INFERNAL1/a [1.1.4 | Dec 2020] NAME b55 ACC RF01783 DESC Mycobacterium B11 STATES 192 NODES 45 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:42:09 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.332031 CKSUM 1929492311 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 85.30 NC 44.50 EFP7GF -6.1028 0.72420 ECMLC 0.51799 -11.09508 1.31721 1600000 743837 0.001613 ECMGC 0.39082 -16.93466 -2.15105 1600000 129201 0.003096 ECMLI 0.50021 -9.19310 2.82276 1600000 489200 0.002453 ECMGI 0.42413 -12.15355 0.76560 1600000 95877 0.004172 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 77 96 -6.680 -6.887 -0.064 -5.301 IL 1 1 2 1 4 1 15 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 13 77 96 -8.125 -0.022 -6.443 -1.163 1.422 -1.960 -0.697 D 4 2 3 5 3 0 12 76 95 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 13 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 61 - G - - MR 6 5 3 8 2 1 12 76 95 -8.055 -0.005 -1.055 -2.184 1.566 -1.568 D 7 5 3 8 2 0 11 75 95 -4.432 -0.068 IR 8 8 3 8 2 1 12 77 96 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 3 ] - - - - - - B 9 8 3 10 75 0 11 75 94 [ BEGL 4 ] - - - - - - S 10 9 1 11 4 0 0 36 55 -0.049 -6.704 -6.112 -6.752 [ MATP 5 ] 2 22 g u - - MP 11 10 1 15 6 2 2 36 55 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -3.318 -2.218 -3.457 1.297 -3.927 -4.671 0.405 -3.525 -3.210 1.756 -3.718 2.679 0.043 -3.929 -1.534 -2.229 ML 12 10 1 15 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 1 15 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 1 15 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 21 G C - - MP 17 16 6 21 6 2 2 34 53 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 18 16 6 21 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 20 G C - - MP 23 22 6 27 6 2 2 32 51 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 24 22 6 27 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 19 A U - - MP 29 28 6 33 4 2 2 30 49 -6.680 -6.887 -0.064 -5.301 -3.418 -2.552 -3.459 3.016 -3.615 -4.651 0.664 -3.521 -3.371 1.486 -3.899 -0.096 0.243 -3.899 -1.280 -2.319 ML 30 28 6 33 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 32 28 6 33 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 33 33 5 33 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 34 34 6 34 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 6 - C - - - ML 35 34 6 37 5 1 1 27 46 -6.880 -0.045 -6.696 -6.908 -7.799 -1.163 1.422 -1.960 -0.697 D 36 34 6 37 5 0 0 26 44 -4.959 -0.803 -4.221 -2.596 -2.508 IL 37 37 3 37 5 1 1 27 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 18 U A - - MP 38 37 3 42 6 2 2 26 45 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -3.716 -3.518 -3.603 0.148 -2.655 -4.209 1.660 -3.314 -3.615 0.490 -4.010 -1.430 3.039 -3.882 -0.343 -2.480 ML 39 37 3 42 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 3 42 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 3 42 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 17 C G - - MP 44 43 6 48 6 2 2 24 43 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 45 43 6 48 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 16 C G - - MP 50 49 6 54 6 2 2 22 41 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 51 49 6 54 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 15 U A - - MP 56 55 6 60 4 2 2 20 39 -6.680 -6.887 -0.064 -5.301 -3.716 -3.518 -3.603 0.148 -2.655 -4.209 1.660 -3.314 -3.615 0.490 -4.010 -1.430 3.039 -3.882 -0.343 -2.480 ML 57 55 6 60 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 59 55 6 60 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 60 60 5 60 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 61 61 6 61 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - G - - - ML 62 61 6 64 3 1 1 16 35 -7.717 -0.024 -6.371 -1.055 -2.184 1.566 -1.568 D 63 61 6 64 3 0 0 16 34 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - A - - - ML 65 64 3 67 3 1 1 15 33 -7.717 -0.024 -6.371 1.588 -1.881 -1.562 -1.379 D 66 64 3 67 3 0 0 15 33 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - G - - - ML 68 67 3 70 3 1 1 13 32 -7.717 -0.024 -6.371 -1.055 -2.184 1.566 -1.568 D 69 67 3 70 3 0 0 13 32 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - A - - - ML 71 70 3 73 2 1 1 1 1 * 0.000 1.588 -1.881 -1.562 -1.379 D 72 70 3 73 2 0 0 0 0 * 0.000 IL 73 73 3 73 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 18 ] - - - - - - E 74 73 3 -1 0 0 0 0 0 [ BEGR 19 ] - - - - - - S 75 9 1 76 3 0 0 52 71 -7.717 -0.024 -6.371 IL 76 76 2 76 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 23 - G - - - ML 77 76 2 79 3 1 1 52 71 -7.717 -0.024 -6.371 -1.055 -2.184 1.566 -1.568 D 78 76 2 79 3 0 0 51 70 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 24 - U - - - ML 80 79 3 82 3 1 1 51 70 -7.717 -0.024 -6.371 -1.045 -1.122 -1.751 1.464 D 81 79 3 82 3 0 0 50 69 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 25 - A - - - ML 83 82 3 85 3 1 1 50 69 -7.717 -0.024 -6.371 1.588 -1.881 -1.562 -1.379 D 84 82 3 85 3 0 0 49 68 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - G - - - ML 86 85 3 88 5 1 1 49 68 -6.880 -0.045 -6.696 -6.908 -7.799 -1.055 -2.184 1.566 -1.568 D 87 85 3 88 5 0 0 48 66 -4.959 -0.803 -4.221 -2.596 -2.508 IL 88 88 3 88 5 1 1 49 68 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 27 60 G C - - MP 89 88 3 93 6 2 2 48 67 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 90 88 3 93 6 1 1 47 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 3 93 6 1 1 47 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 3 93 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 28 59 C G - - MP 95 94 6 99 4 2 2 46 65 -6.620 -7.865 -0.096 -4.319 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 96 94 6 99 4 1 1 45 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 45 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 99 99 5 99 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 58 - U - - MR 101 100 6 103 5 1 1 44 63 -6.880 -0.045 -6.696 -6.908 -7.799 -1.045 -1.122 -1.751 1.464 D 102 100 6 103 5 0 0 43 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 103 103 3 103 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 29 57 C G - - MP 104 103 3 108 6 2 2 43 62 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 105 103 3 108 6 1 1 42 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 3 108 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 3 108 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 43 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 30 56 G C - - MP 110 109 6 114 4 2 2 41 60 -6.620 -7.865 -0.096 -4.319 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 111 109 6 114 4 1 1 40 59 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 4 1 1 40 59 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 113 109 6 114 4 0 0 38 57 -12.737 -14.007 -2.036 -0.404 IL 114 114 5 114 4 1 1 40 59 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 115 115 6 115 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 55 - A - - MR 116 115 6 118 5 1 1 39 58 -6.880 -0.045 -6.696 -6.908 -7.799 1.588 -1.881 -1.562 -1.379 D 117 115 6 118 5 0 0 38 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 118 118 3 118 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 31 54 C G - - MP 119 118 3 123 6 2 2 38 57 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 120 118 3 123 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 3 123 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 3 123 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 32 53 A U - - MP 125 124 6 129 6 2 2 36 55 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -3.418 -2.552 -3.459 3.016 -3.615 -4.651 0.664 -3.521 -3.371 1.486 -3.899 -0.096 0.243 -3.899 -1.280 -2.319 ML 126 124 6 129 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 52 G C - - MP 131 130 6 135 6 2 2 34 53 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.264 -2.869 -4.331 0.508 -4.559 -4.497 -0.039 -4.530 -3.998 3.499 -4.372 -0.556 -0.439 -4.150 -2.053 -3.216 ML 132 130 6 135 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 51 C G - - MP 137 136 6 141 6 2 2 32 51 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 138 136 6 141 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 50 C G - - MP 143 142 6 147 6 2 2 30 49 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 144 142 6 147 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 49 C G - - MP 149 148 6 153 6 2 2 28 47 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 150 148 6 153 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 37 48 C G - - MP 155 154 6 159 6 2 2 26 45 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 156 154 6 159 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 38 47 A U - - MP 161 160 6 165 6 2 2 24 43 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -3.418 -2.552 -3.459 3.016 -3.615 -4.651 0.664 -3.521 -3.371 1.486 -3.899 -0.096 0.243 -3.899 -1.280 -2.319 ML 162 160 6 165 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 39 46 C G - - MP 167 166 6 171 6 2 2 22 41 -9.011 -8.950 -0.023 -7.727 -8.006 -8.402 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 168 166 6 171 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 40 45 C G - - MP 173 172 6 177 4 2 2 20 39 -6.680 -6.887 -0.064 -5.301 -4.066 -3.923 -3.834 -0.206 -2.669 -4.307 3.367 -3.428 -3.871 0.119 -4.179 -1.866 0.888 -4.165 -0.368 -2.729 ML 174 172 6 177 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 6 177 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - C - - - ML 179 178 6 181 3 1 1 16 35 -7.717 -0.024 -6.371 -1.163 1.422 -1.960 -0.697 D 180 178 6 181 3 0 0 16 34 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - A - - - ML 182 181 3 184 3 1 1 15 33 -7.717 -0.024 -6.371 1.588 -1.881 -1.562 -1.379 D 183 181 3 184 3 0 0 15 33 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - C - - - ML 185 184 3 187 3 1 1 13 32 -7.717 -0.024 -6.371 -1.163 1.422 -1.960 -0.697 D 186 184 3 187 3 0 0 13 32 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - G - - - ML 188 187 3 190 2 1 1 1 1 * 0.000 -1.055 -2.184 1.566 -1.568 D 189 187 3 190 2 0 0 0 0 * 0.000 IL 190 190 3 190 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 191 190 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME b55 ACC RF01783 DESC Mycobacterium B11 LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:42:09 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 2 EFFN 1.675781 CKSUM 1929492311 STATS LOCAL MSV -7.7375 0.72420 STATS LOCAL VITERBI -9.1669 0.72420 STATS LOCAL FORWARD -3.3236 0.72420 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.64738 1.24247 1.08705 1.70615 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.42703 0.31008 2.99175 2.05485 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.77860 2.54483 0.40712 2.44100 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.36815 2.87720 0.23473 2.82570 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.36694 2.87600 0.23509 2.82396 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.51513 2.37770 1.55110 2.32486 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.42703 0.31008 2.99175 2.05485 6 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.61109 1.64662 2.31658 0.45376 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.85275 0.34239 2.58070 1.85454 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.85293 0.34237 2.58077 1.85457 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.61194 1.64662 2.31689 0.45361 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.33384 3.15543 0.22915 2.72951 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.22741 2.89116 2.65002 2.56078 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.33384 3.15543 0.22915 2.72951 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.22741 2.89116 2.65002 2.56078 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.51681 2.49318 1.48327 2.36406 15 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.12647 2.74488 0.29744 2.60681 16 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.12499 2.74316 0.29805 2.60454 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.51820 2.48920 1.48337 2.35852 18 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.55412 1.80649 2.19249 0.43638 19 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 3.03446 0.27622 2.70259 2.06973 20 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 3.03032 0.27676 2.70094 2.06892 21 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.64531 1.62073 2.34416 0.45360 22 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.33384 3.15543 0.22915 2.72951 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.28984 2.30985 2.79137 0.30367 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.22741 2.89116 2.65002 2.56078 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.33384 3.15543 0.22915 2.72951 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.36611 2.87519 0.23533 2.82278 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.85540 0.34197 2.58179 1.85495 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.82873 0.34627 2.57073 1.85082 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.35843 2.86765 0.23762 2.81181 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.82593 0.34672 2.56956 1.85038 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.51675 2.37397 1.55098 2.31880 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.36085 2.87003 0.23690 2.81526 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.84806 0.34314 2.57876 1.85382 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.84929 0.34294 2.57927 1.85401 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.84976 0.34287 2.57947 1.85408 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.84989 0.34285 2.57952 1.85410 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.51565 2.37649 1.55106 2.32289 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.84978 0.34287 2.57947 1.85409 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.84969 0.34288 2.57943 1.85407 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.42703 0.31008 2.99175 2.05485 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.22741 2.89116 2.65002 2.56078 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.42703 0.31008 2.99175 2.05485 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.33384 3.15543 0.22915 2.72951 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.12687 2.74534 0.29728 2.60742 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.12693 2.74541 0.29725 2.60751 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.55257 1.80641 2.19201 0.43667 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.12710 2.74561 0.29718 2.60777 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.12722 2.74574 0.29713 2.60795 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.12735 2.74589 0.29708 2.60816 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.12752 2.74608 0.29701 2.60841 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.03565 0.27606 2.70306 2.06996 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.55427 1.80650 2.19253 0.43635 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.12818 2.74685 0.29674 2.60942 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.22741 2.89116 2.65002 2.56078 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.03744 0.27583 2.70377 2.07031 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.12857 2.74730 0.29658 2.61002 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.28984 2.30985 2.79137 0.30367 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.12767 2.74627 0.29695 2.60865 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 3.03095 0.27668 2.70119 2.06904 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.33384 3.15543 0.22915 2.72951 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //