INFERNAL1/a [1.1.4 | Dec 2020] NAME rimP ACC RF01770 DESC Gammaprotebacteria rimP leader STATES 342 NODES 104 CLEN 111 W 244 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:41:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 46 EFFN 2.597046 CKSUM 13062046 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.50 NC 46.50 EFP7GF -8.5449 0.71841 ECMLC 0.56000 -9.89251 0.69234 1600000 450280 0.002665 ECMGC 0.38947 -14.04693 -3.78002 1600000 21809 0.018341 ECMLI 0.47074 -8.55631 3.07643 1600000 286659 0.004186 ECMGI 0.43219 -7.46141 1.80847 1600000 21979 0.018199 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 244 412 -7.198 -7.405 -0.045 -5.820 IL 1 1 2 1 4 21 56 246 415 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 20 56 246 414 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 21 55 244 413 -8.198 -0.018 -6.852 0.309 -0.543 0.131 -0.029 D 4 2 3 5 3 16 51 242 410 -6.174 -1.687 -0.566 IL 5 5 3 5 3 20 55 245 413 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 20 54 243 412 -8.198 -0.018 -6.852 0.114 -0.555 0.352 -0.058 D 7 5 3 8 3 15 50 241 409 -6.174 -1.687 -0.566 IL 8 8 3 8 3 19 54 244 412 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 19 54 242 411 -8.198 -0.018 -6.852 -0.153 0.472 -0.896 0.235 D 10 8 3 11 3 15 49 240 408 -6.174 -1.687 -0.566 IL 11 11 3 11 3 18 53 243 411 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 19 53 241 410 -8.198 -0.018 -6.852 -0.040 -0.352 -0.150 0.425 D 13 11 3 14 3 14 49 239 407 -6.174 -1.687 -0.566 IL 14 14 3 14 3 18 52 242 410 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 18 52 240 409 -8.198 -0.018 -6.852 0.454 -0.384 0.019 -0.234 D 16 14 3 17 3 14 48 238 406 -6.174 -1.687 -0.566 IL 17 17 3 17 3 17 52 241 409 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 17 51 239 408 -8.198 -0.018 -6.852 0.106 -0.192 -0.480 0.413 D 19 17 3 20 3 13 47 237 405 -6.174 -1.687 -0.566 IL 20 20 3 20 3 16 51 240 408 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - u - - - ML 21 20 3 23 3 16 50 239 407 -8.198 -0.070 -4.498 0.152 -0.240 -0.528 0.432 D 22 20 3 23 3 13 46 236 405 -6.174 -1.687 -0.566 IL 23 23 3 23 3 16 50 239 407 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 16 49 238 406 -8.146 -0.137 -3.526 0.162 0.046 -0.698 0.301 D 25 23 3 26 3 12 46 235 404 -6.646 -2.159 -0.384 IL 26 26 3 26 3 16 50 238 407 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 16 49 237 405 -8.029 -0.020 -6.683 0.195 -0.419 -0.563 0.517 D 28 26 3 29 3 12 45 235 403 -7.314 -0.775 -1.289 IL 29 29 3 29 3 15 48 237 406 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 15 48 236 404 -8.168 -0.018 -6.822 -0.383 -0.627 0.044 0.636 D 31 29 3 32 3 11 44 233 402 -6.468 -1.192 -0.860 IL 32 32 3 32 3 14 47 236 405 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - a - - - ML 33 32 3 35 3 14 47 235 403 -8.198 -0.018 -6.852 0.478 -0.141 -0.621 0.070 D 34 32 3 35 3 10 43 232 401 -6.174 -1.687 -0.566 IL 35 35 3 35 3 14 47 235 404 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - g - - - ML 36 35 3 38 3 14 46 234 402 -8.198 -0.018 -6.852 0.294 -0.968 0.584 -0.389 D 37 35 3 38 3 10 42 231 400 -6.174 -1.687 -0.566 IL 38 38 3 38 3 13 46 234 403 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - u - - - ML 39 38 3 41 3 13 45 233 401 -8.198 -0.018 -6.852 0.005 -0.220 0.046 0.145 D 40 38 3 41 3 9 41 230 399 -6.174 -1.687 -0.566 IL 41 41 3 41 3 12 45 233 402 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - u - - - ML 42 41 3 44 3 12 44 232 400 -8.198 -0.112 -3.806 -0.019 -0.184 0.028 0.155 D 43 41 3 44 3 9 40 230 398 -6.174 -1.687 -0.566 IL 44 44 3 44 3 12 44 232 401 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 45 44 3 47 3 12 44 231 399 -8.105 -0.019 -6.759 0.220 -0.622 -0.533 0.580 D 46 44 3 47 3 8 40 229 397 -6.925 -0.760 -1.317 IL 47 47 3 47 3 11 43 231 400 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - a - - - ML 48 47 3 50 3 12 43 230 398 -8.198 -0.029 -5.951 0.769 -0.818 -1.123 0.344 D 49 47 3 50 3 7 38 227 396 -6.174 -1.687 -0.566 IL 50 50 3 50 3 11 42 230 399 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 51 50 3 53 3 12 42 229 397 -8.187 -0.018 -6.841 0.188 -0.515 -1.167 0.779 D 52 50 3 53 3 7 37 226 395 -6.287 -1.464 -0.679 IL 53 53 3 53 3 10 41 229 398 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - c - - - ML 54 53 3 56 3 11 41 228 396 -8.198 -0.018 -6.852 -0.381 0.726 -1.449 0.278 D 55 53 3 56 3 6 36 225 394 -6.174 -1.687 -0.566 IL 56 56 3 56 3 10 41 228 397 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 11 40 227 395 -8.198 -0.018 -6.852 1.652 -2.113 -1.943 -1.448 D 58 56 3 59 3 6 35 224 393 -6.174 -1.687 -0.566 IL 59 59 3 59 3 9 40 227 396 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 10 39 226 394 -8.198 -0.018 -6.852 -1.356 -2.851 1.706 -2.267 D 61 59 3 62 3 5 34 223 392 -6.174 -1.687 -0.566 IL 62 62 3 62 3 9 39 226 395 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 10 39 225 393 -8.198 -0.018 -6.852 -2.072 -3.362 1.814 -2.749 D 64 62 3 65 3 5 34 222 391 -6.174 -1.687 -0.566 IL 65 65 3 65 3 8 38 225 394 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - G - - - ML 66 65 3 68 3 9 38 224 392 -8.198 -0.018 -6.852 -2.072 -3.362 1.814 -2.749 D 67 65 3 68 3 5 33 221 390 -6.174 -1.687 -0.566 IL 68 68 3 68 3 8 37 224 393 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 9 37 223 391 -8.198 -0.018 -6.852 -1.928 -1.849 -2.681 1.724 D 70 68 3 71 3 4 32 220 389 -6.174 -1.687 -0.566 IL 71 71 3 71 3 8 36 223 392 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 72 71 3 74 3 9 36 222 390 -8.198 -0.018 -6.852 -0.826 1.171 -1.823 -0.148 D 73 71 3 74 3 4 31 219 388 -6.174 -1.687 -0.566 IL 74 74 3 74 3 7 36 223 391 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 8 35 221 390 -8.198 -0.018 -6.852 -1.104 1.419 -2.145 -0.655 D 76 74 3 77 3 4 31 218 387 -6.174 -1.687 -0.566 IL 77 77 3 77 3 7 35 222 390 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 8 34 220 389 -8.198 -0.018 -6.852 1.804 -2.846 -2.432 -2.437 D 79 77 3 80 3 3 30 217 386 -6.174 -1.687 -0.566 IL 80 80 3 80 3 6 34 221 389 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 7 33 219 388 -8.198 -0.018 -6.852 -1.046 -2.623 1.637 -2.046 D 82 80 3 83 3 3 29 216 385 -6.174 -1.687 -0.566 IL 83 83 3 83 3 6 33 220 388 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - u - - - ML 84 83 3 86 3 7 32 218 387 -8.198 -0.018 -6.852 -0.327 0.308 -1.349 0.653 D 85 83 3 86 3 3 28 215 384 -6.174 -1.687 -0.566 IL 86 86 3 86 3 6 32 219 387 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - a - - - ML 87 86 3 89 3 6 31 217 386 -8.198 -0.018 -6.852 0.722 -0.787 -0.871 0.293 D 88 86 3 89 3 2 28 215 383 -6.174 -1.687 -0.566 IL 89 89 3 89 3 5 31 218 386 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - a - - - ML 90 89 3 92 3 5 30 216 385 -4.457 -0.122 -4.816 0.867 -1.059 0.034 -0.572 D 91 89 3 92 3 2 27 214 382 -6.174 -1.687 -0.566 IL 92 92 3 92 3 5 31 217 385 -1.034 -1.081 -4.688 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - c - - - ML 93 92 3 95 3 5 30 215 384 -8.159 -0.018 -6.813 -0.883 0.669 -1.690 0.639 D 94 92 3 95 3 2 27 213 381 -6.544 -2.057 -0.417 IL 95 95 3 95 3 5 30 216 384 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - A - - - ML 96 95 3 98 3 4 29 214 383 -8.159 -0.112 -3.814 1.433 -1.249 -1.502 -0.929 D 97 95 3 98 3 2 26 212 381 -6.544 -2.057 -0.417 IL 98 98 3 98 3 4 29 215 383 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - u - - - ML 99 98 3 101 3 4 28 213 382 -8.450 -0.028 -5.912 0.509 -0.889 -1.114 0.655 D 100 98 3 101 3 2 26 212 380 -6.278 -0.420 -2.061 IL 101 101 3 101 3 3 28 213 382 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 151 - U - - MR 102 101 3 104 3 4 27 212 381 -8.565 -0.016 -6.882 -1.256 -0.762 -2.001 1.455 D 103 101 3 104 3 1 24 210 378 -6.482 -1.402 -0.712 IR 104 104 3 104 3 3 27 212 381 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 150 - U - - MR 105 104 3 107 3 4 26 211 380 -8.574 -0.016 -6.892 -1.928 -1.849 -2.681 1.724 D 106 104 3 107 3 0 23 209 377 -6.390 -1.568 -0.620 IR 107 107 3 107 3 3 26 212 380 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 149 - U - - MR 108 107 3 110 3 4 25 210 379 -8.574 -0.016 -6.892 -1.928 -1.849 -2.681 1.724 D 109 107 3 110 3 0 22 208 376 -6.390 -1.568 -0.620 IR 110 110 3 110 3 3 25 211 379 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 148 - U - - MR 111 110 3 113 3 3 24 209 378 -8.574 -0.016 -6.892 -1.928 -1.849 -2.681 1.724 D 112 110 3 113 3 0 22 207 376 -6.390 -1.568 -0.620 IR 113 113 3 113 3 2 24 210 378 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 147 - U - - MR 114 113 3 116 3 3 23 208 377 -8.574 -0.016 -6.892 -1.928 -1.849 -2.681 1.724 D 115 113 3 116 3 0 21 206 375 -6.390 -1.568 -0.620 IR 116 116 3 116 3 2 23 209 377 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 146 - U - - MR 117 116 3 119 3 2 22 207 376 -8.574 -0.016 -6.892 -1.928 -1.849 -2.681 1.724 D 118 116 3 119 3 0 21 206 374 -6.390 -1.568 -0.620 IR 119 119 3 119 3 2 22 208 376 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 145 - U - - MR 120 119 3 122 2 1 21 206 375 -8.634 -0.004 -1.928 -1.849 -2.681 1.724 D 121 119 3 122 2 0 20 205 374 -4.432 -0.068 IR 122 122 3 122 2 1 22 207 375 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 41 ] - - - - - - B 123 122 3 124 198 0 20 205 374 [ BEGL 42 ] - - - - - - S 124 123 1 125 4 0 0 39 58 -0.041 -6.965 -6.373 -7.013 [ MATP 43 ] 38 65 A U - - MP 125 124 1 129 6 2 2 39 58 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -3.182 -2.955 -3.233 3.257 -3.349 -4.209 0.372 -2.306 -3.372 0.780 -3.909 -0.723 0.128 -3.482 -1.337 -1.385 ML 126 124 1 129 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 1 129 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 1 129 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 39 64 A U - - MP 131 130 6 135 6 2 2 37 56 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -4.337 -3.596 -4.194 3.604 -4.525 -5.560 -0.359 -2.816 -4.337 0.261 -4.871 -1.178 -0.755 -4.802 -2.260 -3.206 ML 132 130 6 135 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 37 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 40 63 A U - - MP 137 136 6 141 6 2 2 35 54 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -4.338 -3.576 -4.198 3.601 -4.536 -5.575 -0.356 -2.899 -4.331 0.282 -4.865 -1.146 -0.756 -4.814 -2.263 -3.200 ML 138 136 6 141 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 41 62 g c - - MP 143 142 6 147 6 2 2 33 52 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -3.506 -2.490 -3.568 2.239 -4.201 -4.619 0.127 -3.855 -3.544 2.264 -4.033 1.703 -0.123 -3.809 -1.777 -2.452 ML 144 142 6 147 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 42 61 C G - - MP 149 148 6 153 6 2 2 31 50 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.067 -5.017 -4.667 -1.210 -3.281 -5.010 3.684 -4.143 -4.738 -1.032 -4.938 -2.975 0.175 -5.100 -1.004 -3.562 ML 150 148 6 153 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 43 60 C G - - MP 155 154 6 159 6 2 2 29 48 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.067 -5.017 -4.667 -1.210 -3.281 -5.010 3.684 -4.143 -4.738 -1.032 -4.938 -2.975 0.175 -5.100 -1.004 -3.562 ML 156 154 6 159 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 44 59 C G - - MP 161 160 6 165 6 2 2 27 46 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.067 -5.017 -4.667 -1.210 -3.281 -5.010 3.684 -4.143 -4.738 -1.032 -4.938 -2.975 0.175 -5.100 -1.004 -3.562 ML 162 160 6 165 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 45 58 C G - - MP 167 166 6 171 6 2 2 25 44 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.067 -5.017 -4.667 -1.210 -3.281 -5.010 3.684 -4.143 -4.738 -1.032 -4.938 -2.975 0.175 -5.100 -1.004 -3.562 ML 168 166 6 171 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 46 57 G C - - MP 173 172 6 177 4 2 2 23 42 -3.776 -2.179 -0.539 -5.820 -4.309 -2.944 -4.278 0.513 -4.617 -4.549 -0.003 -4.598 -4.185 3.458 -4.516 -0.631 0.105 -4.096 -2.026 -3.194 ML 174 172 6 177 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 6 177 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 23 41 -2.113 -2.294 -0.891 -5.282 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 22 41 -1.520 -0.687 -5.050 0.000 0.000 0.000 0.000 [ MATL 52 ] 48 - A - - - ML 179 178 6 181 3 1 1 19 37 -8.198 -0.018 -6.852 1.220 -1.065 -0.664 -0.833 D 180 178 6 181 3 0 0 18 37 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 49 - u - - - ML 182 181 3 184 3 1 1 17 36 -8.198 -0.018 -6.852 -0.004 0.298 -1.225 0.428 D 183 181 3 184 3 0 0 17 35 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 50 - U - - - ML 185 184 3 187 3 1 1 16 35 -8.198 -0.330 -2.316 -0.889 -1.290 -1.891 1.476 D 186 184 3 187 3 0 0 16 34 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 51 - U - - - ML 188 187 3 190 3 1 1 15 33 -7.890 -0.022 -6.544 -0.538 -0.881 -1.153 1.214 D 189 187 3 190 3 0 0 14 32 -7.802 -0.676 -1.436 IL 190 190 3 190 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 52 - a - - - ML 191 190 3 193 3 1 1 13 31 -8.135 -0.057 -4.821 0.580 -0.881 -0.556 0.358 D 192 190 3 193 3 0 0 13 31 -6.727 -1.590 -0.603 IL 193 193 3 193 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 53 - U - - - ML 194 193 3 196 2 1 1 1 1 * 0.000 -0.161 -1.000 -1.413 1.157 D 195 193 3 196 2 0 0 0 0 * 0.000 IL 196 196 3 196 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 197 196 3 -1 0 0 0 0 0 [ BEGR 59 ] - - - - - - S 198 123 1 199 3 0 7 182 350 -8.198 -0.018 -6.852 IL 199 199 2 199 3 1 7 183 351 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 66 - U - - - ML 200 199 2 202 3 1 8 182 350 -8.198 -0.018 -6.852 -1.928 -1.849 -2.681 1.724 D 201 199 2 202 3 0 3 179 347 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 6 182 350 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - U - - - ML 203 202 3 205 3 1 7 181 349 -8.198 -0.018 -6.852 -1.928 -1.849 -2.681 1.724 D 204 202 3 205 3 0 2 178 346 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 5 181 349 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - G - - - ML 206 205 3 208 3 1 7 180 348 -8.198 -0.018 -6.852 -0.238 -1.597 1.165 -0.787 D 207 205 3 208 3 0 2 177 345 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 5 180 348 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 69 - U - - - ML 209 208 3 211 3 1 6 179 347 -8.198 -0.018 -6.852 -1.209 -0.634 -1.956 1.414 D 210 208 3 211 3 0 1 176 344 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 5 179 347 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 70 - U - - - ML 212 211 3 214 3 1 6 178 346 -8.198 -0.018 -6.852 -1.052 -1.224 -1.365 1.434 D 213 211 3 214 3 0 1 175 343 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 4 178 346 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 71 - A - - - ML 215 214 3 217 3 1 5 177 345 -8.198 -0.018 -6.852 1.467 -1.641 -1.607 -0.770 D 216 214 3 217 3 0 0 174 342 -6.174 -1.687 -0.566 IL 217 217 3 217 3 1 4 177 345 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 72 - U - - - ML 218 217 3 220 3 1 5 176 344 -8.198 -0.018 -6.852 -1.928 -1.849 -2.681 1.724 D 219 217 3 220 3 0 0 173 341 -6.174 -1.687 -0.566 IL 220 220 3 220 3 1 3 176 344 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 73 - c - - - ML 221 220 3 223 3 1 4 175 343 -8.198 -0.018 -6.852 -0.683 0.698 -1.274 0.424 D 222 220 3 223 3 0 0 171 340 -6.174 -1.687 -0.566 IL 223 223 3 223 3 1 3 175 343 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 74 - U - - - ML 224 223 3 226 3 1 3 174 342 -8.198 -0.018 -6.852 -0.585 -0.963 -1.634 1.321 D 225 223 3 226 3 0 0 170 338 -6.174 -1.687 -0.566 IL 226 226 3 226 3 1 2 174 342 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 75 - g - - - ML 227 226 3 229 3 1 2 173 341 -8.198 -0.018 -6.852 -0.021 -1.193 0.867 -0.409 D 228 226 3 229 3 0 0 168 337 -6.174 -1.687 -0.566 IL 229 229 3 229 3 1 2 173 341 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 76 - A - - - ML 230 229 3 232 3 1 1 172 340 -8.198 -0.513 -1.758 1.001 -0.953 -0.556 -0.320 D 231 229 3 232 3 0 0 166 334 -6.174 -1.687 -0.566 IL 232 232 3 232 3 1 2 174 343 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 77 - a - - - ML 233 232 3 235 3 1 3 173 342 -7.710 -0.025 -6.364 0.618 -0.991 0.198 -0.294 D 234 232 3 235 3 0 0 158 326 -8.217 -3.730 -0.118 IL 235 235 3 235 3 1 2 173 342 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 78 - u - - - ML 236 235 3 238 3 1 3 172 341 -7.710 -0.025 -6.364 0.191 -0.066 -0.928 0.462 D 237 235 3 238 3 0 0 154 323 -8.217 -3.730 -0.118 IL 238 238 3 238 3 1 2 172 341 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 73 ] 79 - u - - - ML 239 238 3 241 3 1 3 171 340 -7.710 -0.025 -6.364 -0.218 -0.319 -1.099 0.905 D 240 238 3 241 3 0 0 148 317 -8.217 -3.730 -0.118 IL 241 241 3 241 3 1 2 171 340 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 74 ] 80 - u - - - ML 242 241 3 244 3 1 3 171 339 -1.438 -0.693 -6.364 0.095 -0.717 -1.034 0.876 D 243 241 3 244 3 0 0 127 295 -8.217 -3.730 -0.118 IL 244 244 3 244 3 1 4 179 347 -0.158 -3.333 -7.837 0.000 0.000 0.000 0.000 [ MATL 75 ] 108 - u - - - ML 245 244 3 247 3 1 3 48 67 -7.710 -0.025 -6.364 -0.114 0.010 -0.392 0.386 D 246 244 3 247 3 0 0 45 65 -8.217 -3.730 -0.118 IL 247 247 3 247 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 76 ] 109 - u - - - ML 248 247 3 250 3 1 3 47 66 -7.710 -0.025 -6.364 -0.150 -0.594 -1.106 0.979 D 249 247 3 250 3 0 0 44 64 -8.217 -3.730 -0.118 IL 250 250 3 250 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 77 ] 110 - g - - - ML 251 250 3 253 3 1 3 46 65 -7.710 -0.025 -6.364 -0.088 -0.844 0.837 -0.484 D 252 250 3 253 3 0 0 43 63 -8.217 -3.730 -0.118 IL 253 253 3 253 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 78 ] 111 - c - - - ML 254 253 3 256 3 1 2 45 64 -7.710 -0.025 -6.364 -0.216 0.501 -1.114 0.335 D 255 253 3 256 3 0 0 43 62 -8.217 -3.730 -0.118 IL 256 256 3 256 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 79 ] 112 - u - - - ML 257 256 3 259 3 1 1 44 63 -7.710 -0.055 -4.943 -0.198 -0.701 -0.711 0.928 D 258 256 3 259 3 0 0 42 62 -8.217 -0.264 -2.609 IL 259 259 3 259 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 80 ] 113 - u - - - ML 260 259 3 262 3 1 1 42 62 -8.177 -0.018 -6.831 -0.425 0.267 -1.265 0.710 D 261 259 3 262 3 0 0 41 61 -6.386 -1.305 -0.777 IL 262 262 3 262 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 81 ] 114 - u - - - ML 263 262 3 265 3 1 1 41 61 -8.198 -0.035 -5.585 0.201 -0.704 0.119 0.202 D 264 262 3 265 3 0 0 40 59 -6.174 -1.687 -0.566 IL 265 265 3 265 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 82 ] 115 - g - - - ML 266 265 3 268 3 1 1 40 60 -8.181 -0.056 -4.852 0.320 -1.116 0.487 -0.170 D 267 265 3 268 3 0 0 39 58 -6.354 -1.354 -0.745 IL 268 268 3 268 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 83 ] 116 - u - - - ML 269 268 3 271 3 1 1 39 58 -4.599 -0.074 -6.815 0.049 -0.098 -1.027 0.623 D 270 268 3 271 3 0 0 37 56 -6.528 -2.041 -0.422 IL 271 271 3 271 3 1 1 41 60 -1.580 -0.704 -4.280 0.000 0.000 0.000 0.000 [ MATL 84 ] 118 - a - - - ML 272 271 3 274 3 1 1 38 57 -5.633 -0.094 -4.548 0.733 -0.823 -0.685 0.203 D 273 271 3 274 3 0 0 36 55 -6.528 -2.041 -0.422 IL 274 274 3 274 3 1 1 40 59 -1.504 -0.753 -4.204 0.000 0.000 0.000 0.000 [ MATL 85 ] 120 - u - - - ML 275 274 3 277 3 1 1 37 56 -8.111 -0.019 -6.765 0.031 -0.848 -0.309 0.692 D 276 274 3 277 3 0 0 35 55 -6.885 -1.290 -0.780 IL 277 277 3 277 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 86 ] 121 - u - - - ML 278 277 3 280 3 1 1 36 55 -8.161 -0.083 -4.262 0.420 -0.550 -0.987 0.561 D 279 277 3 280 3 0 0 34 53 -6.528 -2.041 -0.422 IL 280 280 3 280 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 87 ] 122 - u - - - ML 281 280 3 283 3 1 1 35 54 -8.097 -0.038 -5.487 0.332 -0.675 -1.110 0.724 D 282 280 3 283 3 0 0 33 52 -6.970 -1.175 -0.864 IL 283 283 3 283 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 88 ] 123 - u - - - ML 284 283 3 286 3 1 1 34 52 -8.143 -0.018 -6.797 0.445 -0.541 -0.932 0.514 D 285 283 3 286 3 0 0 32 51 -6.670 -1.672 -0.564 IL 286 286 3 286 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 89 ] 124 - a - - - ML 287 286 3 289 3 1 1 33 51 -8.161 -0.018 -6.815 0.833 -0.751 -0.685 0.004 D 288 286 3 289 3 0 0 31 50 -6.528 -2.041 -0.422 IL 289 289 3 289 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 90 ] 125 - A - - - ML 290 289 3 292 3 1 1 31 50 -8.161 -0.018 -6.815 1.540 -1.788 -1.700 -1.015 D 291 289 3 292 3 0 0 30 49 -6.528 -1.119 -0.919 IL 292 292 3 292 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 91 ] 126 - u - - - ML 293 292 3 295 3 1 1 30 49 -8.198 -0.018 -6.852 -0.299 0.463 -1.355 0.504 D 294 292 3 295 3 0 0 29 48 -6.174 -1.687 -0.566 IL 295 295 3 295 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 92 ] 127 - U - - - ML 296 295 3 298 5 1 1 29 48 -7.300 -0.034 -7.115 -7.327 -8.219 -1.496 -1.204 -2.238 1.585 D 297 295 3 298 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 298 298 3 298 5 1 1 30 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 93 ] 128 144 G C - - MP 299 298 3 303 6 2 2 28 47 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.201 -3.316 -5.358 -0.115 -5.876 -4.868 -1.126 -5.623 -4.614 3.731 -4.921 -1.037 -1.500 -4.765 -3.190 -4.228 ML 300 298 3 303 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 301 298 3 303 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 302 298 3 303 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 303 303 5 303 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 304 304 6 304 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 94 ] 129 143 G C - - MP 305 304 6 309 6 2 2 26 45 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.201 -3.316 -5.358 -0.115 -5.876 -4.868 -1.126 -5.623 -4.614 3.731 -4.921 -1.037 -1.500 -4.765 -3.190 -4.228 ML 306 304 6 309 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 307 304 6 309 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 308 304 6 309 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 309 309 5 309 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 310 310 6 310 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 95 ] 130 142 G C - - MP 311 310 6 315 6 2 2 24 43 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -5.201 -3.316 -5.358 -0.115 -5.876 -4.868 -1.126 -5.623 -4.614 3.731 -4.921 -1.037 -1.500 -4.765 -3.190 -4.228 ML 312 310 6 315 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 313 310 6 315 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 314 310 6 315 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 315 315 5 315 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 316 316 6 316 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 96 ] 131 141 C G - - MP 317 316 6 321 4 2 2 22 41 -5.143 -7.405 -0.077 -5.820 -5.067 -5.017 -4.667 -1.210 -3.281 -5.010 3.684 -4.143 -4.738 -1.032 -4.938 -2.975 0.175 -5.100 -1.004 -3.562 ML 318 316 6 321 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 319 316 6 321 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 320 316 6 321 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 321 321 5 321 4 1 1 24 42 -1.839 -1.864 -1.270 -5.008 0.000 0.000 0.000 0.000 IR 322 322 6 322 3 1 1 22 41 -1.519 -0.743 -4.219 0.000 0.000 0.000 0.000 [ MATL 97 ] 133 - U - - - ML 323 322 6 325 3 1 1 19 37 -8.198 -0.371 -2.163 -0.975 -1.125 -1.876 1.465 D 324 322 6 325 3 0 0 18 37 -6.174 -1.687 -0.566 IL 325 325 3 325 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 98 ] 134 - a - - - ML 326 325 3 328 3 1 1 18 36 -7.850 -0.022 -6.504 0.308 0.063 -0.975 0.273 D 327 325 3 328 3 0 0 17 35 -7.912 -0.334 -2.303 IL 328 328 3 328 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 99 ] 135 - U - - - ML 329 328 3 331 3 1 1 17 35 -8.198 -0.018 -6.852 -0.800 -1.257 -1.837 1.448 D 330 328 3 331 3 0 0 16 35 -6.174 -1.687 -0.566 IL 331 331 3 331 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 100 ] 136 - u - - - ML 332 331 3 334 3 1 1 15 33 -8.198 -0.018 -6.852 0.029 -0.885 -0.494 0.789 D 333 331 3 334 3 0 0 15 33 -6.174 -1.687 -0.566 IL 334 334 3 334 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 101 ] 137 - a - - - ML 335 334 3 337 3 1 1 14 32 -5.151 -0.556 -1.778 0.897 -1.011 -0.404 -0.176 D 336 334 3 337 3 0 0 13 30 -6.174 -1.687 -0.566 IL 337 337 3 337 3 1 1 17 34 -1.536 -0.732 -4.236 0.000 0.000 0.000 0.000 [ MATL 102 ] 139 - a - - - ML 338 337 3 340 2 1 1 1 1 * 0.000 0.382 -0.663 -0.215 0.268 D 339 337 3 340 2 0 0 0 0 * 0.000 IL 340 340 3 340 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 103 ] - - - - - - E 341 340 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME rimP ACC RF01770 DESC Gammaprotebacteria rimP leader LENG 111 MAXL 353 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:41:31 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 46 EFFN 2.591431 CKSUM 13062046 STATS LOCAL MSV -10.0053 0.71841 STATS LOCAL VITERBI -10.8379 0.71841 STATS LOCAL FORWARD -3.3306 0.71841 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44514 1.55224 1.49050 1.11702 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 0.00000 * 1 1.17226 1.76244 1.29609 1.40606 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 2 1.30721 1.77076 1.14250 1.42627 2 g - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 3 1.49173 1.05989 2.00733 1.22357 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 4 1.41418 1.63004 1.49061 1.09148 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 5 1.07182 1.65250 1.37302 1.54786 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 6 1.31281 1.51926 1.71877 1.10028 6 u - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 7 1.28110 1.55236 1.75237 1.08721 7 u - - : 1.38629 1.38629 1.38629 1.38629 0.07534 4.04718 2.89852 1.46634 0.26236 1.09861 0.40547 8 1.27425 1.35437 1.86977 1.17736 8 u - - : 1.38629 1.38629 1.38629 1.38629 0.12643 4.00882 2.29649 1.46634 0.26236 1.63976 0.21570 9 1.25126 1.67696 1.77656 1.02807 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.04038 3.92276 3.92276 1.46634 0.26236 0.40971 1.09018 10 1.65090 1.82034 1.35585 0.94566 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.03638 4.02493 4.02493 1.46634 0.26236 0.63405 0.75595 11 1.05492 1.48436 1.81654 1.33732 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 12 1.18210 2.05660 0.98214 1.65565 12 g - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 13 1.38284 1.53861 1.35465 1.28585 13 u - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 14 1.39946 1.51418 1.36679 1.27886 14 u - - : 1.38629 1.38629 1.38629 1.38629 0.10688 4.04718 2.47820 1.46634 0.26236 1.09861 0.40547 15 1.23405 1.81711 1.75566 0.98457 15 u - - : 1.38629 1.38629 1.38629 1.38629 0.03815 3.97844 3.97844 1.46634 0.26236 0.34820 1.22403 16 0.85329 1.95271 2.16430 1.14800 16 a - - : 1.38629 1.38629 1.38629 1.38629 0.04383 4.04718 3.67270 1.46634 0.26236 1.09861 0.40547 17 1.25615 1.74331 2.19486 0.84645 17 u - - : 1.38629 1.38629 1.38629 1.38629 0.03586 4.03921 4.03921 1.46634 0.26236 0.86513 0.54645 18 1.64984 0.88395 2.38997 1.19357 18 c - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 19 0.24173 2.84933 2.73171 2.38878 19 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 20 2.32491 3.36042 0.20404 2.95534 20 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 21 2.82009 3.71383 0.12929 3.28879 21 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 22 2.82009 3.71383 0.12929 3.28879 22 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 23 2.72061 2.66587 3.24225 0.19170 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 24 1.95789 0.57556 2.64859 1.48854 24 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 25 2.15029 0.40356 2.87153 1.83886 25 C - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 26 0.13650 3.35668 3.06938 3.07274 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 27 2.11029 3.20231 0.25174 2.80204 27 G - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 28 1.61270 1.17344 2.32084 0.93354 28 u - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 29 0.88641 1.93154 1.98970 1.18349 29 a - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 30 0.78586 2.11967 1.36287 1.78216 30 a - - : 1.38629 1.38629 1.38629 1.38629 0.11414 2.78055 3.08213 1.40205 0.28249 1.09861 0.40547 31 1.99738 0.92295 2.55640 0.94320 35 c - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01838 4.01838 1.46634 0.26236 1.53146 0.24363 32 0.39324 2.25113 2.42614 2.02896 36 A - - : 1.38629 1.38629 1.38629 1.38629 0.10743 4.01838 2.47841 1.46634 0.26236 1.53146 0.24363 33 1.03343 2.00163 2.15797 0.93257 37 u - - : 1.38629 1.38629 1.38629 1.38629 0.03926 3.95021 3.95021 1.46634 0.26236 0.27612 1.42182 34 0.48485 2.26317 1.85655 2.08764 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 35 0.26580 2.76351 2.21517 2.79354 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 36 0.26774 2.76969 2.19883 2.79233 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 37 1.14916 2.52857 0.67343 2.37121 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 38 3.31607 0.21289 3.10536 2.20141 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 39 3.31455 0.21303 3.10461 2.20114 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 40 3.31336 0.21315 3.10402 2.20092 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 41 3.31242 0.21324 3.10356 2.20075 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 42 2.24340 2.63718 0.31836 2.35387 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.10611 2.48653 4.04718 0.37742 1.15718 1.09861 0.40547 43 0.54120 2.12369 1.84602 1.96256 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 44 1.38875 1.17983 2.23484 1.08983 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 45 2.00130 2.27934 2.69555 0.36387 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.27200 4.04718 1.51107 1.46634 0.26236 1.09861 0.40547 46 1.75872 1.99646 2.18491 0.54571 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04485 3.82002 3.82002 1.46634 0.26236 0.37712 1.15782 47 0.98432 1.99640 1.77164 1.13809 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05499 4.00075 3.34673 1.46634 0.26236 0.67061 0.71621 48 1.49779 2.07856 2.36441 0.58472 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.28096 1.48304 4.01779 0.52059 0.90183 0.56106 0.84537 49 2.53798 0.36339 2.46239 1.96307 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 50 2.47817 3.27022 0.18411 3.07340 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 51 2.47843 3.27059 0.18405 3.07384 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 52 2.47867 3.27093 0.18398 3.07425 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 53 2.47882 3.27114 0.18395 3.07449 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 54 2.59922 1.14825 2.33282 0.67049 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 55 3.01602 2.45075 2.66974 0.22878 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 56 3.01224 2.46338 2.66925 0.22769 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 57 2.40307 2.07593 2.13710 0.40628 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 58 2.72061 2.66587 3.24225 0.19170 66 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 59 2.72061 2.66587 3.24225 0.19170 67 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 60 1.55088 2.49230 0.57945 1.93094 68 G - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 61 2.22250 1.82545 2.74078 0.40647 69 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 62 2.11430 2.23351 2.33140 0.39309 70 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 63 0.36982 2.52286 2.49908 1.91902 71 A - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 64 2.72061 2.66587 3.24225 0.19170 72 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 65 1.85884 0.90300 2.26884 1.09254 73 c - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 66 1.79104 2.05280 2.51737 0.47134 74 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 67 1.40066 2.21258 0.78564 1.66962 75 g - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 68 0.69251 2.04614 1.77131 1.60775 76 A - - - 1.38629 1.38629 1.38629 1.38629 0.41300 4.04718 1.13674 1.46634 0.26236 1.09861 0.40547 69 0.95840 2.07297 1.24953 1.58943 77 a - - - 1.38629 1.38629 1.38629 1.38629 0.05146 3.68564 3.68564 1.46634 0.26236 3.01381 0.05035 70 1.25418 1.43190 2.02881 1.06611 78 u - - - 1.38629 1.38629 1.38629 1.38629 0.05146 3.68564 3.68564 1.46634 0.26236 3.01381 0.05035 71 1.53735 1.60733 2.14723 0.75967 79 u - - - 1.38629 1.38629 1.38629 1.38629 0.05146 3.68564 3.68564 1.46634 0.26236 3.01381 0.05035 72 1.32037 1.88274 2.10268 0.77944 80 u - - - 1.38629 1.38629 1.38629 1.38629 0.58789 0.86888 3.68564 2.79605 0.06299 3.01381 0.05035 73 1.46488 1.37974 1.65813 1.11855 108 u - - - 1.38629 1.38629 1.38629 1.38629 0.05146 3.68564 3.68564 1.46634 0.26236 3.01381 0.05035 74 1.48966 1.79786 2.15191 0.70798 109 u - - - 1.38629 1.38629 1.38629 1.38629 0.05146 3.68564 3.68564 1.46634 0.26236 3.01381 0.05035 75 1.44676 1.97098 0.80641 1.72098 110 g - - - 1.38629 1.38629 1.38629 1.38629 0.05146 3.68564 3.68564 1.46634 0.26236 3.01381 0.05035 76 1.53533 1.03935 2.15775 1.15408 111 c - - - 1.38629 1.38629 1.38629 1.38629 0.05146 3.68564 3.68564 1.46634 0.26236 3.01381 0.05035 77 1.52281 1.87197 1.87896 0.74374 112 u - - - 1.38629 1.38629 1.38629 1.38629 0.07496 3.68564 3.05467 1.46634 0.26236 0.10337 2.32066 78 1.68044 1.20162 2.26220 0.89433 113 u - - - 1.38629 1.38629 1.38629 1.38629 0.03613 4.03169 4.03169 1.46634 0.26236 0.72472 0.66254 79 1.24695 1.87407 1.30379 1.24611 114 u - - - 1.38629 1.38629 1.38629 1.38629 0.04901 4.04718 3.49489 1.46634 0.26236 1.09861 0.40547 80 1.16439 2.15930 1.04921 1.50387 115 g - - - 1.38629 1.38629 1.38629 1.38629 0.06482 4.03421 3.09969 1.46634 0.26236 0.76606 0.62519 81 1.35253 1.45417 2.09763 0.95432 116 u - - - 1.38629 1.38629 1.38629 1.38629 0.07893 2.84837 4.01979 0.53507 0.88099 1.51425 0.24843 82 0.87871 1.95637 1.86052 1.24577 118 a - - - 1.38629 1.38629 1.38629 1.38629 0.09369 3.33540 2.92190 0.81703 0.58294 1.51425 0.24843 83 1.36477 1.97358 1.60052 0.90681 120 u - - - 1.38629 1.38629 1.38629 1.38629 0.03796 3.98326 3.98326 1.46634 0.26236 0.78063 0.61271 84 1.09547 1.76744 2.06998 0.99788 121 u - - - 1.38629 1.38629 1.38629 1.38629 0.08521 4.01979 2.75317 1.46634 0.26236 1.51425 0.24843 85 1.15631 1.85347 2.15515 0.88485 122 u - - - 1.38629 1.38629 1.38629 1.38629 0.05283 3.97294 3.42227 1.46634 0.26236 0.69275 0.69355 86 1.07819 1.76133 2.03183 1.03036 123 u - - - 1.38629 1.38629 1.38629 1.38629 0.03707 4.00652 4.00652 1.46634 0.26236 1.11333 0.39819 87 0.80952 1.90655 1.86071 1.38320 124 a - - - 1.38629 1.38629 1.38629 1.38629 0.03657 4.01979 4.01979 1.46634 0.26236 1.51425 0.24843 88 0.31938 2.62449 2.56297 2.08872 125 A - - - 1.38629 1.38629 1.38629 1.38629 0.03657 4.01979 4.01979 1.46634 0.26236 0.57972 0.82110 89 1.59328 1.06578 2.32476 1.03711 126 u - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 90 2.42151 2.21960 2.93567 0.28840 127 U - - - 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 91 2.66295 3.36112 0.15235 3.30033 128 G - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 92 2.66212 3.36009 0.15252 3.29890 129 G - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 93 2.66134 3.35911 0.15268 3.29756 130 G - - < 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 94 3.31593 0.21290 3.10529 2.20138 131 C - - < 1.38629 1.38629 1.38629 1.38629 0.05793 3.24896 4.04718 0.74096 0.64752 1.09861 0.40547 95 2.06123 2.16494 2.68514 0.37145 133 U - - _ 1.38629 1.38629 1.38629 1.38629 0.30367 4.04718 1.40887 1.46634 0.26236 1.09861 0.40547 96 1.17285 1.34277 2.06133 1.19696 134 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04626 3.78977 3.78977 1.46634 0.26236 0.13362 2.07879 97 1.94010 2.25633 2.65820 0.38346 135 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 98 1.36585 1.99881 1.72834 0.83988 136 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 99 0.76449 2.08685 1.66608 1.50794 137 a - - _ 1.38629 1.38629 1.38629 1.38629 0.44673 3.13203 1.14994 0.66971 0.71714 1.09861 0.40547 100 1.12186 1.84569 1.53546 1.20047 139 a - - _ 1.38629 1.38629 1.38629 1.38629 0.08372 2.89345 3.69167 0.74096 0.64752 0.10468 2.30876 101 2.47856 3.27077 0.18401 3.07405 141 G - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 102 3.48752 0.18199 3.19272 2.35648 142 C - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 103 3.48346 0.18232 3.19088 2.35571 143 C - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 104 3.47430 0.18306 3.18671 2.35396 144 C - - > 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 105 2.72061 2.66587 3.24225 0.19170 145 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 106 2.72061 2.66587 3.24225 0.19170 146 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 107 2.72061 2.66587 3.24225 0.19170 147 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 108 2.72061 2.66587 3.24225 0.19170 148 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 109 2.72061 2.66587 3.24225 0.19170 149 U - - : 1.38629 1.38629 1.38629 1.38629 0.03557 4.04718 4.04718 1.46634 0.26236 1.09861 0.40547 110 2.72061 2.66587 3.24225 0.19170 150 U - - : 1.38629 1.38629 1.38629 1.38629 0.04352 4.04718 3.68441 1.46634 0.26236 1.09861 0.40547 111 2.25545 1.91409 2.77166 0.37813 151 U - - : 1.38629 1.38629 1.38629 1.38629 0.01808 4.02174 * 1.46634 0.26236 0.00000 * //