INFERNAL1/a [1.1.5 | Sep 2023] NAME sucC ACC RF01759 DESC sucC RNA STATES 214 NODES 61 CLEN 70 W 88 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 22:23:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01759/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 18 EFFN 2.377441 CKSUM 1059023631 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 59.40 NC 48.80 EFP7GF -9.0639 0.71888 ECMLC 0.68876 -6.02685 2.46026 1600000 414860 0.002893 ECMGC 0.41428 -17.84740 -4.81844 1600000 88353 0.004527 ECMLI 0.65491 -3.95140 4.04396 1600000 225559 0.005320 ECMGI 0.45501 -12.56296 -1.22169 1600000 69692 0.005740 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 107 -7.121 -7.328 -0.047 -5.742 IL 1 1 2 1 4 1 27 92 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 91 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 27 88 107 -8.125 -0.018 -6.779 -0.227 -1.986 1.331 -1.405 D 4 2 3 5 3 0 21 86 106 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 26 90 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 26 87 106 -8.125 -0.018 -6.779 -1.789 -1.733 -2.536 1.695 D 7 5 3 8 3 0 21 85 105 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 25 89 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 25 86 105 -8.125 -0.018 -6.779 -0.822 1.120 -0.805 -0.539 D 10 8 3 11 3 0 20 84 103 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 24 88 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 24 84 103 -8.125 -0.018 -6.779 1.781 -2.699 -2.298 -2.274 D 13 11 3 14 3 0 19 83 102 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 23 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 23 83 102 -8.125 -0.018 -6.779 -1.164 1.230 -2.001 -0.062 D 16 14 3 17 3 0 18 82 101 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 23 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 22 82 101 -8.125 -0.018 -6.779 1.276 -0.685 -1.351 -0.824 D 19 17 3 20 3 0 18 81 100 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 22 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 21 81 100 -8.125 -0.018 -6.779 -0.687 -0.853 1.204 -0.939 D 22 20 3 23 3 0 17 80 99 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 21 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 20 80 99 -8.506 -0.017 -6.824 -1.922 -3.192 1.790 -2.579 D 25 23 3 26 3 0 16 79 98 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 20 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 77 - G - - MR 27 26 3 29 3 1 20 79 98 -8.506 -0.017 -6.824 -0.227 -1.986 1.331 -1.405 D 28 26 3 29 3 0 14 78 96 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 19 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 76 - A - - MR 30 29 3 32 3 1 19 78 97 -8.506 -0.017 -6.824 1.276 -0.685 -1.351 -0.824 D 31 29 3 32 3 0 14 77 95 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 18 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 75 - A - - MR 33 32 3 35 3 1 18 77 96 -8.506 -0.017 -6.824 1.276 -0.685 -1.351 -0.824 D 34 32 3 35 3 0 13 76 94 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 74 - a - - MR 36 35 3 38 3 1 17 76 95 -8.506 -0.017 -6.824 0.376 -0.136 -0.410 0.056 D 37 35 3 38 3 0 12 75 93 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 16 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 73 - A - - MR 39 38 3 41 3 1 16 75 94 -8.506 -0.017 -6.824 1.781 -2.699 -2.298 -2.274 D 40 38 3 41 3 0 11 73 92 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 16 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 72 - A - - MR 42 41 3 44 3 1 16 74 93 -2.617 -0.272 -6.824 1.117 -1.565 -0.003 -1.012 D 43 41 3 44 3 0 11 72 91 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 15 74 93 -2.586 -0.325 -4.825 0.000 0.000 0.000 0.000 [ MATR 15 ] - 70 - U - - MR 45 44 3 47 3 1 15 73 91 -8.506 -0.017 -6.824 -1.789 -1.733 -2.536 1.695 D 46 44 3 47 3 0 10 71 90 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 74 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 69 - G - - MR 48 47 3 50 3 1 14 72 90 -8.506 -0.017 -6.824 -1.922 -3.192 1.790 -2.579 D 49 47 3 50 3 0 9 70 89 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 73 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 68 - G - - MR 51 50 3 53 3 1 13 71 89 -8.506 -0.017 -6.824 -1.922 -3.192 1.790 -2.579 D 52 50 3 53 3 0 8 69 88 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 12 72 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 67 - C - - MR 54 53 3 56 3 1 12 70 88 -8.506 -0.017 -6.824 -2.137 1.716 -2.968 -1.471 D 55 53 3 56 3 0 7 68 87 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 11 71 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 66 - A - - MR 57 56 3 59 3 1 11 69 87 -8.506 -0.017 -6.824 1.781 -2.699 -2.298 -2.274 D 58 56 3 59 3 0 7 67 86 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 11 70 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 65 - G - - MR 60 59 3 62 3 1 10 68 86 -2.918 -0.219 -6.824 0.031 -1.830 1.186 -1.247 D 61 59 3 62 3 0 6 66 84 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 10 68 87 -2.481 -0.353 -4.719 0.000 0.000 0.000 0.000 [ MATR 21 ] - 63 - A - - MR 63 62 3 65 3 1 9 66 85 -8.506 -0.017 -6.824 1.336 -1.694 -0.465 -1.178 D 64 62 3 65 3 0 5 65 83 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 9 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 62 - A - - MR 66 65 3 68 3 1 8 65 84 -8.506 -0.017 -6.824 1.781 -2.699 -2.298 -2.274 D 67 65 3 68 3 0 5 64 82 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 61 - G - - MR 69 68 3 71 3 1 7 64 83 -8.506 -0.017 -6.824 -0.227 -1.986 1.331 -1.405 D 70 68 3 71 3 0 4 63 81 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 60 - C - - MR 72 71 3 74 3 1 6 63 82 -8.506 -0.017 -6.824 -2.137 1.716 -2.968 -1.471 D 73 71 3 74 3 0 4 62 81 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 6 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 59 - A - - MR 75 74 3 77 3 1 6 62 81 -8.506 -0.328 -2.316 1.781 -2.699 -2.298 -2.274 D 76 74 3 77 3 0 3 61 80 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 7 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 58 - a - - MR 78 77 3 80 3 1 6 62 80 -8.198 -0.021 -6.516 0.866 -1.246 0.170 -0.664 D 79 77 3 80 3 0 2 60 79 -7.863 -0.393 -2.093 IR 80 80 3 80 3 1 5 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 57 - A - - MR 81 80 3 83 3 1 6 60 79 -8.506 -0.017 -6.824 1.781 -2.699 -2.298 -2.274 D 82 80 3 83 3 0 1 59 78 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 5 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 56 - U - - MR 84 83 3 86 3 1 5 59 78 -8.506 -0.017 -6.824 -0.272 -1.033 -1.476 1.216 D 85 83 3 86 3 0 0 58 77 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 4 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 55 - C - - MR 87 86 3 89 3 1 5 58 77 -8.506 -0.017 -6.824 -2.137 1.716 -2.968 -1.471 D 88 86 3 89 3 0 0 57 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 54 - C - - MR 90 89 3 92 3 1 4 57 76 -8.506 -0.017 -6.824 -0.289 1.119 -1.662 -0.528 D 91 89 3 92 3 0 0 56 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 3 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 53 - A - - MR 93 92 3 95 3 1 4 56 75 -8.506 -0.017 -6.824 1.781 -2.699 -2.298 -2.274 D 94 92 3 95 3 0 0 55 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 52 - U - - MR 96 95 3 98 3 1 3 55 74 -8.506 -0.017 -6.824 -1.789 -1.733 -2.536 1.695 D 97 95 3 98 3 0 0 54 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 51 - G - - MR 99 98 3 101 3 1 3 54 73 -8.506 -0.017 -6.824 0.237 -1.720 1.044 -1.136 D 100 98 3 101 3 0 0 53 72 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 2 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 50 - A - - MR 102 101 3 104 3 1 3 53 72 -8.506 -0.017 -6.824 1.781 -2.699 -2.298 -2.274 D 103 101 3 104 3 0 0 52 71 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 49 - C - - MR 105 104 3 107 3 1 2 52 71 -8.506 -0.017 -6.824 -2.137 1.716 -2.968 -1.471 D 106 104 3 107 3 0 0 51 69 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 48 - G - - MR 108 107 3 110 3 1 2 51 70 -8.506 -0.017 -6.824 -1.922 -3.192 1.790 -2.579 D 109 107 3 110 3 0 0 50 68 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 47 - C - - MR 111 110 3 113 3 1 2 50 69 -8.506 -0.017 -6.824 -2.137 1.716 -2.968 -1.471 D 112 110 3 113 3 0 0 49 68 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 46 - G - - MR 114 113 3 116 3 1 1 49 68 -8.506 -0.194 -3.020 -1.922 -3.192 1.790 -2.579 D 115 113 3 116 3 0 0 48 67 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 45 - U - - MR 117 116 3 119 3 1 1 48 67 -2.743 -0.250 -6.648 -0.051 -0.861 -1.237 1.043 D 118 116 3 119 3 0 0 47 66 -7.432 -0.560 -1.662 IR 119 119 3 119 3 1 1 49 67 -2.481 -0.353 -4.719 0.000 0.000 0.000 0.000 [ MATR 40 ] - 43 - A - - MR 120 119 3 122 3 1 1 47 66 -8.506 -0.017 -6.824 1.336 -1.694 -0.465 -1.178 D 121 119 3 122 3 0 0 46 64 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 42 - A - - MR 123 122 3 125 5 1 1 46 65 -7.235 -0.035 -7.050 -7.263 -8.154 1.781 -2.699 -2.298 -2.274 D 124 122 3 125 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 9 41 u g - - MP 126 125 3 130 6 2 2 45 64 -9.176 -9.115 -0.020 -7.892 -8.171 -8.566 -4.204 -4.241 -3.908 -0.551 -2.630 -4.311 2.210 -3.427 -3.959 -0.370 -4.249 -2.350 0.836 -4.261 2.837 -2.821 ML 127 125 3 130 6 1 1 44 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 44 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 10 40 G C - - MP 132 131 6 136 6 2 2 43 62 -9.176 -9.115 -0.020 -7.892 -8.171 -8.566 -4.183 -2.818 -4.198 1.266 -4.843 -4.620 -0.219 -4.556 -4.068 3.385 -4.447 -0.456 -0.525 -4.098 -2.222 -3.090 ML 133 131 6 136 6 1 1 42 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 42 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 11 39 G C - - MP 138 137 6 142 6 2 2 41 60 -9.176 -9.115 -0.020 -7.892 -8.171 -8.566 -5.060 -3.247 -5.196 -0.016 -5.680 -4.815 -0.965 -5.456 -4.529 3.706 -4.845 -0.960 -1.342 -4.675 -3.020 -4.068 ML 139 137 6 142 6 1 1 40 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 12 38 u g - - MP 144 143 6 148 6 2 2 39 58 -9.176 -9.115 -0.020 -7.892 -8.171 -8.566 -3.760 -3.772 -3.626 -0.115 -2.567 -4.169 2.120 -3.290 -3.654 0.075 -4.032 -1.863 1.737 -3.900 2.361 -2.553 ML 145 143 6 148 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 36 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 13 37 G C - - MP 150 149 6 154 6 2 2 37 56 -9.176 -9.115 -0.020 -7.892 -8.171 -8.566 -5.060 -3.247 -5.196 -0.016 -5.680 -4.815 -0.965 -5.456 -4.529 3.706 -4.845 -0.960 -1.342 -4.675 -3.020 -4.068 ML 151 149 6 154 6 1 1 37 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 37 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 14 36 c g - - MP 156 155 6 160 4 2 2 35 54 -7.121 -7.328 -0.047 -5.742 -3.601 -3.283 -3.559 0.447 -2.754 -4.247 2.821 -3.346 -3.559 1.692 -3.996 -1.111 1.097 -3.761 -0.392 -2.420 ML 157 155 6 160 4 1 1 36 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 37 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 15 - G - - - ML 162 161 6 164 3 1 1 32 51 -8.506 -0.017 -6.824 -1.922 -3.192 1.790 -2.579 D 163 161 6 164 3 0 0 31 49 -5.620 -0.734 -1.403 IL 164 164 3 164 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 35 - a - - MR 165 164 3 167 5 1 1 31 50 -7.235 -0.035 -7.050 -7.263 -8.154 0.695 -0.358 -1.060 0.165 D 166 164 3 167 5 0 0 30 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 167 167 3 167 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 16 34 G C - - MP 168 167 3 172 6 2 2 30 49 -9.176 -9.115 -0.020 -7.892 -8.171 -8.566 -5.060 -3.247 -5.196 -0.016 -5.680 -4.815 -0.965 -5.456 -4.529 3.706 -4.845 -0.960 -1.342 -4.675 -3.020 -4.068 ML 169 167 3 172 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 3 172 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 3 172 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 17 33 c g - - MP 174 173 6 178 6 2 2 28 47 -9.176 -9.115 -0.020 -7.892 -8.171 -8.566 -3.413 -3.236 -3.410 0.498 -2.604 -4.123 2.734 -3.212 -3.408 1.416 -3.871 -1.147 1.419 -3.591 0.089 -2.284 ML 175 173 6 178 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 18 32 G C - - MP 180 179 6 184 6 2 2 26 44 -9.176 -9.115 -0.020 -7.892 -8.171 -8.566 -3.534 -0.441 -3.531 1.484 -4.110 -4.186 0.257 -3.974 -3.645 3.059 -4.041 -0.198 -0.005 -3.508 -1.648 -2.516 ML 181 179 6 184 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 184 184 5 184 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 19 31 C G - - MP 186 185 6 190 6 2 2 24 42 -9.176 -9.115 -0.134 -7.892 -8.171 -3.694 -4.007 -3.993 -3.804 -0.241 -2.616 -4.294 3.105 -3.375 -3.826 -0.047 -4.170 -2.014 0.989 -4.108 1.324 -2.686 ML 187 185 6 190 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 190 190 5 190 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 20 30 c g - - MP 192 191 6 196 4 2 2 22 41 -1.861 -7.038 -0.526 -5.452 -3.205 -2.977 -3.214 0.697 -2.514 -3.936 2.473 -3.083 -3.229 1.566 -3.693 -0.895 1.694 -3.380 -0.181 -2.119 ML 193 191 6 196 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 195 191 6 196 4 0 0 18 37 -5.731 -5.412 -0.630 -1.683 IL 196 196 5 196 4 1 1 22 40 -1.977 -0.899 -2.359 -6.096 0.000 0.000 0.000 0.000 IR 197 197 6 197 3 1 1 20 38 -1.711 -0.693 -3.720 0.000 0.000 0.000 0.000 [ MATL 55 ] 23 - c - - - ML 198 197 6 200 3 1 1 17 36 -8.086 -0.019 -6.740 -0.107 0.357 -0.065 -0.262 D 199 197 6 200 3 0 0 17 35 -6.530 -2.043 -0.422 IL 200 200 3 200 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 24 - u - - - ML 201 200 3 203 3 1 1 16 35 -8.086 -0.019 -6.740 0.207 -0.263 -1.090 0.625 D 202 200 3 203 3 0 0 15 34 -6.530 -1.116 -0.922 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 25 - u - - - ML 204 203 3 206 3 1 1 15 33 -8.125 -0.018 -6.779 0.058 -0.006 -0.330 0.224 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 26 - a - - - ML 207 206 3 209 3 1 1 13 31 -8.125 -0.404 -2.055 0.653 -0.478 -0.222 -0.231 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 27 - A - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 1.605 -1.936 -1.612 -1.439 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME sucC ACC RF01759 DESC sucC RNA LENG 70 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 22:23:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01759/CM NSEQ 18 EFFN 3.080566 CKSUM 1059023631 STATS LOCAL MSV -8.1941 0.71888 STATS LOCAL VITERBI -9.2823 0.71888 STATS LOCAL FORWARD -3.2541 0.71888 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25994 1.41536 1.20642 1.74742 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 0.00000 * 1 1.60120 2.95346 0.40156 2.56513 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 2 2.92072 2.83291 3.44881 0.15609 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 3 2.14422 0.51174 1.99937 1.91074 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 4 0.10918 3.56592 3.25923 3.30383 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 5 2.38624 0.46043 2.98674 1.48475 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 6 0.44393 1.88297 2.46784 2.10713 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 7 2.02172 2.01954 0.46741 2.22344 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 8 3.02811 3.94669 0.10245 3.51838 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 9 3.14545 1.22530 2.97261 0.49084 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 10 1.79933 2.97020 0.32144 2.84399 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 11 2.79453 3.56049 0.12768 3.49661 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 12 2.81142 1.28069 2.60667 0.53059 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 13 2.79546 3.56175 0.12752 3.49832 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 14 2.38673 0.70980 1.44909 1.70626 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 15 3.02811 3.94669 0.10245 3.51838 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 16 2.79865 3.56603 0.12696 3.50415 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 17 2.30883 0.78315 1.61423 1.40808 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 18 1.42805 2.59318 0.51341 2.44198 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 19 2.90876 0.52887 2.69704 1.24209 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.26140 4.12200 1.54263 1.46634 0.26236 1.09861 0.40547 20 2.13971 0.96467 1.50006 1.27984 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.40322 1.16594 3.90185 0.23420 1.56639 0.14119 2.02742 21 1.50528 1.08769 1.40044 1.63700 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.06601 4.12200 3.04359 1.46634 0.26236 1.09861 0.40547 22 1.23958 1.56855 2.20559 0.93659 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09005 4.09005 1.46634 0.26236 0.51896 0.90422 23 1.36154 1.36632 1.60821 1.24325 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 24 0.91181 1.72052 1.53522 1.59050 26 a - - _ 1.38629 1.38629 1.38629 1.38629 0.13477 4.12200 2.20842 1.46634 0.26236 1.09861 0.40547 25 0.20950 2.96453 2.71600 2.64103 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.44429 2.09713 1.44428 0.47585 0.97117 0.25859 1.47902 26 1.46929 1.62066 0.85906 1.90661 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.04125 3.90185 3.90185 1.46634 0.26236 0.14119 2.02742 27 2.08861 2.85979 0.28820 2.67008 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 28 2.69060 0.51090 2.40313 1.41976 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 29 1.69593 1.72591 0.66722 2.07604 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 30 3.71431 0.15026 3.41954 2.49601 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 31 0.87234 1.63889 2.19299 1.28645 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 32 1.95277 1.54279 0.64101 2.14065 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 33 3.68285 0.15229 3.40478 2.49018 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 34 1.48887 2.76894 0.45252 2.58199 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 35 3.68917 0.15188 3.40776 2.49136 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 36 3.08200 0.36739 2.79320 1.60761 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 37 2.21841 3.13876 0.23053 2.92311 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 38 0.10918 3.56592 3.25923 3.30383 42 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 39 0.40929 2.73116 1.71891 2.39171 43 A - - : 1.38629 1.38629 1.38629 1.38629 0.40200 1.73691 1.86462 0.17496 1.82938 1.09861 0.40547 40 1.45252 2.07514 2.34862 0.60701 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.03837 3.97264 3.97264 1.46634 0.26236 0.19000 1.75423 41 3.02811 3.94669 0.10245 3.51838 46 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 42 3.24039 0.13678 3.81082 2.70963 47 C - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 43 3.02811 3.94669 0.10245 3.51838 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 44 3.24039 0.13678 3.81082 2.70963 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 45 0.10918 3.56592 3.25923 3.30383 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 46 1.23094 2.74591 0.60035 2.35208 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 47 2.92072 2.83291 3.44881 0.15609 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 48 0.10918 3.56592 3.25923 3.30383 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 49 1.65693 0.52424 2.72741 1.88465 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 50 3.24039 0.13678 3.81082 2.70963 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 51 1.62815 2.22745 2.55066 0.48147 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 52 0.10918 3.56592 3.25923 3.30383 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.30960 4.12200 1.38610 1.46634 0.26236 1.09861 0.40547 53 0.74767 2.35378 1.23817 1.95468 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.04324 3.85564 3.85564 1.46634 0.26236 0.12193 2.16468 54 0.10918 3.56592 3.25923 3.30383 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 55 3.24039 0.13678 3.81082 2.70963 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 56 1.60120 2.95346 0.40156 2.56513 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 57 0.10918 3.56592 3.25923 3.30383 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 58 0.40929 2.73116 1.71891 2.39171 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.21353 1.73691 4.12200 0.17496 1.82938 1.09861 0.40547 59 1.39442 2.83097 0.50104 2.43991 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 60 0.10918 3.56592 3.25923 3.30383 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 61 3.24039 0.13678 3.81082 2.70963 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 62 3.02811 3.94669 0.10245 3.51838 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 63 3.02811 3.94669 0.10245 3.51838 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 64 2.92072 2.83291 3.44881 0.15609 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.26140 1.54263 4.12200 0.14530 2.00073 1.09861 0.40547 65 0.56425 2.63191 1.36654 2.26065 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 66 0.10918 3.56592 3.25923 3.30383 73 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 67 1.11896 1.46363 1.67370 1.36872 74 a - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 68 0.44393 1.88297 2.46784 2.10713 75 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 69 0.44393 1.88297 2.46784 2.10713 76 A - - : 1.38629 1.38629 1.38629 1.38629 0.03296 4.12200 4.12200 1.46634 0.26236 1.09861 0.40547 70 1.60120 2.95346 0.40156 2.56513 77 G - - : 1.38629 1.38629 1.38629 1.38629 0.01662 4.10566 * 1.46634 0.26236 0.00000 * //