INFERNAL1/a [1.1.5 | Sep 2023] NAME psbNH ACC RF01753 DESC psbNH RNA STATES 184 NODES 50 CLEN 60 W 74 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 00:18:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01753/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 5.032104 CKSUM 770814389 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 51.70 NC 39.60 EFP7GF -12.4347 0.71912 ECMLC 0.60459 -10.20140 0.40183 1600000 729919 0.001644 ECMGC 0.40654 -19.90369 -5.64817 1600000 131514 0.003042 ECMLI 0.63404 -8.17237 1.41509 1600000 523821 0.002291 ECMGI 0.44015 -15.51469 -3.01605 1600000 98003 0.004082 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 94 -7.860 -8.067 -0.028 -6.481 IL 1 1 2 1 4 1 19 79 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 78 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 19 74 94 -8.827 -0.011 -7.481 -3.212 -4.620 1.921 -3.954 D 4 2 3 5 3 0 12 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 18 73 93 -8.827 -0.011 -7.481 -0.860 -3.097 1.662 -2.579 D 7 5 3 8 3 0 11 72 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 76 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 17 72 92 -8.827 -0.011 -7.481 -1.654 -2.564 1.571 -0.885 D 10 8 3 11 3 0 10 71 91 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 16 71 91 -8.827 -0.011 -7.481 -1.584 -1.759 -1.184 1.551 D 13 11 3 14 3 0 9 70 89 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 16 70 90 -8.827 -0.011 -7.481 -0.940 -1.650 1.382 -0.852 D 16 14 3 17 3 0 8 69 88 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 14 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 15 69 88 -8.827 -0.011 -7.481 0.718 -1.378 0.139 -0.202 D 19 17 3 20 3 0 7 68 87 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 1 14 68 87 -8.827 -0.011 -7.481 0.512 -1.246 0.083 0.128 D 22 20 3 23 3 0 6 67 86 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 12 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 1 13 67 86 -8.827 -0.011 -7.481 0.090 -1.233 0.294 0.361 D 25 23 3 26 3 0 5 66 85 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 12 66 85 -8.827 -0.011 -7.481 -1.401 -1.753 -1.729 1.596 D 28 26 3 29 3 0 5 65 84 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 10 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 12 65 84 -8.827 -0.011 -7.481 -0.637 -1.360 0.356 0.755 D 31 29 3 32 3 0 5 64 83 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 9 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 11 64 83 -8.827 -0.011 -7.481 1.133 0.085 -1.826 -1.109 D 34 32 3 35 3 0 4 63 82 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 8 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 10 63 82 -8.827 -0.011 -7.481 1.634 -2.397 -1.247 -1.813 D 37 35 3 38 3 0 4 62 81 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 8 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 9 62 81 -8.827 -0.011 -7.481 -3.212 -4.620 1.921 -3.954 D 40 38 3 41 3 0 3 61 80 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 7 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 9 61 80 -8.827 -0.011 -7.481 -2.009 -0.837 -2.769 1.606 D 43 41 3 44 3 0 3 60 79 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 6 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 45 44 3 47 3 1 8 60 79 -8.827 -0.011 -7.481 -0.563 1.214 -1.501 -0.621 D 46 44 3 47 3 0 2 59 78 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 7 59 78 -8.827 -0.011 -7.481 -1.703 -0.056 -2.500 1.353 D 49 47 3 50 3 0 2 58 77 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 5 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - g - - - ML 51 50 3 53 3 1 7 58 77 -8.827 -0.011 -7.481 -0.307 0.176 0.556 -0.757 D 52 50 3 53 3 0 1 57 76 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 5 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 6 57 76 -8.827 -0.011 -7.481 -1.632 -1.367 1.610 -2.078 D 55 53 3 56 3 0 1 56 75 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 5 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 6 56 75 -8.827 -0.011 -7.481 1.605 -1.130 -2.214 -1.806 D 58 56 3 59 3 0 0 54 74 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 4 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 6 55 74 -8.827 -0.011 -7.481 -3.095 -2.836 -3.876 1.878 D 61 59 3 62 3 0 0 53 73 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 4 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 5 54 72 -8.827 -0.011 -7.481 1.918 -4.048 -3.538 -3.748 D 64 62 3 65 3 0 0 52 72 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 3 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 5 52 71 -8.827 -0.011 -7.481 -3.697 1.900 -4.430 -2.794 D 67 65 3 68 3 0 0 51 70 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 4 51 70 -8.827 -0.011 -7.481 -3.095 -2.836 -3.876 1.878 D 70 68 3 71 3 0 0 50 69 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 2 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 4 50 69 -8.827 -0.011 -7.481 -2.039 -2.243 1.757 -2.595 D 73 71 3 74 3 0 0 49 68 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 3 49 68 -8.827 -0.011 -7.481 -3.095 -2.836 -3.876 1.878 D 76 74 3 77 3 0 0 48 67 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 3 48 67 -9.174 -0.011 -7.492 1.918 -4.048 -3.538 -3.748 D 79 77 3 80 3 0 0 47 66 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 61 - C - - MR 81 80 3 83 3 1 2 47 66 -9.174 -0.011 -7.492 -2.818 1.807 -2.902 -2.146 D 82 80 3 83 3 0 0 46 64 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 60 - U - - MR 84 83 3 86 3 1 2 46 65 -9.174 -0.011 -7.492 -2.266 -1.446 -3.014 1.723 D 85 83 3 86 3 0 0 45 63 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 59 - G - - MR 87 86 3 89 5 1 1 45 64 -7.871 -0.023 -7.686 -7.898 -8.790 -3.212 -4.620 1.921 -3.954 D 88 86 3 89 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 1 46 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 58 G U - - MP 90 89 3 94 6 2 2 44 63 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -4.593 -3.246 -4.796 1.983 -6.523 -7.221 -1.991 -4.833 -4.365 0.158 -4.976 3.314 -2.081 -5.870 -3.877 -3.410 ML 91 89 3 94 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 43 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 44 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 28 57 G C - - MP 96 95 6 100 6 2 2 42 61 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -5.208 -3.433 -5.241 -0.165 -6.026 -4.938 -1.201 -5.759 -4.848 3.654 -5.108 -1.181 -1.508 -0.222 -3.240 -4.200 ML 97 95 6 100 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 29 56 G C - - MP 102 101 6 106 6 2 2 40 59 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -5.509 -3.552 -5.593 -0.362 -6.407 -5.010 -1.478 -6.113 -4.986 3.760 -5.227 -1.319 -1.788 -1.997 -3.550 -4.547 ML 103 101 6 106 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 30 55 G U - - MP 108 107 6 112 6 2 2 38 57 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -4.254 -2.607 -4.799 0.324 -6.104 -5.420 -1.467 -4.572 1.192 0.096 -4.248 3.344 -1.886 -5.309 -3.439 -3.262 ML 109 107 6 112 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 54 u a - - MP 114 113 6 118 4 2 2 36 55 -7.860 -8.067 -0.676 -1.449 -4.612 -4.676 -4.392 -0.961 2.144 -4.858 2.083 -3.953 -4.423 -0.848 -4.757 -2.779 2.360 -4.713 -0.876 -3.297 ML 115 113 6 118 4 1 1 38 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - C - - - ML 120 119 6 122 3 1 1 34 52 -8.225 -0.017 -6.879 -1.839 1.599 -2.684 -0.899 D 121 119 6 122 3 0 0 32 50 -8.925 -4.438 -0.071 IL 122 122 3 122 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - a - - - ML 123 122 3 125 5 1 1 33 51 -7.324 -0.033 -7.139 -7.351 -8.243 0.761 0.245 -1.284 -0.496 D 124 122 3 125 5 0 0 32 50 -7.039 -0.154 -6.300 -4.675 -4.588 IL 125 125 3 125 5 1 1 33 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 34 53 C G - - MP 126 125 3 130 6 2 2 32 50 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -4.715 -4.682 -4.479 -0.780 -3.190 -4.960 3.216 -3.968 -4.478 -0.613 -4.817 -2.592 1.438 -4.797 1.037 -3.293 ML 127 125 3 130 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 35 52 g c - - MP 132 131 6 136 6 2 2 30 48 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -4.176 -2.873 -4.116 1.865 -5.177 -4.907 -0.436 -4.601 -4.253 2.950 -4.635 1.296 -0.680 -4.151 -2.413 -3.011 ML 133 131 6 136 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 36 51 g c - - MP 138 137 6 142 6 2 2 28 46 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -4.140 -2.867 -4.087 2.231 -5.120 -4.927 -0.418 -4.556 -4.220 2.850 -4.616 0.918 -0.661 -4.151 -2.387 -2.980 ML 139 137 6 142 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 37 50 C G - - MP 144 143 6 148 6 2 2 26 44 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -4.733 -4.700 -4.491 -0.793 -3.194 -4.968 3.243 -3.975 -4.490 -0.626 -4.827 -2.608 1.437 -4.812 0.919 -3.303 ML 145 143 6 148 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 38 49 c g - - MP 150 149 6 154 6 2 2 24 42 -9.526 -9.465 -0.016 -8.241 -8.521 -8.916 -5.094 -5.160 -4.708 -1.321 -3.282 -5.051 2.974 -4.118 -4.749 -1.191 -5.005 -3.211 0.548 -5.098 2.398 -3.567 ML 151 149 6 154 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 39 48 C G - - MP 156 155 6 160 6 2 2 22 40 -9.526 -9.465 -0.108 -8.241 -8.521 -3.977 -6.017 -6.100 -5.509 -2.268 -0.617 -5.758 3.781 -4.998 -5.653 -2.149 -5.731 -4.174 -0.677 -6.009 -1.830 -4.468 ML 157 155 6 160 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 40 47 c g - - MP 162 161 6 166 4 2 2 20 38 -7.684 -7.891 -0.391 -2.129 -3.772 -3.494 -3.762 0.319 -2.952 -4.497 2.651 -3.546 -3.753 1.861 -4.219 -1.307 1.536 -3.929 -0.552 -2.586 ML 163 161 6 166 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 19 37 -5.769 -2.859 -0.887 -1.721 IL 166 166 5 166 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 21 39 -1.572 -0.709 -4.272 0.000 0.000 0.000 0.000 [ MATL 44 ] 41 - G - - - ML 168 167 6 170 3 1 1 17 35 -8.534 -0.014 -7.188 -0.345 -1.967 1.325 -1.149 D 169 167 6 170 3 0 0 16 35 -8.206 -0.266 -2.597 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 42 - g - - - ML 171 170 3 173 3 1 1 16 34 -8.827 -0.011 -7.481 -0.199 -0.761 0.807 -0.342 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - a - - - ML 174 173 3 176 3 1 1 14 33 -8.827 -0.157 -3.309 0.787 -1.375 -1.562 0.633 D 175 173 3 176 3 0 0 14 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 44 - U - - - ML 177 176 3 179 3 1 1 13 31 -8.682 -0.012 -7.336 -0.873 -1.672 -2.280 1.553 D 178 176 3 179 3 0 0 12 31 -7.554 -3.067 -0.192 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 45 - c - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 0.353 0.564 -0.852 -0.534 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME psbNH ACC RF01753 DESC psbNH RNA LENG 60 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 5 00:18:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01753/CM NSEQ 39 EFFN 6.784058 CKSUM 770814389 STATS LOCAL MSV -7.9411 0.71912 STATS LOCAL VITERBI -8.4241 0.71912 STATS LOCAL FORWARD -3.6136 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.67336 1.50641 1.11160 1.34076 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 0.00000 * 1 3.94652 4.95777 0.03867 4.45828 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 2 2.04453 3.79838 0.20279 3.45128 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 3 2.80319 3.45644 0.25213 2.03489 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 4 2.77574 2.85226 2.24126 0.25662 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 5 2.17768 2.64328 0.37466 2.05535 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 6 0.86001 2.48038 1.26081 1.56205 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 7 1.01438 2.37136 1.30243 1.30140 7 a - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 8 1.34118 2.36552 1.14118 1.12356 8 u - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 9 2.54958 2.83133 2.68549 0.22971 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 10 1.95551 2.49377 1.08665 0.82425 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 11 0.54670 1.28497 2.90356 2.41176 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 12 0.21741 3.27768 2.30765 2.84401 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 13 3.94652 4.95777 0.03867 4.45828 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 14 3.07654 2.01385 3.60254 0.23174 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 15 1.85003 0.47911 2.52386 1.94291 15 C - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 16 2.86089 1.41558 3.42184 0.40445 16 U - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 17 1.68071 1.21754 0.93205 2.08703 17 g - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 18 2.78750 2.34318 0.22496 3.12692 18 G - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 19 0.23224 2.19029 3.18501 2.91911 19 A - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 20 3.90397 3.68073 4.45159 0.05872 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 21 0.03859 4.57313 4.20128 4.37809 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 22 4.32864 0.04782 4.77695 3.68528 22 C - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 23 3.90397 3.68073 4.45159 0.05872 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 24 3.08029 3.00219 0.13523 3.47838 24 G - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 25 3.90397 3.68073 4.45159 0.05872 25 U - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 26 0.03859 4.57313 4.20128 4.37809 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 27 1.37591 4.27348 0.33756 3.91463 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 28 3.07030 3.88081 0.16397 2.47466 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 29 3.18114 4.02786 0.09962 3.33916 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 30 2.60603 4.00501 0.12155 3.79848 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 31 3.59092 0.55891 3.42509 0.99955 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.47595 4.60355 0.99780 1.46634 0.26236 1.09861 0.40547 32 2.99839 0.20874 3.58847 2.19928 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.03173 4.15934 4.15934 1.46634 0.26236 3.65865 0.02610 33 0.81201 1.16396 2.42470 1.86250 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.03173 4.15934 4.15934 1.46634 0.26236 0.05291 2.96551 34 3.37849 0.47528 3.17282 1.19632 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 35 1.39020 3.12973 0.42321 2.95075 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 36 1.12250 3.13081 0.54737 2.94920 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 37 3.38739 0.45553 3.18126 1.23594 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 38 3.76466 0.66878 3.61524 0.82650 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 39 4.27007 0.08370 4.16376 2.98057 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.15466 4.60355 2.01534 1.46634 0.26236 1.09861 0.40547 40 2.52591 0.84247 1.34414 1.47577 40 c - - < 1.38629 1.38629 1.38629 1.38629 0.28032 4.47201 1.45657 1.46634 0.26236 0.14003 2.03509 41 1.68834 2.93698 0.41012 2.31691 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02518 4.38751 4.38751 1.46634 0.26236 0.09353 2.41583 42 1.57834 1.94327 0.76510 1.68652 42 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 43 0.79813 2.52374 2.65119 0.91854 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.13176 4.60355 2.17653 1.46634 0.26236 1.09861 0.40547 44 2.08634 2.78230 3.23831 0.25524 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02260 4.49438 4.49438 1.46634 0.26236 2.58965 0.07801 45 1.13169 0.93335 2.02260 1.88411 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.13516 4.49438 2.16067 1.46634 0.26236 0.16263 1.89650 46 1.63915 1.41428 0.77442 2.28492 47 g - - > 1.38629 1.38629 1.38629 1.38629 0.02234 4.50559 4.50559 1.46634 0.26236 0.17720 1.81777 47 2.48493 4.30261 0.12122 4.05746 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 48 2.46351 3.75947 0.14851 3.52071 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 49 1.76184 3.34011 0.28817 3.14185 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 50 3.17920 0.77434 2.92626 0.81244 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 51 3.16935 0.70231 2.92055 0.89495 52 c - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 52 1.75547 3.30550 0.29361 3.10277 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 53 0.42407 3.58233 1.26261 3.35528 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 54 1.76311 2.83362 3.79046 0.29155 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 55 4.13564 0.09742 3.88151 2.87863 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 56 4.00274 0.11077 3.72771 2.77188 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 57 4.10698 2.84209 4.04230 0.09686 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 58 3.94652 4.95777 0.03867 4.45828 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 59 3.24224 2.49027 3.75830 0.15699 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.02024 4.60355 4.60355 1.46634 0.26236 1.09861 0.40547 60 3.70722 0.09828 3.52462 3.22909 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.01017 4.59348 * 1.46634 0.26236 0.00000 * //