INFERNAL1/a [1.1.5 | Sep 2023] NAME msiK ACC RF01747 DESC msiK RNA STATES 184 NODES 49 CLEN 60 W 78 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 21:38:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01747/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 120 EFFN 8.038330 CKSUM 1954512246 NULL 0.000 0.000 0.000 0.000 GA 33.00 TC 34.60 NC 32.90 EFP7GF -15.6253 0.71925 ECMLC 0.84054 -5.77184 1.47700 1600000 531286 0.002259 ECMGC 0.48983 -17.08011 -5.68774 1600000 106067 0.003771 ECMLI 0.68425 -4.70515 2.53782 1600000 170428 0.007041 ECMGI 0.54522 -13.31039 -3.55952 1600000 81456 0.004911 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 98 -8.399 -8.607 -0.085 -4.278 IL 1 1 2 1 4 1 15 81 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 14 78 98 -9.286 -0.008 -7.940 -0.303 -0.393 0.619 -0.165 D 4 2 3 5 3 0 10 77 97 -7.195 -0.713 -1.384 IL 5 5 3 5 3 1 13 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 13 77 97 -9.343 -0.008 -7.997 -0.254 -0.358 0.650 -0.300 D 7 5 3 8 3 0 9 75 96 -6.315 -1.828 -0.503 IL 8 8 3 8 3 1 13 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 12 76 96 -9.343 -0.008 -7.997 -0.077 0.130 -0.080 0.016 D 10 8 3 11 3 0 8 74 95 -6.315 -1.828 -0.503 IL 11 11 3 11 3 1 12 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 11 75 95 -9.343 -0.166 -3.224 0.210 -0.163 -0.333 0.210 D 13 11 3 14 3 0 8 73 94 -6.315 -1.828 -0.503 IL 14 14 3 14 3 1 11 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 11 74 94 -9.186 -0.017 -6.611 0.359 -0.509 0.314 -0.374 D 16 14 3 17 3 0 8 72 92 -8.015 -3.528 -0.137 IL 17 17 3 17 3 1 11 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 10 73 93 -9.177 -0.140 -3.460 0.276 -0.704 -0.235 0.407 D 19 17 3 20 3 0 8 72 92 -8.065 -3.578 -0.132 IL 20 20 3 20 3 1 10 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 1 9 72 92 -9.047 -0.167 -3.215 0.043 0.442 -0.550 -0.109 D 22 20 3 23 3 0 7 71 92 -8.650 -4.163 -0.087 IL 23 23 3 23 3 1 9 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 1 8 71 91 -2.799 -1.121 -1.335 0.249 -0.272 0.178 -0.230 D 25 23 3 26 3 0 7 71 92 -0.487 -2.443 -3.284 IL 26 26 3 26 3 1 8 72 92 -1.354 -1.049 -2.995 0.000 0.000 0.000 0.000 [ MATL 9 ] 13 - u - - - ML 27 26 3 29 3 1 6 68 88 -9.039 -1.191 -0.837 -0.459 0.084 -0.533 0.606 D 28 26 3 29 3 0 8 68 88 -8.300 -0.111 -3.816 IL 29 29 3 29 3 1 9 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 68 - a - - MR 30 29 3 32 3 1 8 68 88 -9.035 -0.012 -7.353 0.719 -0.401 -0.973 0.121 D 31 29 3 32 3 0 5 66 86 -9.482 -1.219 -0.814 IR 32 32 3 32 3 1 8 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 67 - a - - MR 33 32 3 35 3 1 7 67 87 -9.356 -0.009 -7.674 0.665 -0.529 -1.023 0.299 D 34 32 3 35 3 0 4 65 85 -8.768 -1.580 -0.593 IR 35 35 3 35 3 1 7 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 66 - a - - MR 36 35 3 38 3 1 6 66 86 -9.472 -0.009 -7.790 0.850 -0.449 -1.091 -0.007 D 37 35 3 38 3 0 3 65 84 -8.315 -0.277 -2.545 IR 38 38 3 38 3 1 6 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 65 - A - - MR 39 38 3 41 3 1 5 65 85 -9.680 -0.007 -7.998 1.225 -0.788 -1.132 -0.672 D 40 38 3 41 3 0 1 63 83 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 5 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 64 - a - - MR 42 41 3 44 3 1 4 64 84 -9.680 -0.007 -7.998 0.861 -0.712 -1.009 0.106 D 43 41 3 44 3 0 0 62 82 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 4 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 63 - a - - MR 45 44 3 47 3 1 3 63 83 -9.680 -0.007 -7.998 0.819 -0.741 -0.307 -0.270 D 46 44 3 47 3 0 0 61 81 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 62 - g - - MR 48 47 3 50 3 1 2 62 82 -9.680 -0.007 -7.998 0.381 -1.593 0.914 -1.054 D 49 47 3 50 3 0 0 60 80 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 61 - A - - MR 51 50 3 53 5 1 1 61 81 -1.224 -1.059 -8.175 -8.388 -3.549 1.116 -2.244 0.245 -1.198 D 52 50 3 53 5 0 0 57 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 3 61 80 -1.377 -0.905 -4.894 -4.548 -7.775 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 56 C G - - MP 54 53 3 58 6 2 4 57 76 -9.695 -9.634 -0.024 -6.688 -8.691 -9.086 -5.450 -5.483 -5.036 -1.554 -3.562 -5.370 3.547 -4.405 -5.067 -1.409 -5.316 -3.450 0.942 -5.434 0.268 -3.858 ML 55 53 3 58 6 1 1 55 74 -6.748 -7.094 -0.792 -1.503 -6.944 -4.474 0.098 -0.298 -0.111 0.252 MR 56 53 3 58 6 1 1 55 74 -7.455 -6.184 -0.968 -6.162 -1.296 -4.375 1.013 -0.880 -0.624 -0.342 D 57 53 3 58 6 0 0 54 73 -10.432 -9.130 -0.690 -5.609 -4.329 -1.702 IL 58 58 5 58 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 55 c g - - MP 60 59 6 64 6 2 3 55 74 -9.828 -9.767 -0.079 -4.952 -6.354 -7.318 -2.773 -4.216 -4.282 -0.350 -3.301 -4.995 2.767 -3.961 -4.238 -0.179 -4.706 -2.088 1.885 -4.498 1.534 -3.091 ML 61 59 6 64 6 1 1 53 72 -6.433 -6.779 -1.076 -1.188 -6.629 -4.158 0.701 -0.614 -0.322 -0.120 MR 62 59 6 64 6 1 1 53 72 -7.061 -5.790 -1.482 -5.769 -0.903 -3.982 0.352 -0.542 0.128 -0.082 D 63 59 6 64 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 54 u a - - MP 66 65 6 70 6 2 4 53 72 -9.776 -9.715 -0.042 -5.486 -8.771 -9.166 -3.568 -3.586 -2.695 0.016 -0.545 -4.435 2.153 -3.553 -3.638 0.122 -4.154 -1.679 2.614 -3.827 0.596 -2.602 ML 67 65 6 70 6 1 1 51 70 -6.972 -7.318 -0.648 -1.727 -7.168 -4.697 1.152 -1.039 -0.785 -0.494 MR 68 65 6 70 6 1 1 51 70 -7.239 -5.968 -1.210 -5.947 -1.080 -4.160 0.174 -0.701 0.462 -0.185 D 69 65 6 70 6 0 0 49 68 -9.223 -7.921 -2.400 -4.400 -4.417 -0.493 IL 70 70 5 70 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 53 u a - - MP 72 71 6 76 6 2 3 51 70 -9.813 -9.752 -0.169 -3.263 -8.809 -9.204 -0.754 -2.593 -2.607 0.527 0.243 -3.449 1.766 -2.832 -1.893 0.465 -3.213 -1.086 2.429 -2.755 -0.385 -1.785 ML 73 71 6 76 6 1 1 50 68 -6.748 -7.094 -0.792 -1.503 -6.944 -4.474 0.444 -0.092 -0.597 0.056 MR 74 71 6 76 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 51 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 52 u a - - MP 78 77 6 82 6 2 3 49 68 -9.689 -9.628 -0.029 -6.286 -8.685 -9.080 -0.665 -2.107 0.010 1.113 -2.046 -2.954 1.650 -2.422 -1.810 0.702 -2.735 -0.739 2.058 -2.245 -0.249 -1.348 ML 79 77 6 82 6 1 1 48 67 -7.928 -8.274 -0.298 -2.683 -8.124 -5.653 0.098 -0.541 -1.035 0.811 MR 80 77 6 82 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 51 c g - - MP 84 83 6 88 6 2 3 47 66 -9.828 -9.767 -0.013 -8.543 -8.823 -9.218 -0.278 -2.839 -2.881 0.437 -2.116 -3.724 2.384 -3.028 -2.908 0.440 -3.465 -1.199 1.943 -3.032 0.608 -1.358 ML 85 83 6 88 6 1 1 46 66 -6.509 -6.855 -0.997 -1.263 -6.704 -4.234 0.088 0.226 -0.597 0.145 MR 86 83 6 88 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 50 a u - - MP 90 89 6 94 4 2 2 45 64 -8.399 -8.607 -0.019 -7.021 -4.691 -4.584 -4.585 2.809 -3.564 -5.193 2.395 -4.252 -4.586 -0.610 -4.990 -2.515 0.147 -4.853 0.387 -3.459 ML 91 89 6 94 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 45 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 44 64 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 47 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - C - - - ML 96 95 6 98 3 1 1 42 61 -9.349 -0.008 -8.003 -4.525 1.943 -5.124 -3.598 D 97 95 6 98 3 0 0 41 60 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - - - ML 99 98 3 101 3 1 1 41 60 -9.349 -0.126 -3.602 1.071 -0.883 -1.392 -0.035 D 100 98 3 101 3 0 0 40 59 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - A - - - ML 102 101 3 104 3 1 1 40 59 -9.231 -0.009 -7.885 1.796 -3.046 -3.068 -1.799 D 103 101 3 104 3 0 0 39 58 -7.708 -0.392 -2.099 IL 104 104 3 104 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - C - - - ML 105 104 3 107 3 1 1 39 58 -9.349 -0.008 -8.003 -2.363 1.823 -4.002 -2.288 D 106 104 3 107 3 0 0 38 57 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - G - - - ML 108 107 3 110 3 1 1 38 57 -9.349 -0.008 -8.003 -3.954 -5.446 1.954 -4.689 D 109 107 3 110 3 0 0 37 56 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - G - - - ML 111 110 3 113 3 1 1 37 56 -9.349 -0.008 -8.003 -3.954 -5.446 1.954 -4.689 D 112 110 3 113 3 0 0 36 55 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - A - - - ML 114 113 3 116 3 1 1 36 55 -9.349 -0.008 -8.003 1.955 -4.905 -4.357 -4.620 D 115 113 3 116 3 0 0 35 54 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - U - - - ML 117 116 3 119 3 1 1 35 54 -9.349 -0.008 -8.003 -1.944 -0.667 -2.966 1.576 D 118 116 3 119 3 0 0 34 53 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - C - - - ML 120 119 3 122 3 1 1 34 53 -9.349 -0.008 -8.003 -3.671 1.885 -3.305 -2.993 D 121 119 3 122 3 0 0 33 52 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - G - - - ML 123 122 3 125 3 1 1 33 52 -9.349 -0.008 -8.003 -3.954 -5.446 1.954 -4.689 D 124 122 3 125 3 0 0 32 51 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 126 125 3 128 5 1 1 32 50 -8.360 -0.016 -8.175 -8.388 -9.279 -3.935 -3.584 -4.731 1.931 D 127 125 3 128 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 128 128 3 128 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 32 49 C G - - MP 129 128 3 133 6 2 2 31 49 -9.840 -9.780 -0.013 -8.556 -8.836 -9.231 -5.081 -5.000 -4.894 -1.080 -3.668 -1.855 3.555 -4.431 -4.886 0.130 -5.242 -2.861 0.567 -5.191 -1.306 -3.699 ML 130 128 3 133 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 33 48 c g - - MP 135 134 6 139 6 2 2 29 47 -9.840 -9.780 -0.013 -8.556 -8.836 -9.231 -4.450 -3.695 -4.393 0.619 -3.889 -5.128 2.659 -4.314 -4.428 2.498 -4.853 -1.340 0.232 -4.509 -1.392 -3.191 ML 136 134 6 139 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 34 47 G C - - MP 141 140 6 145 6 2 2 27 45 -9.840 -9.780 -0.013 -8.556 -8.836 -9.231 -6.867 -4.260 -7.499 -0.782 -8.250 -5.633 -3.049 -7.683 -5.618 3.885 -5.868 -2.073 -3.366 -5.884 -5.263 -6.340 ML 142 140 6 145 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 35 46 G C - - MP 147 146 6 151 6 2 2 25 43 -9.840 -9.780 -0.013 -8.556 -8.836 -9.231 -7.173 -4.336 -8.080 -1.586 -8.478 -5.630 -3.234 -8.115 -5.688 3.916 -5.920 -2.189 -3.597 -5.971 -5.498 -6.928 ML 148 146 6 151 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 36 45 C G - - MP 153 152 6 157 6 2 2 23 41 -9.840 -9.780 -0.013 -8.556 -8.836 -9.231 -6.156 -6.309 -5.559 -2.460 -3.966 -5.761 3.770 -4.871 -5.647 -2.380 -5.789 -4.463 0.445 -6.052 -1.667 -4.443 ML 154 152 6 157 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 37 44 A U - - MP 159 158 6 163 4 2 2 21 39 -8.399 -8.607 -0.019 -7.021 -5.163 -6.987 -5.767 3.969 -9.367 -10.122 -5.340 -5.623 -7.968 -3.507 -8.531 -4.078 -5.521 -9.154 -7.132 -4.227 ML 160 158 6 163 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - C - - - ML 165 164 6 167 3 1 1 18 36 -9.349 -0.008 -8.003 -4.525 1.943 -5.124 -3.598 D 166 164 6 167 3 0 0 18 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - G - - - ML 168 167 3 170 3 1 1 17 35 -9.349 -0.008 -8.003 -3.954 -5.446 1.954 -4.689 D 169 167 3 170 3 0 0 17 35 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 40 - U - - - ML 171 170 3 173 3 1 1 15 34 -9.349 -0.008 -8.003 -3.935 -3.584 -4.731 1.931 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 41 - A - - - ML 174 173 3 176 3 1 1 14 32 -9.349 -0.008 -8.003 1.756 -2.937 -3.019 -1.443 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 42 - C - - - ML 177 176 3 179 3 1 1 12 31 -9.349 -0.008 -8.003 -4.525 1.943 -5.124 -3.598 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 43 - C - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -4.032 1.898 -4.688 -2.525 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME msiK ACC RF01747 DESC msiK RNA LENG 60 MAXL 125 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 21:38:22 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01747/CM NSEQ 120 EFFN 16.021729 CKSUM 1954512246 STATS LOCAL MSV -7.9794 0.71925 STATS LOCAL VITERBI -8.3013 0.71925 STATS LOCAL FORWARD -4.4572 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44385 1.25544 1.27741 1.60808 1.38629 1.38629 1.38629 1.38629 0.05875 5.23021 2.96212 1.46634 0.26236 0.00000 * 1 1.73119 1.64019 0.85743 1.58605 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.01129 5.18274 5.18274 1.46634 0.26236 0.28147 1.40516 2 1.67690 1.60584 0.83857 1.71482 2 g - - : 1.38629 1.38629 1.38629 1.38629 0.01081 5.22559 5.22559 1.46634 0.26236 1.35086 0.29978 3 1.51463 1.22202 1.38779 1.44456 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.01081 5.22559 5.22559 1.46634 0.26236 1.35086 0.29978 4 1.25306 1.46971 1.60023 1.26398 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.13109 5.22559 2.14142 1.46634 0.26236 1.35086 0.29978 5 1.12284 1.74148 1.09104 1.81082 5 g - - : 1.38629 1.38629 1.38629 1.38629 0.01873 5.10668 4.38244 1.46634 0.26236 3.20721 0.04131 6 1.19436 1.96857 1.52136 1.08166 6 u - - : 1.38629 1.38629 1.38629 1.38629 0.11345 5.10022 2.29111 1.46634 0.26236 3.24934 0.03957 7 1.39819 0.96987 1.77908 1.58460 7 c - - : 1.38629 1.38629 1.38629 1.38629 0.05810 5.00034 3.00162 1.46634 0.26236 0.14509 2.00207 8 1.22231 1.53475 1.18873 1.68561 8 g - - : 1.38629 1.38629 1.38629 1.38629 0.68331 1.81579 1.10158 0.59067 0.80734 0.24926 1.51129 9 1.91978 1.25676 1.74602 0.93060 13 u - - : 1.38629 1.38629 1.38629 1.38629 0.11628 4.85352 2.28309 1.46634 0.26236 0.26100 1.47088 10 3.95363 0.24774 3.86870 1.71832 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01238 5.09129 5.09129 1.46634 0.26236 0.11099 2.25330 11 3.18852 0.75793 3.35585 0.78690 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.03587 5.22559 3.51141 1.46634 0.26236 0.72988 0.65772 12 2.61148 1.12861 3.04014 0.58831 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.01103 5.20554 5.20554 1.46634 0.26236 0.30765 1.32868 13 2.21387 1.11085 2.54071 0.72850 17 u - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 14 1.31162 1.55179 2.07901 0.93218 18 u - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 15 2.02944 0.92822 2.55561 0.92713 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 16 0.63430 1.08899 4.03077 2.15956 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 17 5.21442 0.01965 5.54351 4.59468 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 18 0.56453 2.10791 2.60017 1.44554 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.10092 5.23021 2.40084 1.46634 0.26236 1.09861 0.40547 19 0.10128 4.10396 4.18917 2.73868 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.01177 5.14106 5.14106 1.46634 0.26236 0.11163 2.24785 20 3.18097 0.08391 4.74090 3.49962 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 21 4.80032 5.93596 0.01593 5.31249 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 22 4.80032 5.93596 0.01593 5.31249 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 23 0.01380 5.63036 5.21290 5.36509 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 24 3.16112 1.87021 4.07926 0.24002 28 U - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 25 4.58846 0.05008 3.74605 4.19501 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 26 4.80032 5.93596 0.01593 5.31249 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 27 5.01778 4.69804 5.59533 0.01964 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 28 4.25553 0.17652 2.74407 2.48500 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 29 2.48924 0.77064 0.90827 2.97419 33 c - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 30 3.42931 5.24638 0.04401 5.22566 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 31 4.18203 5.27122 0.02584 5.27787 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 32 4.79423 0.11199 4.71384 2.42246 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 33 0.01202 5.99447 5.28932 5.42439 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 34 5.21442 0.01965 5.54351 4.59468 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 35 4.80032 5.93596 0.01593 5.31249 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 36 5.01778 4.69804 5.59533 0.01964 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 37 0.12891 4.03295 4.15808 2.43515 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 38 5.21442 0.01965 5.54351 4.59468 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 39 4.85584 0.04642 5.19666 3.44076 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 40 5.74706 5.77175 5.94934 0.00895 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 41 2.53692 4.84818 0.10248 4.56058 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 42 5.31427 0.03240 5.18286 3.84685 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 43 5.27685 0.05111 5.14594 3.24681 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 44 3.22090 0.93780 0.74993 2.34143 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 45 2.63665 2.48651 0.19022 3.99442 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 46 3.39814 4.26548 0.87330 0.62558 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02599 5.23021 3.89697 1.46634 0.26236 1.09861 0.40547 47 1.04506 2.74028 0.71173 2.37534 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.19966 5.21514 1.73977 1.46634 0.26236 0.42347 1.06356 48 0.95103 2.25493 1.10781 1.72320 52 a - - > 1.38629 1.38629 1.38629 1.38629 0.05194 5.04678 3.11934 1.46634 0.26236 0.06006 2.84229 49 0.46421 2.89246 1.40286 2.65877 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.07258 5.19827 2.74142 1.46634 0.26236 0.25545 1.48974 50 0.65546 3.22103 0.93559 3.02564 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02252 5.17141 4.09878 1.46634 0.26236 0.15821 1.92191 51 1.39192 3.53026 0.37569 3.34415 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.11429 5.21986 2.27701 1.46634 0.26236 0.52130 0.90079 52 2.08612 4.19786 0.17336 3.91347 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.80210 0.60570 5.12908 0.52521 0.89509 0.10023 2.34994 53 0.54025 3.65145 1.15826 2.55858 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 54 1.10540 2.75315 0.66003 2.42634 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 55 0.75383 1.96430 1.58573 1.69071 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 56 0.72088 1.95534 2.21663 1.33491 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.01076 5.23021 5.23021 1.46634 0.26236 1.09861 0.40547 57 0.45620 1.98044 2.30604 2.05069 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.17459 5.23021 1.86533 1.46634 0.26236 1.09861 0.40547 58 0.72561 1.71471 2.30661 1.44241 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.10613 5.06828 2.36023 1.46634 0.26236 3.43173 0.03287 59 0.86460 1.80678 2.24922 1.17404 67 a - - : 1.38629 1.38629 1.38629 1.38629 0.27831 4.97605 1.44377 1.46634 0.26236 3.80511 0.02251 60 0.81880 1.68309 2.20887 1.33402 68 a - - : 1.38629 1.38629 1.38629 1.38629 0.00907 4.70682 * 1.46634 0.26236 0.00000 * //