INFERNAL1/a [1.1.5 | Sep 2023] NAME flavi_FSE ACC RF01768 DESC ribosomal frameshift site STATES 190 NODES 53 CLEN 62 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 12:18:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01768/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.102051 CKSUM 3741401675 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 84.30 NC 42.90 EFP7GF -10.0282 0.71911 ECMLC 0.60801 -10.06648 0.25000 1600000 635793 0.001887 ECMGC 0.41861 -18.87287 -4.71432 1600000 149996 0.002667 ECMLI 0.61034 -8.35325 1.18877 1600000 405951 0.002956 ECMGI 0.41988 -15.18623 -2.21830 1600000 92640 0.004318 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -6.928 -8.173 -0.077 -4.627 IL 1 1 2 1 4 1 12 78 98 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 62 - a - - MR 3 2 3 5 3 1 13 77 96 -8.415 -0.018 -6.733 0.681 -0.438 -1.014 0.218 D 4 2 3 5 3 0 7 75 94 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 12 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 61 - a - - MR 6 5 3 8 3 1 12 76 95 -8.415 -0.018 -6.733 0.889 -1.440 0.299 -0.863 D 7 5 3 8 3 0 7 74 93 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 11 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 60 - g - - MR 9 8 3 11 3 1 12 75 94 -8.415 -0.018 -6.733 0.531 -1.501 0.739 -0.911 D 10 8 3 11 3 0 6 73 92 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 11 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 59 - A - - MR 12 11 3 14 3 1 11 74 93 -8.415 -0.018 -6.733 1.746 -2.502 -2.121 -2.057 D 13 11 3 14 3 0 5 72 91 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 58 - C - - MR 15 14 3 17 3 1 10 73 92 -8.415 -0.018 -6.733 -1.898 1.664 -2.726 -1.280 D 16 14 3 17 3 0 4 71 90 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 9 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 57 - C - - MR 18 17 3 20 3 1 9 72 91 -8.415 -0.018 -6.733 -1.898 1.664 -2.726 -1.280 D 19 17 3 20 3 0 3 70 89 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 8 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 56 - G - - MR 21 20 3 23 3 1 9 71 90 -8.415 -0.018 -6.733 -1.718 -2.959 1.753 -2.346 D 22 20 3 23 3 0 3 69 88 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 7 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 55 - G - - MR 24 23 3 26 3 1 8 70 89 -8.415 -0.018 -6.733 0.159 -1.663 1.065 -1.073 D 25 23 3 26 3 0 2 68 87 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 7 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 54 - C - - MR 27 26 3 29 3 1 7 69 88 -8.415 -0.018 -6.733 -1.898 1.664 -2.726 -1.280 D 28 26 3 29 3 0 1 67 86 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 6 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 53 - A - - MR 30 29 3 32 3 1 6 68 87 -8.415 -0.018 -6.733 1.746 -2.502 -2.121 -2.057 D 31 29 3 32 3 0 1 66 85 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 5 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 52 - G - - MR 33 32 3 35 3 1 6 67 86 -8.415 -0.018 -6.733 -1.718 -2.959 1.753 -2.346 D 34 32 3 35 3 0 0 65 84 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 4 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 51 - G - - MR 36 35 3 38 3 1 5 66 85 -8.415 -0.018 -6.733 -1.718 -2.959 1.753 -2.346 D 37 35 3 38 3 0 0 64 83 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 4 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 50 - U - - MR 39 38 3 41 3 1 5 65 84 -8.415 -0.018 -6.733 -1.606 -1.581 -2.345 1.651 D 40 38 3 41 3 0 0 63 82 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 3 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 49 - G - - MR 42 41 3 44 3 1 4 64 83 -8.415 -0.018 -6.733 -1.718 -2.959 1.753 -2.346 D 43 41 3 44 3 0 0 62 81 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 48 - G - - MR 45 44 3 47 3 1 3 63 82 -8.415 -0.018 -6.733 -1.718 -2.959 1.753 -2.346 D 46 44 3 47 3 0 0 61 80 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 2 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 47 - A - - MR 48 47 3 50 3 1 3 62 81 -8.415 -0.018 -6.733 1.746 -2.502 -2.121 -2.057 D 49 47 3 50 3 0 0 60 79 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 46 - G - - MR 51 50 3 53 3 1 3 61 80 -8.415 -0.018 -6.733 -1.718 -2.959 1.753 -2.346 D 52 50 3 53 3 0 0 59 78 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 45 - A - - MR 54 53 3 56 3 1 2 60 79 -8.415 -0.018 -6.733 1.746 -2.502 -2.121 -2.057 D 55 53 3 56 3 0 0 58 77 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 44 - A - - MR 57 56 3 59 3 1 2 59 78 -8.415 -0.018 -6.733 1.746 -2.502 -2.121 -2.057 D 58 56 3 59 3 0 0 57 76 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 43 - c - - MR 60 59 3 62 3 1 1 58 77 -8.415 -0.018 -6.733 -0.391 0.357 0.224 -0.343 D 61 59 3 62 3 0 0 56 75 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 42 - G - - MR 63 62 3 65 3 1 1 57 76 -8.415 -0.018 -6.733 -1.718 -2.959 1.753 -2.346 D 64 62 3 65 3 0 0 55 74 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 41 - a - - MR 66 65 3 68 3 1 1 56 75 -8.415 -0.018 -6.733 0.534 0.399 -1.177 -0.338 D 67 65 3 68 3 0 0 54 73 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 40 - u - - MR 69 68 3 71 3 1 1 55 74 -8.415 -0.018 -6.733 -0.404 -0.947 0.218 0.643 D 70 68 3 71 3 0 0 53 72 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 39 - U - - MR 72 71 3 74 5 1 1 54 73 -7.150 -0.038 -6.965 -7.177 -8.069 -1.606 -1.581 -2.345 1.651 D 73 71 3 74 5 0 0 52 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 1 38 G C - - MP 75 74 3 79 6 2 2 53 72 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -3.746 -2.566 -3.748 1.355 -4.380 -4.408 0.144 -4.130 -3.766 3.137 -4.171 0.603 -0.136 -3.750 -1.823 -2.665 ML 76 74 3 79 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 2 37 G C - - MP 81 80 6 85 6 2 2 51 70 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -4.872 -3.156 -4.984 0.113 -5.415 -4.744 -0.747 -5.235 -4.412 3.668 -4.739 -0.860 -1.129 -4.553 -2.792 -3.858 ML 82 80 6 85 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 3 36 G U - - MP 87 86 6 91 6 2 2 49 68 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -3.700 -2.444 -3.874 1.081 -4.659 -5.384 -0.248 -3.886 -3.514 1.243 -4.040 3.166 -0.604 -4.573 -2.190 -2.557 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 4 35 C G - - MP 93 92 6 97 6 2 2 47 66 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -4.693 -4.612 -4.359 -0.831 -3.046 -4.752 3.593 -3.870 -4.413 -0.610 -4.658 -2.561 0.454 -4.753 -0.756 -3.248 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 5 34 C G - - MP 99 98 6 103 6 2 2 45 64 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -4.693 -4.612 -4.359 -0.831 -3.046 -4.752 3.593 -3.870 -4.413 -0.610 -4.658 -2.561 0.454 -4.753 -0.756 -3.248 ML 100 98 6 103 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 6 33 U A - - MP 105 104 6 109 6 2 2 43 62 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -4.344 -4.172 -4.165 -0.456 -3.074 -4.715 1.257 -3.781 -4.168 -0.224 -4.534 -2.066 3.396 -4.489 -0.747 -2.977 ML 106 104 6 109 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 7 32 u g - - MP 111 110 6 115 6 2 2 41 60 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -4.041 -4.060 -3.775 -0.390 -2.543 -4.203 2.177 -3.326 -3.824 -0.190 -4.129 -2.164 0.933 -4.114 2.775 -2.696 ML 112 110 6 115 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 8 31 C G - - MP 117 116 6 121 6 2 2 39 58 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -3.960 -3.930 -3.758 -0.179 -2.576 -4.248 3.179 -3.334 -3.782 0.037 -4.123 -1.941 1.032 -4.060 0.890 -2.639 ML 118 116 6 121 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 9 30 U A - - MP 123 122 6 127 6 2 2 37 56 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -4.344 -4.172 -4.165 -0.456 -3.074 -4.715 1.257 -3.781 -4.168 -0.224 -4.534 -2.066 3.396 -4.489 -0.747 -2.977 ML 124 122 6 127 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 10 29 G C - - MP 129 128 6 133 6 2 2 35 54 -9.134 -9.073 -0.021 -7.850 -8.130 -8.525 -4.872 -3.156 -4.984 0.113 -5.415 -4.744 -0.747 -5.235 -4.412 3.668 -4.739 -0.860 -1.129 -4.553 -2.792 -3.858 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 11 28 G C - - MP 135 134 6 139 4 2 2 33 52 -7.017 -7.224 -0.051 -5.638 -4.872 -3.156 -4.984 0.113 -5.415 -4.744 -0.747 -5.235 -4.412 3.668 -4.739 -0.860 -1.129 -4.553 -2.792 -3.858 ML 136 134 6 139 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 12 - U - - - ML 141 140 6 143 3 1 1 30 49 -8.029 -0.020 -6.683 -1.606 -1.581 -2.345 1.651 D 142 140 6 143 3 0 0 29 48 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 13 - g - - - ML 144 143 3 146 3 1 1 29 48 -8.029 -0.020 -6.683 0.062 -0.017 0.186 -0.269 D 145 143 3 146 3 0 0 28 47 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 14 - g - - - ML 147 146 3 149 3 1 1 28 47 -8.029 -0.020 -6.683 0.561 -1.491 0.708 -0.901 D 148 146 3 149 3 0 0 27 46 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 15 - U - - - ML 150 149 3 152 3 1 1 27 46 -8.029 -0.020 -6.683 -1.606 -1.581 -2.345 1.651 D 151 149 3 152 3 0 0 26 45 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 16 - G - - - ML 153 152 3 155 3 1 1 26 45 -8.029 -0.020 -6.683 -0.785 -1.628 1.281 -0.585 D 154 152 3 155 3 0 0 25 44 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 17 - U - - - ML 156 155 3 158 3 1 1 25 43 -8.029 -0.020 -6.683 -1.606 -1.581 -2.345 1.651 D 157 155 3 158 3 0 0 24 43 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 18 - U - - - ML 159 158 3 161 3 1 1 23 42 -8.029 -0.020 -6.683 -1.606 -1.581 -2.345 1.651 D 160 158 3 161 3 0 0 22 41 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 19 - c - - - ML 162 161 3 164 3 1 1 22 41 -8.029 -0.020 -6.683 -0.776 0.650 -1.571 0.595 D 163 161 3 164 3 0 0 21 40 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 20 - c - - - ML 165 164 3 167 3 1 1 21 40 -8.029 -0.020 -6.683 -0.782 0.678 -1.578 0.569 D 166 164 3 167 3 0 0 20 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 21 - U - - - ML 168 167 3 170 3 1 1 20 39 -8.029 -0.020 -6.683 -1.606 -1.581 -2.345 1.651 D 169 167 3 170 3 0 0 19 38 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 22 - G - - - ML 171 170 3 173 3 1 1 19 37 -8.029 -0.020 -6.683 -1.718 -2.959 1.753 -2.346 D 172 170 3 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 23 - G - - - ML 174 173 3 176 3 1 1 17 36 -8.029 -0.020 -6.683 -1.718 -2.959 1.753 -2.346 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 24 - C - - - ML 177 176 3 179 3 1 1 16 35 -8.029 -0.020 -6.683 -1.898 1.664 -2.726 -1.280 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 25 - C - - - ML 180 179 3 182 3 1 1 15 33 -8.029 -0.020 -6.683 -1.898 1.664 -2.726 -1.280 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 26 - A - - - ML 183 182 3 185 3 1 1 13 31 -8.029 -0.020 -6.683 1.746 -2.502 -2.121 -2.057 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 27 - C - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -1.898 1.664 -2.726 -1.280 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME flavi_FSE ACC RF01768 DESC ribosomal frameshift site LENG 62 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 12:18:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01768/CM NSEQ 7 EFFN 2.539551 CKSUM 3741401675 STATS LOCAL MSV -8.3268 0.71911 STATS LOCAL VITERBI -8.6691 0.71911 STATS LOCAL FORWARD -3.7920 0.71911 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56694 1.42210 1.13284 1.47844 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 0.00000 * 1 1.71503 2.63281 0.40716 2.49344 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 2 2.64545 3.33466 0.15606 3.27305 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 3 1.96256 2.99459 0.28496 2.85774 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 4 3.29173 0.21818 3.07804 2.18229 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 5 3.29079 0.21828 3.07758 2.18212 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 6 3.07475 1.98282 2.83744 0.27768 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 7 2.96237 1.23172 2.76163 0.52201 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 8 2.77999 0.49581 2.55422 1.38178 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 9 3.07280 1.98269 2.83655 0.27789 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 10 2.64311 3.33177 0.15655 3.26907 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 11 2.64288 3.33149 0.15660 3.26868 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 12 2.69813 2.64718 3.21896 0.19623 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 13 1.36300 1.37777 1.22373 1.62030 13 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 14 0.98345 2.52068 0.85523 2.11698 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 15 2.69813 2.64718 3.21896 0.19623 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 16 2.04329 2.63782 0.44214 1.85647 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 17 2.69813 2.64718 3.21896 0.19623 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 18 2.69813 2.64718 3.21896 0.19623 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 19 2.01628 0.89051 2.57887 0.96615 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 20 2.02099 0.87005 2.58501 0.98578 20 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 21 2.69813 2.64718 3.21896 0.19623 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 22 2.79605 3.68671 0.13287 3.26184 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 23 2.79605 3.68671 0.13287 3.26184 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 24 2.95993 0.17989 3.53616 2.48065 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 25 2.95993 0.17989 3.53616 2.48065 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 26 0.14003 3.33295 3.04793 3.04653 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 27 2.95993 0.17989 3.53616 2.48065 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 28 3.46339 0.18589 3.16764 2.34120 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 29 3.46415 0.18583 3.16798 2.34134 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 30 0.31515 3.02206 1.81951 2.82151 30 A - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 31 1.99459 2.71631 0.32977 2.54179 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 32 2.08433 2.91728 0.28006 2.72129 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 33 0.31489 3.02342 1.81967 2.82312 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 34 2.46069 3.24551 0.18826 3.05170 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 35 2.46153 3.24670 0.18804 3.05310 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 36 3.06991 1.98631 2.79284 0.28087 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 37 3.48315 0.18428 3.17652 2.34494 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 38 2.74164 0.54702 2.44869 1.30765 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 39 2.69813 2.64718 3.21896 0.19623 39 U - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 40 1.72305 2.10256 1.20647 0.91608 40 u - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 41 0.99891 1.06964 2.27809 1.68143 41 a - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 42 2.79605 3.68671 0.13287 3.26184 42 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 43 1.72655 1.09640 1.19256 1.68964 43 c - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 44 0.14003 3.33295 3.04793 3.04653 44 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 45 0.14003 3.33295 3.04793 3.04653 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 46 2.79605 3.68671 0.13287 3.26184 46 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 47 0.14003 3.33295 3.04793 3.04653 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 48 2.79605 3.68671 0.13287 3.26184 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 49 2.79605 3.68671 0.13287 3.26184 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 50 2.69813 2.64718 3.21896 0.19623 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 51 2.79605 3.68671 0.13287 3.26184 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 52 2.79605 3.68671 0.13287 3.26185 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 53 0.14003 3.33295 3.04793 3.04653 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 54 2.95993 0.17989 3.53616 2.48065 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 55 1.28999 2.65201 0.59998 2.25005 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 56 2.79605 3.68671 0.13287 3.26184 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 57 2.95993 0.17989 3.53616 2.48065 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 58 2.95993 0.17989 3.53616 2.48065 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 59 0.14003 3.33295 3.04793 3.04653 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 60 1.00605 2.52782 0.83252 2.12398 60 g - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 61 0.74120 2.48314 1.15189 2.08796 61 a - - : 1.38629 1.38629 1.38629 1.38629 0.03852 3.96902 3.96902 1.46634 0.26236 1.09861 0.40547 62 0.89105 1.69860 2.13711 1.24188 62 a - - : 1.38629 1.38629 1.38629 1.38629 0.01944 3.94995 * 1.46634 0.26236 0.00000 * //