INFERNAL1/a [1.1.4 | Dec 2020] NAME psbNH ACC RF01753 DESC psbNH RNA STATES 184 NODES 50 CLEN 60 W 74 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:39:39 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 5.041626 CKSUM 770814389 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 47.00 NC 31.10 EFP7GF -12.4602 0.71912 ECMLC 0.61016 -10.10863 0.39734 1600000 729692 0.001645 ECMGC 0.41248 -19.69588 -5.64889 1600000 131350 0.003045 ECMLI 0.63518 -8.17083 1.40569 1600000 525932 0.002282 ECMGI 0.44473 -15.36622 -3.00816 1600000 97490 0.004103 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 94 -7.862 -8.069 -0.028 -6.483 IL 1 1 2 1 4 1 19 79 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 78 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 19 74 94 -8.829 -0.011 -7.483 -3.215 -4.624 1.921 -3.957 D 4 2 3 5 3 0 12 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 18 73 93 -8.829 -0.011 -7.483 -0.913 -3.133 1.674 -2.614 D 7 5 3 8 3 0 11 72 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 76 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 17 72 92 -8.829 -0.011 -7.483 -1.686 -2.604 1.586 -0.937 D 10 8 3 11 3 0 10 71 90 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 16 71 91 -8.829 -0.011 -7.483 -1.608 -1.772 -1.229 1.562 D 13 11 3 14 3 0 9 70 89 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 16 70 89 -8.829 -0.011 -7.483 -0.911 -1.612 1.343 -0.726 D 16 14 3 17 3 0 8 69 88 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 14 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 15 69 88 -8.829 -0.011 -7.483 0.704 -1.393 0.186 -0.231 D 19 17 3 20 3 0 7 68 87 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 1 14 68 87 -8.829 -0.011 -7.483 0.545 -1.253 0.063 0.107 D 22 20 3 23 3 0 6 67 86 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 12 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 1 13 67 86 -8.829 -0.011 -7.483 0.129 -1.234 0.285 0.336 D 25 23 3 26 3 0 5 66 85 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 12 66 85 -8.829 -0.011 -7.483 -1.422 -1.763 -1.756 1.602 D 28 26 3 29 3 0 5 65 84 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 10 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 12 65 84 -8.829 -0.011 -7.483 -0.649 -1.358 0.308 0.794 D 31 29 3 32 3 0 5 64 83 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 9 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 11 64 83 -8.829 -0.011 -7.483 1.140 0.076 -1.830 -1.116 D 34 32 3 35 3 0 4 63 82 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 8 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 10 63 82 -8.829 -0.011 -7.483 1.640 -2.414 -1.264 -1.837 D 37 35 3 38 3 0 4 62 81 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 8 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 39 38 3 41 3 1 9 62 81 -8.829 -0.011 -7.483 -3.215 -4.624 1.921 -3.957 D 40 38 3 41 3 0 3 61 80 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 7 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 9 61 80 -8.829 -0.011 -7.483 -2.029 -0.878 -2.787 1.616 D 43 41 3 44 3 0 3 60 79 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 6 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 45 44 3 47 3 1 8 60 79 -8.829 -0.011 -7.483 -0.610 1.240 -1.543 -0.644 D 46 44 3 47 3 0 2 59 78 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 6 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 8 59 78 -8.829 -0.011 -7.483 -1.713 -0.077 -2.508 1.362 D 49 47 3 50 3 0 2 58 77 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 5 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - g - - - ML 51 50 3 53 3 1 7 58 77 -8.829 -0.011 -7.483 -0.319 0.220 0.523 -0.746 D 52 50 3 53 3 0 1 57 76 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 5 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 54 53 3 56 3 1 6 57 76 -8.829 -0.011 -7.483 -1.656 -1.417 1.621 -2.110 D 55 53 3 56 3 0 1 55 75 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 5 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 6 56 75 -8.829 -0.011 -7.483 1.616 -1.178 -2.236 -1.837 D 58 56 3 59 3 0 0 54 74 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 4 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 6 55 73 -8.829 -0.011 -7.483 -3.098 -2.839 -3.879 1.878 D 61 59 3 62 3 0 0 53 73 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 4 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 5 53 72 -8.829 -0.011 -7.483 1.918 -4.051 -3.541 -3.752 D 64 62 3 65 3 0 0 52 71 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 3 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 5 52 71 -8.829 -0.011 -7.483 -3.701 1.900 -4.433 -2.798 D 67 65 3 68 3 0 0 51 70 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 4 51 70 -8.829 -0.011 -7.483 -3.098 -2.839 -3.879 1.878 D 70 68 3 71 3 0 0 50 69 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 2 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 4 50 69 -8.829 -0.011 -7.483 -2.049 -2.260 1.759 -2.607 D 73 71 3 74 3 0 0 49 68 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 75 74 3 77 3 1 3 49 68 -8.829 -0.011 -7.483 -3.098 -2.839 -3.879 1.878 D 76 74 3 77 3 0 0 48 67 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 2 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 3 48 67 -9.176 -0.011 -7.494 1.918 -4.051 -3.541 -3.752 D 79 77 3 80 3 0 0 47 66 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 61 - C - - MR 81 80 3 83 3 1 2 47 66 -9.176 -0.011 -7.494 -2.628 1.767 -2.473 -1.978 D 82 80 3 83 3 0 0 46 64 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 60 - U - - MR 84 83 3 86 3 1 2 46 65 -9.176 -0.011 -7.494 -2.278 -1.469 -3.026 1.727 D 85 83 3 86 3 0 0 45 63 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 59 - G - - MR 87 86 3 89 5 1 1 45 64 -7.873 -0.023 -7.688 -7.900 -8.792 -3.215 -4.624 1.921 -3.957 D 88 86 3 89 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 1 46 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 58 G U - - MP 90 89 3 94 6 2 2 44 63 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -4.596 -3.248 -4.801 1.950 -6.533 -7.229 -1.999 -4.836 -4.367 0.152 -4.978 3.329 -2.089 -5.878 -3.886 -3.414 ML 91 89 3 94 6 1 1 43 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 43 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 44 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 28 57 G C - - MP 96 95 6 100 6 2 2 42 61 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -5.223 -3.439 -5.257 -0.174 -6.046 -4.942 -1.215 -5.776 -4.856 3.660 -5.114 -1.188 -1.522 -0.282 -3.256 -4.216 ML 97 95 6 100 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 41 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 29 56 G C - - MP 102 101 6 106 6 2 2 40 59 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -5.521 -3.557 -5.607 -0.371 -6.420 -5.014 -1.489 -6.126 -4.991 3.762 -5.232 -1.325 -1.799 -2.034 -3.562 -4.560 ML 103 101 6 106 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 30 55 G U - - MP 108 107 6 112 6 2 2 38 57 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -4.257 -2.609 -4.802 0.322 -6.110 -5.424 -1.471 -4.575 1.185 0.093 -4.251 3.347 -1.891 -5.313 -3.443 -3.265 ML 109 107 6 112 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 54 u a - - MP 114 113 6 118 4 2 2 36 55 -7.862 -8.069 -0.652 -1.492 -4.655 -4.722 -4.421 -1.005 2.207 -4.876 2.061 -3.971 -4.454 -0.893 -4.780 -2.830 2.337 -4.748 -0.888 -3.325 ML 115 113 6 118 4 1 1 38 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - C - - - ML 120 119 6 122 3 1 1 34 52 -8.250 -0.017 -6.904 -1.650 1.508 -2.503 -0.596 D 121 119 6 122 3 0 0 32 50 -8.889 -4.402 -0.073 IL 122 122 3 122 3 1 1 37 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - a - - - ML 123 122 3 125 5 1 1 32 51 -7.345 -0.033 -7.161 -7.373 -8.265 0.713 0.319 -1.309 -0.496 D 124 122 3 125 5 0 0 31 50 -7.007 -0.157 -6.268 -4.643 -4.555 IL 125 125 3 125 5 1 1 33 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 34 53 C G - - MP 126 125 3 130 6 2 2 31 50 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -4.735 -4.704 -4.492 -0.801 -3.196 -4.968 3.230 -3.977 -4.492 -0.634 -4.828 -2.616 1.406 -4.814 1.031 -3.307 ML 127 125 3 130 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 35 52 g c - - MP 132 131 6 136 6 2 2 29 48 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -4.187 -2.875 -4.123 1.827 -5.188 -4.898 -0.437 -4.614 -4.263 2.981 -4.641 1.255 -0.683 -4.149 -2.416 -3.020 ML 133 131 6 136 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 36 51 g c - - MP 138 137 6 142 6 2 2 27 46 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -4.139 -2.871 -4.089 2.265 -5.122 -4.942 -0.426 -4.553 -4.218 2.827 -4.618 0.926 -0.667 -4.161 -2.393 -2.980 ML 139 137 6 142 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 37 50 C G - - MP 144 143 6 148 6 2 2 25 44 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -4.756 -4.725 -4.507 -0.817 -3.201 -4.976 3.262 -3.985 -4.507 -0.650 -4.840 -2.635 1.404 -4.831 0.891 -3.319 ML 145 143 6 148 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 38 49 C G - - MP 150 149 6 154 6 2 2 23 42 -9.527 -9.466 -0.016 -8.243 -8.522 -8.917 -5.094 -5.158 -4.708 -1.317 -3.283 -5.053 3.002 -4.119 -4.750 -1.187 -5.005 -3.206 0.539 -5.099 2.357 -3.567 ML 151 149 6 154 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 39 48 C G - - MP 156 155 6 160 6 2 2 21 40 -9.527 -9.466 -0.122 -8.243 -8.522 -3.796 -6.048 -6.131 -5.535 -2.298 -0.669 -5.780 3.787 -5.027 -5.683 -2.179 -5.754 -4.205 -0.705 -6.039 -1.858 -4.498 ML 157 155 6 160 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 40 47 c g - - MP 162 161 6 166 4 2 2 19 38 -7.661 -7.868 -0.389 -2.138 -3.747 -3.469 -3.739 0.338 -2.938 -4.475 2.637 -3.529 -3.731 1.861 -4.198 -1.286 1.545 -3.904 -0.540 -2.566 ML 163 161 6 166 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 19 37 -5.879 -2.271 -1.016 -1.831 IL 166 166 5 166 4 1 1 22 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 20 38 -1.662 -0.654 -4.362 0.000 0.000 0.000 0.000 [ MATL 44 ] 41 - G - - - ML 168 167 6 170 3 1 1 17 35 -8.544 -0.014 -7.198 -0.225 -1.920 1.274 -1.112 D 169 167 6 170 3 0 0 16 35 -8.180 -0.272 -2.571 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 42 - g - - - ML 171 170 3 173 3 1 1 16 34 -8.829 -0.011 -7.483 -0.187 -0.764 0.764 -0.261 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - a - - - ML 174 173 3 176 3 1 1 14 33 -8.829 -0.157 -3.308 0.824 -1.384 -1.565 0.593 D 175 173 3 176 3 0 0 14 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 44 - U - - - ML 177 176 3 179 3 1 1 13 31 -8.684 -0.012 -7.338 -0.888 -1.679 -2.291 1.557 D 178 176 3 179 3 0 0 12 31 -7.556 -3.069 -0.192 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 45 - c - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 0.398 0.527 -0.853 -0.539 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME psbNH ACC RF01753 DESC psbNH RNA LENG 60 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:39:40 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 39 EFFN 6.793579 CKSUM 770814389 STATS LOCAL MSV -7.9157 0.71912 STATS LOCAL VITERBI -8.4176 0.71912 STATS LOCAL FORWARD -3.6145 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.67051 1.50752 1.11316 1.33991 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 0.00000 * 1 3.94804 4.95947 0.03861 4.45978 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 2 2.08432 3.82374 0.19503 3.47524 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 3 2.82575 3.48444 0.24313 2.07231 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 4 2.79203 2.86115 2.27537 0.25008 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 5 2.16043 2.62313 0.39895 1.95811 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 6 0.87006 2.49331 1.22568 1.58534 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 7 0.98982 2.37660 1.31728 1.31816 7 a - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 8 1.31053 2.36491 1.14819 1.14208 8 u - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 9 2.56540 2.83830 2.70574 0.22594 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 10 1.96597 2.49274 1.12290 0.79415 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 11 0.54229 1.29203 2.90613 2.41700 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 12 0.21402 3.28970 2.32024 2.86205 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 13 3.94804 4.95947 0.03861 4.45978 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 14 3.08897 2.04571 3.61387 0.22538 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 15 1.88691 0.46169 2.55642 1.96139 15 C - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 16 2.86793 1.43117 3.42760 0.39796 16 U - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 17 1.69005 1.18473 0.95616 2.07709 17 g - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 18 2.80451 2.37990 0.21819 3.14806 18 G - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 19 0.22497 2.22680 3.19975 2.94094 19 A - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 20 3.90570 3.68229 4.45336 0.05862 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 21 0.03852 4.57490 4.20299 4.37987 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 22 4.33030 0.04774 4.77834 3.68693 22 C - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 23 3.90570 3.68229 4.45336 0.05862 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 24 3.08734 3.01468 0.13387 3.48640 24 G - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 25 3.90570 3.68229 4.45336 0.05862 25 U - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 26 0.03852 4.57490 4.20299 4.37987 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 27 1.40019 4.27585 0.32899 3.91697 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 28 3.07625 3.88876 0.16014 2.50872 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 29 3.18563 4.03356 0.09864 3.35620 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 30 2.60716 4.00661 0.12139 3.79995 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 31 3.61852 0.54458 3.45542 1.01744 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.46725 4.60546 1.01259 1.46634 0.26236 1.09861 0.40547 32 2.82972 0.26915 3.43487 1.93302 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 3.64645 0.02643 33 0.84869 1.10817 2.44541 1.86321 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.03140 4.16961 4.16961 1.46634 0.26236 0.05358 2.95330 34 3.39359 0.46534 3.18924 1.21305 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 35 1.41754 3.12621 0.41341 2.94855 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 36 1.09831 3.14035 0.55975 2.95751 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 37 3.40426 0.44257 3.19960 1.26017 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 38 3.76241 0.64812 3.61225 0.85155 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 39 4.29035 0.08175 4.18566 3.00413 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.16669 4.60546 1.94115 1.46634 0.26236 1.09861 0.40547 40 2.50833 0.85161 1.34303 1.46614 40 c - - < 1.38629 1.38629 1.38629 1.38629 0.27964 4.46211 1.45926 1.46634 0.26236 0.13041 2.10157 41 1.59488 2.90393 0.44408 2.29418 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02504 4.39304 4.39304 1.46634 0.26236 0.09466 2.40437 42 1.56789 1.94694 0.79703 1.61880 42 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 43 0.77039 2.53048 2.65378 0.94891 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.12995 4.60546 2.19050 1.46634 0.26236 1.09861 0.40547 44 2.09777 2.78702 3.24574 0.25267 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02251 4.49802 4.49802 1.46634 0.26236 2.57940 0.07885 45 1.09734 0.96048 2.02375 1.88801 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.13307 4.49802 2.17625 1.46634 0.26236 0.16445 1.88626 46 1.62993 1.41437 0.78215 2.26762 47 g - - > 1.38629 1.38629 1.38629 1.38629 0.02226 4.50904 4.50904 1.46634 0.26236 0.17915 1.80777 47 2.51906 4.32431 0.11732 4.07941 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 48 2.47053 3.75672 0.14797 3.51846 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 49 1.78753 3.35790 0.28060 3.15853 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 50 3.18687 0.79156 2.93544 0.79306 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 51 3.16786 0.67938 2.91756 0.92405 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 52 1.78062 3.32109 0.28625 3.11735 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 53 0.41394 3.61172 1.28016 3.38253 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 54 1.76818 2.83487 3.79204 0.29024 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 55 4.14118 0.09692 3.88752 2.88295 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 56 4.01034 0.10999 3.73608 2.77766 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 57 4.10923 2.84457 4.04464 0.09662 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 58 3.94804 4.95947 0.03861 4.45978 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 59 3.24976 2.50763 3.76568 0.15478 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60546 4.60546 1.46634 0.26236 1.09861 0.40547 60 3.59100 0.12002 3.18920 3.11625 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.01015 4.59541 * 1.46634 0.26236 0.00000 * //