INFERNAL1/a [1.1.4 | Dec 2020] NAME ffh ACC RF01793 DESC ffh sRNA STATES 160 NODES 43 CLEN 52 W 89 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:42:38 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 89 EFFN 22.562347 CKSUM 2988352807 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.70 EFP7GF -19.7305 0.72034 ECMLC 0.53823 -9.43927 1.87550 1600000 529657 0.002266 ECMGC 0.48407 -18.48108 -5.67726 1600000 196686 0.002034 ECMLI 0.55841 -6.68728 2.93565 1600000 258761 0.004637 ECMGI 0.50158 -15.56709 -3.94007 1600000 136400 0.002933 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 89 138 -9.726 -9.933 -0.188 -3.058 IL 1 1 2 1 4 1 10 91 140 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 9 91 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 11 89 138 -10.474 -0.004 -9.128 -0.623 -0.391 0.646 0.033 D 4 2 3 5 3 0 3 87 136 -9.154 -1.629 -0.567 IL 5 5 3 5 3 1 8 90 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 10 88 137 -10.534 -0.003 -9.188 0.804 -0.842 -0.484 -0.027 D 7 5 3 8 3 0 2 85 134 -8.672 -4.185 -0.085 IL 8 8 3 8 3 1 8 89 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 9 87 136 -10.534 -0.003 -9.188 -0.126 -0.737 0.139 0.467 D 10 8 3 11 3 0 2 85 134 -8.672 -4.185 -0.085 IL 11 11 3 11 3 1 7 88 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 1 8 86 135 -10.534 -0.121 -3.644 -0.381 0.510 -0.081 -0.213 D 13 11 3 14 3 0 2 85 134 -8.672 -4.185 -0.085 IL 14 14 3 14 3 1 8 87 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 10 85 134 -10.417 -0.004 -9.071 -1.131 1.115 -0.747 -0.354 D 16 14 3 17 3 0 2 85 134 -9.488 -0.897 -1.116 IL 17 17 3 17 3 1 6 86 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 9 84 133 -10.553 -0.003 -9.207 -0.602 1.195 -2.490 -0.195 D 19 17 3 20 3 0 0 85 134 -8.471 -3.984 -0.099 IL 20 20 3 20 3 1 6 85 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 1 8 83 132 -10.553 -0.003 -9.207 0.469 -0.296 0.458 -1.222 D 22 20 3 23 3 0 0 85 134 -8.471 -3.984 -0.099 IL 23 23 3 23 3 1 6 85 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 7 82 131 -3.456 -0.141 -9.207 -0.107 -3.599 1.435 -1.811 D 25 23 3 26 3 0 0 85 134 -1.246 -3.984 -0.957 IL 26 26 3 26 3 1 7 88 137 -0.542 -1.708 -7.087 0.000 0.000 0.000 0.000 [ MATL 9 ] 14 - G - - - ML 27 26 3 29 3 1 6 58 76 -10.606 -0.019 -6.338 0.575 -4.782 1.280 -4.449 D 28 26 3 29 3 0 0 56 75 -7.688 -3.201 -0.174 IL 29 29 3 29 3 1 4 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 15 - G - - - ML 30 29 3 32 3 1 6 57 75 -10.590 -0.003 -9.244 -1.809 -4.556 1.826 -2.987 D 31 29 3 32 3 0 0 55 74 -7.971 -3.484 -0.141 IL 32 32 3 32 3 1 4 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 16 - A - - - ML 33 32 3 35 3 1 5 56 74 -10.590 -0.003 -9.244 1.438 -4.460 0.189 -3.262 D 34 32 3 35 3 0 0 54 73 -7.971 -3.484 -0.141 IL 35 35 3 35 3 1 3 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 17 - U - - - ML 36 35 3 38 3 1 4 55 73 -10.590 -0.003 -9.244 -4.316 -2.417 -5.051 1.900 D 37 35 3 38 3 0 0 53 72 -7.971 -1.152 -0.873 IL 38 38 3 38 3 1 3 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 18 - C - - - ML 39 38 3 41 3 1 3 54 72 -10.622 -0.065 -4.517 -4.740 1.900 -3.130 -3.119 D 40 38 3 41 3 0 0 53 71 -7.326 -1.354 -0.731 IL 41 41 3 41 3 1 2 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 19 - G - - - ML 42 41 3 44 3 1 2 53 71 -5.890 -0.027 -9.228 0.152 -2.048 1.302 -2.454 D 43 41 3 44 3 0 0 52 71 -1.328 -1.855 -1.620 IL 44 44 3 44 3 1 2 53 72 -2.154 -0.433 -4.854 0.000 0.000 0.000 0.000 [ MATL 15 ] 21 - C - - - ML 45 44 3 47 3 1 1 51 70 -10.944 -0.058 -4.672 0.595 1.232 -4.632 -3.327 D 46 44 3 47 3 0 0 50 69 -6.109 -1.223 -0.844 IL 47 47 3 47 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 62 - G - - MR 48 47 3 50 3 1 3 50 69 -10.889 -0.003 -9.206 -1.686 -0.688 1.301 -0.726 D 49 47 3 50 3 0 0 49 67 -8.174 -1.500 -0.637 IR 50 50 3 50 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 61 - U - - MR 51 50 3 53 3 1 2 49 68 -10.915 -0.003 -9.232 -2.732 -0.294 -0.881 1.317 D 52 50 3 53 3 0 0 47 66 -7.748 -2.926 -0.211 IR 53 53 3 53 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 60 - g - - MR 54 53 3 56 3 1 1 48 67 -3.963 -0.164 -4.531 -0.706 -0.109 0.462 0.114 D 55 53 3 56 3 0 0 46 65 -7.748 -2.926 -0.211 IR 56 56 3 56 3 1 1 49 67 -3.079 -0.223 -5.318 0.000 0.000 0.000 0.000 [ MATR 19 ] - 58 - U - - MR 57 56 3 59 3 1 2 47 66 -10.853 -0.003 -9.171 -0.446 -1.210 -1.602 1.324 D 58 56 3 59 3 0 0 46 64 -8.594 -0.952 -1.057 IR 59 59 3 59 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 57 - U - - MR 60 59 3 62 3 1 2 46 65 -10.915 -0.003 -9.232 -0.955 -1.829 -4.018 1.651 D 61 59 3 62 3 0 0 44 63 -7.748 -2.926 -0.211 IR 62 62 3 62 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 56 - a - - MR 63 62 3 65 3 1 2 45 64 -10.915 -0.003 -9.232 0.893 -1.486 -0.818 0.285 D 64 62 3 65 3 0 0 44 62 -7.748 -1.557 -0.610 IR 65 65 3 65 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 55 - a - - MR 66 65 3 68 3 1 1 44 63 -4.310 -0.156 -4.261 0.455 -0.493 0.081 -0.216 D 67 65 3 68 3 0 0 43 61 -7.411 -1.329 -0.747 IR 68 68 3 68 3 1 1 45 63 -2.904 -0.255 -5.143 0.000 0.000 0.000 0.000 [ MATR 23 ] - 53 - C - - MR 69 68 3 71 5 1 1 43 62 -9.528 -0.007 -9.343 -9.555 -10.447 -2.392 1.408 -3.264 0.072 D 70 68 3 71 5 0 0 42 61 -6.795 -0.222 -4.422 -5.853 -3.847 IR 71 71 3 71 5 1 1 44 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 52 C G - - MP 72 71 3 76 6 2 2 42 61 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -8.323 -8.562 -7.325 -4.826 -5.658 -7.303 3.953 -2.753 -7.775 -4.802 -7.358 -6.914 -2.767 -8.188 -3.742 -6.578 ML 73 71 3 76 6 1 1 41 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 41 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 42 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 51 a u - - MP 78 77 6 82 6 2 2 40 59 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -6.151 -5.157 -6.123 2.682 -5.859 -7.234 2.555 -5.996 -6.002 1.579 -6.489 -2.615 -1.806 -6.564 -3.362 -4.843 ML 79 77 6 82 6 1 1 39 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 39 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 40 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 50 C G - - MP 84 83 6 88 6 2 2 38 57 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -7.422 -7.624 -6.805 -3.786 -5.189 -6.991 3.365 -6.088 -6.888 -3.713 -7.039 -5.854 0.984 -7.293 1.783 -5.683 ML 85 83 6 88 6 1 1 37 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 37 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 38 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 49 C G - - MP 90 89 6 94 6 2 2 36 55 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -7.498 -7.739 -6.846 -3.938 -5.212 -7.010 3.746 -6.120 -6.940 -3.887 -7.075 -6.053 1.025 -7.350 -1.773 -5.738 ML 91 89 6 94 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 35 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 36 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 26 48 C G - - MP 96 95 6 100 6 2 2 34 53 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -6.741 -6.093 -6.536 1.146 -5.480 -7.294 3.619 -6.053 -6.409 -0.175 -6.802 -3.592 -1.802 -7.117 -3.097 -5.263 ML 97 95 6 100 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 27 47 G C - - MP 102 101 6 106 6 2 2 32 51 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -7.667 -5.233 -8.214 1.053 -9.308 -6.744 -4.123 -8.367 -6.566 3.765 -6.860 -2.985 -4.384 -6.948 -6.312 -6.984 ML 103 101 6 106 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 46 u a - - MP 108 107 6 112 4 2 2 30 49 -5.296 -9.933 -0.043 -8.347 -5.246 -5.009 -5.242 1.796 -4.167 -6.046 1.701 -4.818 -5.132 0.046 -5.633 -2.660 2.859 -5.435 -0.994 -3.894 ML 109 107 6 112 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 31 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 30 48 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 32 50 -2.475 -3.159 -0.539 -5.644 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - C - - - ML 114 113 6 116 3 1 1 27 45 -10.651 -0.003 -9.306 -6.000 1.980 -6.454 -5.106 D 115 113 6 116 3 0 0 27 46 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - A - - - ML 117 116 3 119 3 1 1 26 44 -10.960 -0.003 -9.278 1.862 -5.117 -1.717 -4.979 D 118 116 3 119 3 0 0 25 43 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 45 - C - - MR 120 119 3 122 3 1 1 25 43 -10.960 -0.003 -9.278 -6.000 1.980 -6.454 -5.106 D 121 119 3 122 3 0 0 23 42 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 26 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 44 - C - - MR 123 122 3 125 5 1 1 24 42 -9.617 -0.007 -9.432 -9.644 -10.536 -2.682 1.799 -4.799 -1.605 D 124 122 3 125 5 0 0 23 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 32 43 G C - - MP 126 125 3 130 6 2 2 23 41 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -7.436 -5.145 -7.831 0.461 -8.970 -6.690 -3.836 -8.099 -6.499 3.787 -6.793 -0.780 -4.090 -6.794 -5.984 -6.642 ML 127 125 3 130 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 33 42 C G - - MP 132 131 6 136 6 2 2 21 39 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -9.684 -9.909 -7.866 -6.286 -6.153 -7.587 3.986 -8.417 -9.237 -6.251 -7.623 -8.319 -4.239 -9.616 -5.215 -8.036 ML 133 131 6 136 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 34 41 G C - - MP 138 137 6 142 6 2 2 19 37 -10.802 -10.741 -0.006 -9.517 -9.797 -10.192 -8.612 -5.371 -10.428 -2.794 -10.182 -6.570 -4.611 -10.070 -6.730 3.964 -6.935 -3.281 -4.977 -7.019 -7.017 -9.336 ML 139 137 6 142 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 35 40 c g - - MP 144 143 6 148 4 2 2 17 35 -9.726 -9.933 -0.008 -8.347 -6.735 -6.613 -6.398 2.597 -4.988 -6.826 2.901 -5.789 -6.386 -2.485 -6.685 -4.401 0.958 -6.783 -2.611 -5.165 ML 145 143 6 148 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - G - - - ML 150 149 6 152 3 1 1 13 31 -10.651 -0.003 -9.306 -2.326 -4.427 1.805 -1.950 D 151 149 6 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - u - - - ML 153 152 3 155 3 1 1 8 16 -2.122 -0.380 -9.306 -0.233 -2.111 0.018 0.930 D 154 152 3 155 3 0 0 6 14 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 8 15 -3.588 -0.146 -6.288 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -3.694 -2.326 -3.579 1.864 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME ffh ACC RF01793 DESC ffh sRNA LENG 52 MAXL 106 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:42:38 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 89 EFFN 78.513275 CKSUM 2988352807 STATS LOCAL MSV -7.7296 0.72034 STATS LOCAL VITERBI -7.8178 0.72034 STATS LOCAL FORWARD -4.1880 0.72034 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.80189 1.12410 1.15238 1.63894 1.38629 1.38629 1.38629 1.38629 0.12100 6.80380 2.18163 1.46634 0.26236 0.00000 * 1 2.04715 1.64453 0.84449 1.39425 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.00250 6.68530 6.68530 1.46634 0.26236 1.02459 0.44464 2 0.76154 2.06744 1.73196 1.47138 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.00239 6.72956 6.72956 1.46634 0.26236 4.21193 0.01493 3 1.56525 1.97404 1.21502 1.03461 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.00239 6.72956 6.72956 1.46634 0.26236 4.21193 0.01493 4 1.78703 0.93949 1.38392 1.65485 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.08936 6.72956 2.47353 1.46634 0.26236 4.21193 0.01493 5 2.44949 0.52589 1.86899 1.78170 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.00261 6.64281 6.64281 1.46634 0.26236 0.50837 0.91999 6 1.84675 0.49347 3.46489 1.60709 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.00236 6.74366 6.74366 1.46634 0.26236 4.01825 0.01815 7 1.03390 1.54893 1.00337 2.72932 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.00236 6.74366 6.74366 1.46634 0.26236 0.48306 0.95944 8 1.43223 5.03343 0.36640 2.78897 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.14195 2.03103 6.78215 1.24601 0.33919 3.10469 0.04587 9 0.98633 6.22919 0.47360 6.06107 14 G - - : 1.38629 1.38629 1.38629 1.38629 0.01371 6.78215 4.38308 1.46634 0.26236 3.10469 0.04587 10 2.72232 5.82197 0.09813 3.69759 15 G - - : 1.38629 1.38629 1.38629 1.38629 0.00230 6.77073 6.77073 1.46634 0.26236 3.47554 0.03143 11 0.37648 5.88066 1.22735 4.02485 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.00230 6.77073 6.77073 1.46634 0.26236 3.47554 0.03143 12 5.82974 3.21502 6.35249 0.04587 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.00230 6.77073 6.77073 1.46634 0.26236 0.41807 1.07386 13 5.82608 0.05714 3.50519 3.79193 18 C - - : 1.38629 1.38629 1.38629 1.38629 0.01739 6.79372 4.12755 1.46634 0.26236 0.18163 1.79522 14 1.24054 2.94190 0.45891 3.64841 19 G - - : 1.38629 1.38629 1.38629 1.38629 0.01910 4.02884 6.78884 0.12210 2.16331 0.13018 2.10320 15 0.95380 0.49337 6.74763 5.81297 21 C - - : 1.38629 1.38629 1.38629 1.38629 0.00222 6.80380 6.80380 1.46634 0.26236 1.09861 0.40547 16 6.22373 0.01206 6.20278 4.83014 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 17 0.84747 0.95294 1.70320 5.57341 23 a - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 18 6.26389 0.42049 6.22316 1.08062 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 19 6.27485 0.14983 6.23241 2.00030 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 20 1.96771 0.21935 2.96504 5.18113 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 21 1.94865 6.57827 0.15707 6.50481 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 22 1.41454 1.74070 3.02369 0.62934 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.02793 3.63245 6.81564 0.08094 2.55426 1.09861 0.40547 23 6.90494 0.00376 7.24646 6.19670 30 C - - - 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 24 0.08196 6.37457 2.58952 6.24982 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 25 2.41304 6.63689 0.09679 6.57435 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 26 7.41582 0.00216 7.39601 6.97000 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 27 5.53112 6.63250 0.00658 6.65997 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 28 0.90002 0.74030 6.06754 2.17024 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 29 3.26230 5.75608 0.11138 2.74979 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 30 1.63733 3.58079 1.31727 0.67377 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.28006 1.41401 6.81564 0.00899 4.71567 1.09861 0.40547 31 5.02022 3.18244 4.19803 0.06519 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 32 2.18928 6.23109 0.73628 0.89860 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 33 6.70300 0.00821 6.56799 5.19448 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 34 6.59187 7.49462 0.00231 7.87970 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 35 6.69118 0.13610 6.54561 2.08288 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 36 3.40577 0.11636 5.84921 2.60660 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 37 6.90494 0.00376 7.24646 6.19670 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 38 0.66873 3.07979 1.63327 1.40087 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 39 6.54591 0.15932 6.47203 1.93592 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 40 5.45287 2.99517 0.21773 1.95653 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 41 2.09840 6.37122 0.13543 6.07640 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 42 2.13314 6.37317 0.13063 6.07926 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 43 5.82661 1.71729 0.95072 0.84156 51 u - - > 1.38629 1.38629 1.38629 1.38629 0.00220 6.81564 6.81564 1.46634 0.26236 1.09861 0.40547 44 5.16074 6.42007 0.02555 4.02491 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.05732 6.80380 2.90779 1.46634 0.26236 1.09861 0.40547 45 3.56506 0.36520 4.05764 1.34571 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.07124 2.86489 4.44209 0.04064 3.22317 0.03984 3.24270 46 1.04498 1.74278 1.26733 1.65189 55 a - - : 1.38629 1.38629 1.38629 1.38629 0.01384 6.79372 4.37241 1.46634 0.26236 2.48837 0.08670 47 0.69914 2.73411 2.02657 1.18336 56 a - - : 1.38629 1.38629 1.38629 1.38629 0.00227 6.78215 6.78215 1.46634 0.26236 3.10469 0.04587 48 2.01779 2.78996 5.42264 0.22163 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.04793 6.78215 3.08646 1.46634 0.26236 3.10469 0.04587 49 1.76080 2.37740 2.68810 0.40453 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.07649 2.62478 6.73660 0.03244 3.44454 0.42458 1.06145 50 2.12778 1.42173 0.97872 1.33251 60 g - - : 1.38629 1.38629 1.38629 1.38629 0.00227 6.78215 6.78215 1.46634 0.26236 3.10469 0.04587 51 4.79887 1.57545 1.93798 0.44496 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.02168 6.78215 3.89669 1.46634 0.26236 3.10469 0.04587 52 3.03989 1.81375 0.44117 1.92529 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.00116 6.76163 * 1.46634 0.26236 0.00000 * //