INFERNAL1/a [1.1.5 | Sep 2023] NAME Glutamine ACC RF01739 DESC Glutamine riboswitch aptamer (glnA leader) STATES 168 NODES 46 CLEN 53 W 127 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 15 14:31:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/OK_update/RF01739/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 940 EFFN 10.502853 CKSUM 1904859573 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -20.1521 0.71917 ECMLC 0.66093 -5.52435 3.01897 1600000 339973 0.003530 ECMGC 0.40761 -19.30257 -5.87196 1600000 95408 0.004193 ECMLI 0.63700 -4.90381 3.51575 1600000 256113 0.004685 ECMGI 0.41337 -15.28609 -2.67820 1600000 73368 0.005452 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 127 206 -8.728 -8.935 -0.020 -6.722 IL 1 1 2 1 4 1 21 130 208 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 129 207 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 2 22 128 206 -9.665 -0.006 -8.319 1.356 -1.443 -1.863 -0.326 D 4 2 3 5 3 0 16 125 204 -6.310 -1.728 -0.545 IL 5 5 3 5 3 1 20 128 206 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 21 127 205 -9.989 -0.011 -7.253 -0.079 -1.821 -1.870 1.320 D 7 5 3 8 3 0 15 125 203 -5.686 -0.800 -1.300 IL 8 8 3 8 3 1 19 127 205 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 230 - c - - MR 9 8 3 11 3 1 21 126 204 -9.984 -0.006 -8.302 -0.024 0.260 -0.415 0.097 D 10 8 3 11 3 0 14 123 201 -6.596 -1.773 -0.521 IR 11 11 3 11 3 1 19 126 204 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 229 - u - - MR 12 11 3 14 3 1 21 125 203 -9.984 -0.006 -8.302 -0.259 0.161 -0.664 0.501 D 13 11 3 14 3 0 14 123 201 -6.596 -1.233 -0.825 IR 14 14 3 14 3 1 18 125 203 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 228 - A - - MR 15 14 3 17 3 1 20 124 202 -9.993 -0.006 -8.311 1.026 -2.132 0.378 -1.198 D 16 14 3 17 3 0 13 121 200 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 124 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 227 - C - - MR 18 17 3 20 5 1 20 123 201 -8.665 -0.013 -8.481 -8.693 -9.585 -2.330 1.687 -1.762 -1.804 D 19 17 3 20 5 0 12 121 199 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 16 123 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 226 C G - - MP 21 20 3 25 6 2 20 122 200 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -7.566 -7.740 -6.682 -3.953 -5.044 -6.717 3.933 -3.167 -7.045 -3.905 -6.756 -5.962 -2.031 -7.457 -3.046 -5.845 ML 22 20 3 25 6 1 14 119 198 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 14 119 197 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 10 115 193 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 15 121 199 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 15 121 199 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 225 G C - - MP 27 26 6 31 6 2 19 120 198 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -4.539 -3.148 -4.383 0.434 -5.472 -4.905 -0.567 -3.183 -4.722 3.545 -2.119 -0.510 -0.835 -2.920 -2.575 -3.345 ML 28 26 6 31 6 1 14 118 196 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 13 117 195 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 10 114 192 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 15 119 197 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 15 119 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 224 U A - - MP 33 32 6 37 6 2 17 118 196 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -9.793 -9.599 -9.326 -6.068 -7.799 -9.571 -3.710 -8.706 -8.930 -6.125 -9.555 -7.639 3.982 -9.291 -4.757 -4.847 ML 34 32 6 37 6 1 13 116 194 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 13 115 194 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 10 112 191 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 14 117 195 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 14 117 195 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 223 U A - - MP 39 38 6 43 6 2 15 116 194 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -8.426 -8.567 -7.818 -4.866 -6.199 -7.990 -1.954 -7.115 -7.760 -4.835 -8.047 -6.847 3.947 -8.139 -2.617 -5.250 ML 40 38 6 43 6 1 12 114 192 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 12 114 192 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 9 111 190 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 13 115 193 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 13 115 193 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 222 C G - - MP 45 44 6 49 4 2 13 114 192 -8.728 -8.935 -0.016 -7.209 -5.975 -5.927 -5.568 -1.964 -4.099 -5.925 3.669 -4.931 -5.583 0.299 -5.842 -3.797 0.216 -5.975 -1.741 -4.364 ML 46 44 6 49 4 1 11 113 191 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 10 112 190 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 9 111 189 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 12 114 192 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 12 113 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 8 - A - - - ML 51 50 6 53 3 1 11 112 190 -9.992 -0.008 -7.751 1.908 -4.407 -2.764 -4.224 D 52 50 6 53 3 0 9 110 188 -5.636 -0.723 -1.419 IL 53 53 3 53 3 1 11 112 190 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 221 - G - - MR 54 53 3 56 3 1 10 111 189 -9.991 -0.006 -8.309 -4.344 -5.892 1.965 -5.077 D 55 53 3 56 3 0 8 109 187 -6.445 -1.466 -0.675 IR 56 56 3 56 3 1 10 111 189 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 220 - A - - MR 57 56 3 59 3 1 9 110 188 -9.993 -0.026 -5.900 1.909 -3.182 -3.919 -3.865 D 58 56 3 59 3 0 7 108 186 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 9 110 188 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 219 - A - - MR 60 59 3 62 3 1 8 109 187 -9.973 -0.006 -8.291 1.967 -5.355 -4.791 -5.047 D 61 59 3 62 3 0 7 107 185 -6.826 -2.004 -0.431 IR 62 62 3 62 3 1 9 109 187 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 218 - G - - MR 63 62 3 65 2 1 8 108 186 -10.229 -0.001 -2.501 -2.759 1.832 -3.122 D 64 62 3 65 2 0 7 107 185 -4.884 -0.050 IR 65 65 3 65 2 1 8 108 186 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 17 ] - - - - - - B 66 65 3 67 111 0 6 107 185 [ BEGL 18 ] - - - - - - S 67 66 1 68 4 0 0 73 140 -0.020 -7.990 -7.398 -8.038 [ MATP 19 ] 9 95 u a - - MP 68 67 1 72 6 2 2 73 140 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -3.564 -3.489 -3.671 1.858 -2.881 -4.508 1.272 -3.638 -3.663 0.823 -4.198 -1.294 2.640 -3.819 -0.792 -1.959 ML 69 67 1 72 6 1 1 71 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 1 72 6 1 1 71 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 1 72 6 0 0 67 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 73 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 72 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 94 C G - - MP 74 73 6 78 6 2 2 71 138 -10.055 -9.995 -0.015 -8.771 -9.051 -7.835 -5.389 -5.239 -5.180 -0.760 -3.859 -5.724 3.401 -4.621 -5.131 -0.484 -5.502 -2.965 1.705 -5.478 -1.332 -3.892 ML 75 73 6 78 6 1 1 69 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 69 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 65 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 71 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 70 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 11 93 c g - - MP 80 79 6 84 6 2 2 69 136 -10.051 -9.990 -0.106 -8.767 -6.283 -4.213 -4.527 -4.314 -4.522 0.536 -3.461 -5.312 2.606 -4.114 -4.422 0.240 -4.918 -1.995 2.549 -4.717 -0.652 -3.197 ML 81 79 6 84 6 1 1 67 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 67 134 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 62 129 -9.181 -7.880 -3.677 -4.359 -4.376 -0.288 IL 84 84 5 84 6 1 1 69 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 69 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 12 92 c g - - MP 86 85 6 90 6 2 2 68 134 -9.957 -9.896 -0.341 -8.672 -6.432 -2.363 -3.360 -2.966 -3.483 0.758 -2.713 -2.823 2.502 -3.338 -3.467 0.437 -4.014 -1.387 2.301 -3.640 -0.236 -2.391 ML 87 85 6 90 6 1 1 65 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 66 132 -7.302 -6.031 -1.940 -6.009 -0.625 -4.223 0.163 0.185 -0.605 0.119 D 89 85 6 90 6 0 0 60 126 -10.537 -9.235 -5.032 -5.714 -5.732 -0.106 IL 90 90 5 90 6 1 1 67 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 67 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 13 91 c g - - MP 92 91 6 96 4 2 2 66 133 -0.829 -3.740 -1.505 -6.670 -2.911 -2.750 -3.119 1.290 -2.625 -3.951 2.076 -3.186 -3.141 1.643 -3.677 -0.781 1.771 -3.252 -0.055 -2.130 ML 93 91 6 96 4 1 1 59 125 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 64 130 -1.469 -4.433 -2.300 -1.361 -0.168 -0.378 -0.819 0.826 D 95 91 6 96 4 0 0 59 125 -7.601 -1.605 -0.788 -3.524 IL 96 96 5 96 4 1 1 66 133 -0.634 -1.609 -5.282 -9.019 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 62 129 -0.400 -2.062 -8.422 0.000 0.000 0.000 0.000 [ MATL 24 ] 37 - u - - - ML 98 97 6 100 3 1 1 15 33 -9.669 -0.014 -6.923 0.245 -0.951 -0.590 0.708 D 99 97 6 100 3 0 0 16 34 -6.203 -1.716 -0.552 IL 100 100 3 100 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 38 - u - - - ML 101 100 3 103 3 1 1 14 32 -9.661 -0.017 -6.588 0.178 -0.795 -1.084 0.865 D 102 100 3 103 3 0 0 14 33 -6.406 -1.332 -0.759 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 39 - a - - - ML 104 103 3 106 3 1 1 12 30 -9.658 -0.145 -3.404 0.573 -0.525 -1.253 0.483 D 105 103 3 106 3 0 0 13 32 -6.479 -1.992 -0.439 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 40 - a - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 0.544 -1.092 -0.513 0.457 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 111 66 1 112 3 0 0 84 162 -9.669 -0.006 -8.324 IL 112 112 2 112 3 1 1 86 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 96 - C - - - ML 113 112 2 115 3 1 1 84 162 -9.669 -0.006 -8.324 -4.436 1.916 -5.018 -2.756 D 114 112 2 115 3 0 0 82 160 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 85 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 97 - G - - - ML 116 115 3 118 3 1 1 83 161 -9.669 -0.006 -8.324 -4.347 -5.895 1.965 -5.080 D 117 115 3 118 3 0 0 81 159 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 84 162 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 98 - G - - - ML 119 118 3 121 3 1 1 82 160 -9.112 -0.007 -8.324 -2.435 -1.713 1.764 -3.126 D 120 118 3 121 3 0 0 80 158 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 83 161 -1.448 -0.793 -4.148 0.000 0.000 0.000 0.000 [ MATL 33 ] 100 - A - - - ML 122 121 3 124 3 1 1 81 159 -9.669 -0.006 -8.324 1.968 -5.385 -4.819 -5.074 D 123 121 3 124 3 0 0 79 157 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 82 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 101 - A - - - ML 125 124 3 127 3 1 1 80 158 -9.669 -0.015 -6.770 1.968 -5.385 -4.819 -5.074 D 126 124 3 127 3 0 0 78 156 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 81 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 102 - G - - - ML 128 127 3 130 3 1 1 79 157 -9.661 -0.006 -8.315 -3.515 -5.569 1.947 -4.836 D 129 127 3 130 3 0 0 77 155 -6.415 -1.928 -0.463 IL 130 130 3 130 3 1 1 80 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 103 - U - - - ML 131 130 3 133 3 1 1 78 156 -9.661 -0.021 -6.219 -4.407 -4.016 -5.213 1.950 D 132 130 3 133 3 0 0 76 154 -6.415 -1.263 -0.807 IL 133 133 3 133 3 1 1 79 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 104 - A - - - ML 134 133 3 136 5 1 1 77 155 -8.651 -0.022 -8.467 -8.679 -7.044 1.967 -5.363 -4.798 -5.054 D 135 133 3 136 5 0 0 74 152 -5.190 -1.034 -4.451 -2.826 -1.749 IL 136 136 3 136 5 1 1 77 155 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 105 217 g c - - MP 137 136 3 141 6 2 2 76 154 -10.039 -9.978 -0.011 -8.754 -9.034 -9.429 -4.375 -2.838 -4.212 2.001 -5.307 -4.834 -0.101 -4.869 -4.608 2.977 -4.876 0.768 -0.471 -4.090 -2.417 -3.169 ML 138 136 3 141 6 1 1 74 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 73 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 69 147 -9.512 -8.211 -4.008 -4.690 -4.707 -0.224 IL 141 141 5 141 6 1 1 75 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 75 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 106 216 G C - - MP 143 142 6 147 6 2 2 74 152 -10.039 -9.978 -0.091 -8.754 -7.310 -4.300 -4.334 -3.020 -4.169 1.384 -5.110 -4.772 0.587 -4.794 -4.023 3.233 -4.833 -0.636 0.025 -4.038 -2.187 -3.125 ML 144 142 6 147 6 1 1 71 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 71 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 68 146 -9.512 -8.211 -4.008 -4.690 -4.707 -0.224 IL 147 147 5 147 6 1 1 73 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 73 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 107 215 c g - - MP 149 148 6 153 4 2 2 72 150 -1.940 -3.401 -0.648 -7.205 -2.731 -3.275 -3.101 0.560 -2.811 -4.411 2.724 -3.504 -3.413 0.895 -3.941 -1.479 1.894 -3.721 -0.117 -2.499 ML 150 148 6 153 4 1 1 67 145 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 1 69 147 -2.917 -3.991 -1.858 -0.919 0.665 -0.588 -0.292 -0.101 D 152 148 6 153 4 0 0 68 146 -6.075 -1.920 -1.072 -2.027 IL 153 153 5 153 4 1 1 75 153 -0.838 -1.359 -4.401 -8.139 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 73 151 -0.341 -2.283 -7.677 0.000 0.000 0.000 0.000 [ MATL 41 ] 128 - g - - - ML 155 154 6 157 3 1 1 15 33 -9.666 -0.006 -8.320 0.265 -0.722 0.290 -0.045 D 156 154 6 157 3 0 0 16 34 -6.282 -1.795 -0.517 IL 157 157 3 157 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 129 - a - - - ML 158 157 3 160 3 1 1 13 32 -9.666 -0.006 -8.320 0.814 -0.811 -0.976 0.219 D 159 157 3 160 3 0 0 15 33 -6.282 -1.795 -0.517 IL 160 160 3 160 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 130 - a - - - ML 161 160 3 163 3 1 1 10 19 -2.239 -0.457 -4.071 0.909 -0.892 -0.692 -0.053 D 162 160 3 163 3 0 0 8 17 -6.282 -1.795 -0.517 IL 163 163 3 163 3 1 1 10 19 -2.815 -0.258 -5.515 0.000 0.000 0.000 0.000 [ MATL 44 ] 132 - A - - - ML 164 163 3 166 2 1 1 1 1 * 0.000 1.259 -1.137 -1.176 -0.495 D 165 163 3 166 2 0 0 0 0 * 0.000 IL 166 166 3 166 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 167 166 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Glutamine ACC RF01739 DESC Glutamine riboswitch aptamer (glnA leader) LENG 53 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 15 14:31:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/OK_update/RF01739/CM NSEQ 940 EFFN 52.550125 CKSUM 1904859573 STATS LOCAL MSV -7.4829 0.71917 STATS LOCAL VITERBI -8.2590 0.71917 STATS LOCAL FORWARD -4.0127 0.71917 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17604 1.56433 1.31087 1.54793 1.38629 1.38629 1.38629 1.38629 0.00317 6.44820 6.44820 1.46634 0.26236 0.00000 * 1 0.33382 2.78938 3.38258 1.66919 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.00317 6.44820 6.44820 1.46634 0.26236 1.09861 0.40547 2 1.41259 3.67493 3.32300 0.36371 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.00317 6.44900 6.44900 1.46634 0.26236 1.09861 0.40547 3 6.10372 0.01484 6.02407 4.59773 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 4 4.82509 4.46333 0.03164 4.45741 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 5 7.53377 7.68721 7.76389 0.00142 5 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 6 6.95653 5.70754 7.03069 0.00517 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 7 5.86110 0.13210 2.60134 3.06357 7 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00386 6.45192 6.08705 1.46634 0.26236 1.09861 0.40547 8 0.03398 6.25073 3.53630 6.04754 8 A - - , 1.38629 1.38629 1.38629 1.38629 0.00316 6.45123 6.45123 1.46634 0.26236 0.87069 0.54242 9 1.22097 2.65065 2.45846 0.59987 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 10 4.06056 0.27985 3.76213 1.59145 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.00801 6.45192 5.05199 1.46634 0.26236 1.09861 0.40547 11 2.56695 0.87879 3.12859 0.76751 11 u - - < 1.38629 1.38629 1.38629 1.38629 0.11333 6.44709 2.24847 1.46634 0.26236 1.80087 0.18051 12 2.41168 0.83364 3.04531 0.84796 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.40633 6.33730 1.10219 1.46634 0.26236 1.75986 0.18883 13 1.72343 1.24818 1.43053 1.21964 13 u - - < 1.38629 1.38629 1.38629 1.38629 1.16843 0.37603 5.96576 1.06586 0.42225 0.01008 4.60245 14 1.22250 2.35804 1.85181 0.78977 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00901 6.45117 4.90698 1.46634 0.26236 1.24629 0.33907 15 1.26842 2.14635 2.42088 0.66754 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01149 6.44533 4.62128 1.46634 0.26236 0.41564 1.07857 16 0.90358 1.83400 2.71603 0.99703 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07447 6.44300 2.65684 1.46634 0.26236 1.77787 0.18512 17 0.93078 2.60878 1.78282 1.01069 40 a - - _ 1.38629 1.38629 1.38629 1.38629 1.38989 0.62496 1.53425 1.65808 0.21134 0.93679 0.49739 18 1.42639 1.53008 1.12493 1.52037 91 g - - > 1.38629 1.38629 1.38629 1.38629 0.06478 6.17268 2.80279 1.46634 0.26236 0.22120 1.61724 19 0.94284 2.79613 0.79802 2.31047 92 g - - > 1.38629 1.38629 1.38629 1.38629 0.00347 6.35715 6.35715 1.46634 0.26236 0.08752 2.47931 20 0.81431 3.22225 0.83147 2.50370 93 a - - > 1.38629 1.38629 1.38629 1.38629 0.00318 6.44709 6.44709 1.46634 0.26236 0.40094 1.10773 21 1.62292 3.80206 0.27231 3.97740 94 G - - > 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 22 0.63698 2.59611 2.53623 1.14765 95 A - - > 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 23 5.97626 0.03105 6.24140 3.64618 96 C - - , 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 24 5.85237 7.07403 0.00543 6.37931 97 G - - , 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 25 4.34840 2.44434 0.11017 5.38094 98 G - - , 1.38629 1.38629 1.38629 1.38629 0.00382 6.10333 6.45192 1.08736 0.41114 1.09861 0.40547 26 0.00425 6.88726 6.38525 6.48071 100 A - - , 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 27 0.00425 6.88726 6.38525 6.48071 101 A - - , 1.38629 1.38629 1.38629 1.38629 0.01007 6.45192 4.77462 1.46634 0.26236 1.09861 0.40547 28 4.29724 6.99597 0.01645 6.32409 102 G - - , 1.38629 1.38629 1.38629 1.38629 0.00318 6.44503 6.44503 1.46634 0.26236 1.99485 0.14622 29 6.87005 6.31200 7.57710 0.00337 103 U - - , 1.38629 1.38629 1.38629 1.38629 0.01498 6.44503 4.32133 1.46634 0.26236 0.31755 1.30170 30 0.00430 6.87580 6.37438 6.47016 104 A - - , 1.38629 1.38629 1.38629 1.38629 0.01070 6.44024 4.70560 1.46634 0.26236 2.33815 0.10149 31 1.20358 3.28321 0.46102 3.45038 105 G - - < 1.38629 1.38629 1.38629 1.38629 0.00322 6.43276 6.43276 1.46634 0.26236 2.70998 0.06886 32 1.85583 2.40528 0.36468 2.82995 106 G - - < 1.38629 1.38629 1.38629 1.38629 0.08831 6.43276 2.48996 1.46634 0.26236 2.70998 0.06886 33 2.57830 0.64938 2.25063 1.21606 107 C - - < 1.38629 1.38629 1.38629 1.38629 0.35555 1.21248 6.34796 0.87342 0.54047 0.03097 3.49031 34 1.20193 2.00641 1.04739 1.54149 128 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00609 6.45192 5.40482 1.46634 0.26236 1.09861 0.40547 35 0.70287 2.13992 2.30742 1.24599 129 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00317 6.44900 6.44900 1.46634 0.26236 1.57885 0.23094 36 0.62822 2.21560 1.95366 1.53424 130 A - - _ 1.38629 1.38629 1.38629 1.38629 0.32719 1.42299 3.26858 0.01308 4.34331 0.53175 0.88571 37 0.38471 2.42736 2.43692 1.94034 132 A - - _ 1.38629 1.38629 1.38629 1.38629 0.61074 0.93704 2.72931 1.72891 0.19538 0.07986 2.56713 38 1.33890 2.31223 0.56863 2.62383 215 G - - > 1.38629 1.38629 1.38629 1.38629 0.02386 6.38865 3.82147 1.46634 0.26236 0.04895 3.04136 39 2.90967 0.38573 2.34682 1.77267 216 C - - > 1.38629 1.38629 1.38629 1.38629 0.00322 6.43276 6.43276 1.46634 0.26236 2.70998 0.06886 40 3.62291 0.67301 3.17918 0.86393 217 C - - > 1.38629 1.38629 1.38629 1.38629 0.01949 6.43276 4.03440 1.46634 0.26236 0.14280 2.01683 41 3.97445 3.40188 0.06598 4.44420 218 G - - , 1.38629 1.38629 1.38629 1.38629 0.00321 6.43601 6.43601 1.46634 0.26236 2.56534 0.08001 42 0.00431 6.87165 6.37045 6.46634 219 A - - , 1.38629 1.38629 1.38629 1.38629 0.00321 6.43601 6.43601 1.46634 0.26236 0.16698 1.87220 43 0.02877 3.81008 5.83504 5.71781 220 A - - , 1.38629 1.38629 1.38629 1.38629 0.00490 6.45192 5.71194 1.46634 0.26236 1.09861 0.40547 44 5.85076 7.07238 0.00544 6.37769 221 G - - , 1.38629 1.38629 1.38629 1.38629 0.00317 6.45019 6.45019 1.46634 0.26236 0.67000 0.71684 45 3.13368 2.60678 0.12885 5.63761 222 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 46 0.01232 7.17894 4.67147 6.15475 223 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 47 0.00392 7.94826 6.41626 6.25573 224 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 48 5.96676 0.06315 3.69084 3.39083 225 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 49 4.90610 6.17607 0.02553 4.15244 226 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 50 3.57858 0.15444 2.45415 3.53178 227 C - - : 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 51 0.58386 3.87714 1.03135 2.73302 228 A - - : 1.38629 1.38629 1.38629 1.38629 0.00318 6.44504 6.44504 1.46634 0.26236 1.09861 0.40547 52 1.78057 1.17247 1.89239 0.99116 229 u - - : 1.38629 1.38629 1.38629 1.38629 0.00318 6.44504 6.44504 1.46634 0.26236 1.09861 0.40547 53 1.51108 1.06517 1.65006 1.41625 230 c - - : 1.38629 1.38629 1.38629 1.38629 0.00159 6.44345 * 1.46634 0.26236 0.00000 * //