.77821 6.77821 1.46634 0.26236 3.20565 0.04138 48 1.85557 2.63804 5.39699 0.26448 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.01941 6.77821 4.01281 1.46634 0.26236 3.20565 0.04138 49 1.67296 2.25881 2.87184 0.42888 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.04968 3.05112 6.76112 0.04826 3.05528 0.91234 0.51347 50 2.46673 1.29876 1.01731 1.27046 60 g - - : 1.38629 1.38629 1.38629 1.38629 0.00228 6.77821 6.77821 1.46634 0.26236 3.20565 0.04138 51 4.88180 1.70299 2.14104 0.36709 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.01425 6.77821 4.34204 1.46634 0.26236 3.20565 0.04138 52 2.92268 1.77525 0.48157 1.83912 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.00115 6.76512 * 1.46634 0.26236 0.00000 * //