INFERNAL1/a [1.1.4 | Dec 2020] NAME glnA ACC RF01739 DESC Glutamine riboswitch STATES 168 NODES 46 CLEN 53 W 127 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 24 14:20:58 2022 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/3Dfams/3Dreview/RF01739/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 940 EFFN 10.502853 CKSUM 1904859573 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.00 NC 40.90 EFP7GF -20.1521 0.71917 ECMLC 0.66093 -5.52435 3.01897 1600000 339973 0.003530 ECMGC 0.40761 -19.30257 -5.87196 1600000 95408 0.004193 ECMLI 0.63700 -4.90381 3.51575 1600000 256113 0.004685 ECMGI 0.41337 -15.28609 -2.67820 1600000 73368 0.005452 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 127 206 -8.728 -8.935 -0.020 -6.722 IL 1 1 2 1 4 1 21 130 208 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 129 207 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 2 22 128 206 -9.665 -0.006 -8.319 1.356 -1.443 -1.863 -0.326 D 4 2 3 5 3 0 16 125 204 -6.310 -1.728 -0.545 IL 5 5 3 5 3 1 20 128 206 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 21 127 205 -9.989 -0.011 -7.253 -0.079 -1.821 -1.870 1.320 D 7 5 3 8 3 0 15 125 203 -5.686 -0.800 -1.300 IL 8 8 3 8 3 1 19 127 205 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 230 - c - - MR 9 8 3 11 3 1 21 126 204 -9.984 -0.006 -8.302 -0.024 0.260 -0.415 0.097 D 10 8 3 11 3 0 14 123 201 -6.596 -1.773 -0.521 IR 11 11 3 11 3 1 19 126 204 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 229 - u - - MR 12 11 3 14 3 1 21 125 203 -9.984 -0.006 -8.302 -0.259 0.161 -0.664 0.501 D 13 11 3 14 3 0 14 123 201 -6.596 -1.233 -0.825 IR 14 14 3 14 3 1 18 125 203 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 228 - A - - MR 15 14 3 17 3 1 20 124 202 -9.993 -0.006 -8.311 1.026 -2.132 0.378 -1.198 D 16 14 3 17 3 0 13 121 200 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 124 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 227 - C - - MR 18 17 3 20 5 1 20 123 201 -8.665 -0.013 -8.481 -8.693 -9.585 -2.330 1.687 -1.762 -1.804 D 19 17 3 20 5 0 12 121 199 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 16 123 201 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 226 C G - - MP 21 20 3 25 6 2 20 122 200 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -7.566 -7.740 -6.682 -3.953 -5.044 -6.717 3.933 -3.167 -7.045 -3.905 -6.756 -5.962 -2.031 -7.457 -3.046 -5.845 ML 22 20 3 25 6 1 14 119 198 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 14 119 197 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 10 115 193 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 15 121 199 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 15 121 199 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 225 G C - - MP 27 26 6 31 6 2 19 120 198 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -4.539 -3.148 -4.383 0.434 -5.472 -4.905 -0.567 -3.183 -4.722 3.545 -2.119 -0.510 -0.835 -2.920 -2.575 -3.345 ML 28 26 6 31 6 1 14 118 196 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 13 117 195 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 10 114 192 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 15 119 197 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 15 119 197 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 224 U A - - MP 33 32 6 37 6 2 17 118 196 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -9.793 -9.599 -9.326 -6.068 -7.799 -9.571 -3.710 -8.706 -8.930 -6.125 -9.555 -7.639 3.982 -9.291 -4.757 -4.847 ML 34 32 6 37 6 1 13 116 194 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 13 115 194 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 10 112 191 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 14 117 195 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 14 117 195 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 223 U A - - MP 39 38 6 43 6 2 15 116 194 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -8.426 -8.567 -7.818 -4.866 -6.199 -7.990 -1.954 -7.115 -7.760 -4.835 -8.047 -6.847 3.947 -8.139 -2.617 -5.250 ML 40 38 6 43 6 1 12 114 192 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 12 114 192 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 9 111 190 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 13 115 193 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 13 115 193 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 222 C G - - MP 45 44 6 49 4 2 13 114 192 -8.728 -8.935 -0.016 -7.209 -5.975 -5.927 -5.568 -1.964 -4.099 -5.925 3.669 -4.931 -5.583 0.299 -5.842 -3.797 0.216 -5.975 -1.741 -4.364 ML 46 44 6 49 4 1 11 113 191 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 10 112 190 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 9 111 189 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 12 114 192 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 12 113 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 8 - A - - - ML 51 50 6 53 3 1 11 112 190 -9.992 -0.008 -7.751 1.908 -4.407 -2.764 -4.224 D 52 50 6 53 3 0 9 110 188 -5.636 -0.723 -1.419 IL 53 53 3 53 3 1 11 112 190 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 221 - G - - MR 54 53 3 56 3 1 10 111 189 -9.991 -0.006 -8.309 -4.344 -5.892 1.965 -5.077 D 55 53 3 56 3 0 8 109 187 -6.445 -1.466 -0.675 IR 56 56 3 56 3 1 10 111 189 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 220 - A - - MR 57 56 3 59 3 1 9 110 188 -9.993 -0.026 -5.900 1.909 -3.182 -3.919 -3.865 D 58 56 3 59 3 0 7 108 186 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 9 110 188 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 219 - A - - MR 60 59 3 62 3 1 8 109 187 -9.973 -0.006 -8.291 1.967 -5.355 -4.791 -5.047 D 61 59 3 62 3 0 7 107 185 -6.826 -2.004 -0.431 IR 62 62 3 62 3 1 9 109 187 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 218 - G - - MR 63 62 3 65 2 1 8 108 186 -10.229 -0.001 -2.501 -2.759 1.832 -3.122 D 64 62 3 65 2 0 7 107 185 -4.884 -0.050 IR 65 65 3 65 2 1 8 108 186 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 17 ] - - - - - - B 66 65 3 67 111 0 6 107 185 [ BEGL 18 ] - - - - - - S 67 66 1 68 4 0 0 73 140 -0.020 -7.990 -7.398 -8.038 [ MATP 19 ] 9 95 u a - - MP 68 67 1 72 6 2 2 73 140 -10.055 -9.995 -0.011 -8.771 -9.051 -9.446 -3.564 -3.489 -3.671 1.858 -2.881 -4.508 1.272 -3.638 -3.663 0.823 -4.198 -1.294 2.640 -3.819 -0.792 -1.959 ML 69 67 1 72 6 1 1 71 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 1 72 6 1 1 71 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 1 72 6 0 0 67 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 73 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 72 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 94 C G - - MP 74 73 6 78 6 2 2 71 138 -10.055 -9.995 -0.015 -8.771 -9.051 -7.835 -5.389 -5.239 -5.180 -0.760 -3.859 -5.724 3.401 -4.621 -5.131 -0.484 -5.502 -2.965 1.705 -5.478 -1.332 -3.892 ML 75 73 6 78 6 1 1 69 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 69 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 65 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 71 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 70 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 11 93 c g - - MP 80 79 6 84 6 2 2 69 136 -10.051 -9.990 -0.106 -8.767 -6.283 -4.213 -4.527 -4.314 -4.522 0.536 -3.461 -5.312 2.606 -4.114 -4.422 0.240 -4.918 -1.995 2.549 -4.717 -0.652 -3.197 ML 81 79 6 84 6 1 1 67 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 67 134 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 62 129 -9.181 -7.880 -3.677 -4.359 -4.376 -0.288 IL 84 84 5 84 6 1 1 69 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 69 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 12 92 c g - - MP 86 85 6 90 6 2 2 68 134 -9.957 -9.896 -0.341 -8.672 -6.432 -2.363 -3.360 -2.966 -3.483 0.758 -2.713 -2.823 2.502 -3.338 -3.467 0.437 -4.014 -1.387 2.301 -3.640 -0.236 -2.391 ML 87 85 6 90 6 1 1 65 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 66 132 -7.302 -6.031 -1.940 -6.009 -0.625 -4.223 0.163 0.185 -0.605 0.119 D 89 85 6 90 6 0 0 60 126 -10.537 -9.235 -5.032 -5.714 -5.732 -0.106 IL 90 90 5 90 6 1 1 67 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 67 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 13 91 c g - - MP 92 91 6 96 4 2 2 66 133 -0.829 -3.740 -1.505 -6.670 -2.911 -2.750 -3.119 1.290 -2.625 -3.951 2.076 -3.186 -3.141 1.643 -3.677 -0.781 1.771 -3.252 -0.055 -2.130 ML 93 91 6 96 4 1 1 59 125 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 64 130 -1.469 -4.433 -2.300 -1.361 -0.168 -0.378 -0.819 0.826 D 95 91 6 96 4 0 0 59 125 -7.601 -1.605 -0.788 -3.524 IL 96 96 5 96 4 1 1 66 133 -0.634 -1.609 -5.282 -9.019 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 62 129 -0.400 -2.062 -8.422 0.000 0.000 0.000 0.000 [ MATL 24 ] 37 - u - - - ML 98 97 6 100 3 1 1 15 33 -9.669 -0.014 -6.923 0.245 -0.951 -0.590 0.708 D 99 97 6 100 3 0 0 16 34 -6.203 -1.716 -0.552 IL 100 100 3 100 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 38 - u - - - ML 101 100 3 103 3 1 1 14 32 -9.661 -0.017 -6.588 0.178 -0.795 -1.084 0.865 D 102 100 3 103 3 0 0 14 33 -6.406 -1.332 -0.759 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 39 - a - - - ML 104 103 3 106 3 1 1 12 30 -9.658 -0.145 -3.404 0.573 -0.525 -1.253 0.483 D 105 103 3 106 3 0 0 13 32 -6.479 -1.992 -0.439 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 40 - a - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 0.544 -1.092 -0.513 0.457 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 111 66 1 112 3 0 0 84 162 -9.669 -0.006 -8.324 IL 112 112 2 112 3 1 1 86 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 96 - C - - - ML 113 112 2 115 3 1 1 84 162 -9.669 -0.006 -8.324 -4.436 1.916 -5.018 -2.756 D 114 112 2 115 3 0 0 82 160 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 85 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 97 - G - - - ML 116 115 3 118 3 1 1 83 161 -9.669 -0.006 -8.324 -4.347 -5.895 1.965 -5.080 D 117 115 3 118 3 0 0 81 159 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 84 162 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 98 - G - - - ML 119 118 3 121 3 1 1 82 160 -9.112 -0.007 -8.324 -2.435 -1.713 1.764 -3.126 D 120 118 3 121 3 0 0 80 158 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 83 161 -1.448 -0.793 -4.148 0.000 0.000 0.000 0.000 [ MATL 33 ] 100 - A - - - ML 122 121 3 124 3 1 1 81 159 -9.669 -0.006 -8.324 1.968 -5.385 -4.819 -5.074 D 123 121 3 124 3 0 0 79 157 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 82 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 101 - A - - - ML 125 124 3 127 3 1 1 80 158 -9.669 -0.015 -6.770 1.968 -5.385 -4.819 -5.074 D 126 124 3 127 3 0 0 78 156 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 81 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 102 - G - - - ML 128 127 3 130 3 1 1 79 157 -9.661 -0.006 -8.315 -3.515 -5.569 1.947 -4.836 D 129 127 3 130 3 0 0 77 155 -6.415 -1.928 -0.463 IL 130 130 3 130 3 1 1 80 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 103 - U - - - ML 131 130 3 133 3 1 1 78 156 -9.661 -0.021 -6.219 -4.407 -4.016 -5.213 1.950 D 132 130 3 133 3 0 0 76 154 -6.415 -1.263 -0.807 IL 133 133 3 133 3 1 1 79 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 104 - A - - - ML 134 133 3 136 5 1 1 77 155 -8.651 -0.022 -8.467 -8.679 -7.044 1.967 -5.363 -4.798 -5.054 D 135 133 3 136 5 0 0 74 152 -5.190 -1.034 -4.451 -2.826 -1.749 IL 136 136 3 136 5 1 1 77 155 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 105 217 g c - - MP 137 136 3 141 6 2 2 76 154 -10.039 -9.978 -0.011 -8.754 -9.034 -9.429 -4.375 -2.838 -4.212 2.001 -5.307 -4.834 -0.101 -4.869 -4.608 2.977 -4.876 0.768 -0.471 -4.090 -2.417 -3.169 ML 138 136 3 141 6 1 1 74 152 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 73 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 69 147 -9.512 -8.211 -4.008 -4.690 -4.707 -0.224 IL 141 141 5 141 6 1 1 75 153 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 75 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 106 216 G C - - MP 143 142 6 147 6 2 2 74 152 -10.039 -9.978 -0.091 -8.754 -7.310 -4.300 -4.334 -3.020 -4.169 1.384 -5.110 -4.772 0.587 -4.794 -4.023 3.233 -4.833 -0.636 0.025 -4.038 -2.187 -3.125 ML 144 142 6 147 6 1 1 71 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 71 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 68 146 -9.512 -8.211 -4.008 -4.690 -4.707 -0.224 IL 147 147 5 147 6 1 1 73 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 73 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 107 215 c g - - MP 149 148 6 153 4 2 2 72 150 -1.940 -3.401 -0.648 -7.205 -2.731 -3.275 -3.101 0.560 -2.811 -4.411 2.724 -3.504 -3.413 0.895 -3.941 -1.479 1.894 -3.721 -0.117 -2.499 ML 150 148 6 153 4 1 1 67 145 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 1 69 147 -2.917 -3.991 -1.858 -0.919 0.665 -0.588 -0.292 -0.101 D 152 148 6 153 4 0 0 68 146 -6.075 -1.920 -1.072 -2.027 IL 153 153 5 153 4 1 1 75 153 -0.838 -1.359 -4.401 -8.139 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 73 151 -0.341 -2.283 -7.677 0.000 0.000 0.000 0.000 [ MATL 41 ] 128 - g - - - ML 155 154 6 157 3 1 1 15 33 -9.666 -0.006 -8.320 0.265 -0.722 0.290 -0.045 D 156 154 6 157 3 0 0 16 34 -6.282 -1.795 -0.517 IL 157 157 3 157 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 129 - a - - - ML 158 157 3 160 3 1 1 13 32 -9.666 -0.006 -8.320 0.814 -0.811 -0.976 0.219 D 159 157 3 160 3 0 0 15 33 -6.282 -1.795 -0.517 IL 160 160 3 160 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 130 - a - - - ML 161 160 3 163 3 1 1 10 19 -2.239 -0.457 -4.071 0.909 -0.892 -0.692 -0.053 D 162 160 3 163 3 0 0 8 17 -6.282 -1.795 -0.517 IL 163 163 3 163 3 1 1 10 19 -2.815 -0.258 -5.515 0.000 0.000 0.000 0.000 [ MATL 44 ] 132 - A - - - ML 164 163 3 166 2 1 1 1 1 * 0.000 1.259 -1.137 -1.176 -0.495 D 165 163 3 166 2 0 0 0 0 * 0.000 IL 166 166 3 166 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 167 166 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME glnA ACC RF01739 DESC Glutamine riboswitch LENG 53 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 24 14:20:58 2022 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 940 EFFN 52.550125 CKSUM 1904859573 STATS LOCAL MSV -7.4829 0.71917 STATS LOCAL VITERBI -8.2590 0.71917 STATS LOCAL FORWARD -4.0127 0.71917 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17604 1.56433 1.31087 1.54793 1.38629 1.38629 1.38629 1.38629 0.00317 6.44820 6.44820 1.46634 0.26236 0.00000 * 1 0.33382 2.78938 3.38258 1.66919 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.00317 6.44820 6.44820 1.46634 0.26236 1.09861 0.40547 2 1.41259 3.67493 3.32300 0.36371 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.00317 6.44900 6.44900 1.46634 0.26236 1.09861 0.40547 3 6.10372 0.01484 6.02407 4.59773 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 4 4.82509 4.46333 0.03164 4.45741 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 5 7.53377 7.68721 7.76389 0.00142 5 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 6 6.95653 5.70754 7.03069 0.00517 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 7 5.86110 0.13210 2.60134 3.06357 7 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00386 6.45192 6.08705 1.46634 0.26236 1.09861 0.40547 8 0.03398 6.25073 3.53630 6.04754 8 A - - , 1.38629 1.38629 1.38629 1.38629 0.00316 6.45123 6.45123 1.46634 0.26236 0.87069 0.54242 9 1.22097 2.65065 2.45846 0.59987 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 10 4.06056 0.27985 3.76213 1.59145 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.00801 6.45192 5.05199 1.46634 0.26236 1.09861 0.40547 11 2.56695 0.87879 3.12859 0.76751 11 u - - < 1.38629 1.38629 1.38629 1.38629 0.11333 6.44709 2.24847 1.46634 0.26236 1.80087 0.18051 12 2.41168 0.83364 3.04531 0.84796 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.40633 6.33730 1.10219 1.46634 0.26236 1.75986 0.18883 13 1.72343 1.24818 1.43053 1.21964 13 u - - < 1.38629 1.38629 1.38629 1.38629 1.16843 0.37603 5.96576 1.06586 0.42225 0.01008 4.60245 14 1.22250 2.35804 1.85181 0.78977 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00901 6.45117 4.90698 1.46634 0.26236 1.24629 0.33907 15 1.26842 2.14635 2.42088 0.66754 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01149 6.44533 4.62128 1.46634 0.26236 0.41564 1.07857 16 0.90358 1.83400 2.71603 0.99703 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07447 6.44300 2.65684 1.46634 0.26236 1.77787 0.18512 17 0.93078 2.60878 1.78282 1.01069 40 a - - _ 1.38629 1.38629 1.38629 1.38629 1.38989 0.62496 1.53425 1.65808 0.21134 0.93679 0.49739 18 1.42639 1.53008 1.12493 1.52037 91 g - - > 1.38629 1.38629 1.38629 1.38629 0.06478 6.17268 2.80279 1.46634 0.26236 0.22120 1.61724 19 0.94284 2.79613 0.79802 2.31047 92 g - - > 1.38629 1.38629 1.38629 1.38629 0.00347 6.35715 6.35715 1.46634 0.26236 0.08752 2.47931 20 0.81431 3.22225 0.83147 2.50370 93 a - - > 1.38629 1.38629 1.38629 1.38629 0.00318 6.44709 6.44709 1.46634 0.26236 0.40094 1.10773 21 1.62292 3.80206 0.27231 3.97740 94 G - - > 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 22 0.63698 2.59611 2.53623 1.14765 95 A - - > 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 23 5.97626 0.03105 6.24140 3.64618 96 C - - , 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 24 5.85237 7.07403 0.00543 6.37931 97 G - - , 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 25 4.34840 2.44434 0.11017 5.38094 98 G - - , 1.38629 1.38629 1.38629 1.38629 0.00382 6.10333 6.45192 1.08736 0.41114 1.09861 0.40547 26 0.00425 6.88726 6.38525 6.48071 100 A - - , 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 27 0.00425 6.88726 6.38525 6.48071 101 A - - , 1.38629 1.38629 1.38629 1.38629 0.01007 6.45192 4.77462 1.46634 0.26236 1.09861 0.40547 28 4.29724 6.99597 0.01645 6.32409 102 G - - , 1.38629 1.38629 1.38629 1.38629 0.00318 6.44503 6.44503 1.46634 0.26236 1.99485 0.14622 29 6.87005 6.31200 7.57710 0.00337 103 U - - , 1.38629 1.38629 1.38629 1.38629 0.01498 6.44503 4.32133 1.46634 0.26236 0.31755 1.30170 30 0.00430 6.87580 6.37438 6.47016 104 A - - , 1.38629 1.38629 1.38629 1.38629 0.01070 6.44024 4.70560 1.46634 0.26236 2.33815 0.10149 31 1.20358 3.28321 0.46102 3.45038 105 G - - < 1.38629 1.38629 1.38629 1.38629 0.00322 6.43276 6.43276 1.46634 0.26236 2.70998 0.06886 32 1.85583 2.40528 0.36468 2.82995 106 G - - < 1.38629 1.38629 1.38629 1.38629 0.08831 6.43276 2.48996 1.46634 0.26236 2.70998 0.06886 33 2.57830 0.64938 2.25063 1.21606 107 C - - < 1.38629 1.38629 1.38629 1.38629 0.35555 1.21248 6.34796 0.87342 0.54047 0.03097 3.49031 34 1.20193 2.00641 1.04739 1.54149 128 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00609 6.45192 5.40482 1.46634 0.26236 1.09861 0.40547 35 0.70287 2.13992 2.30742 1.24599 129 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00317 6.44900 6.44900 1.46634 0.26236 1.57885 0.23094 36 0.62822 2.21560 1.95366 1.53424 130 A - - _ 1.38629 1.38629 1.38629 1.38629 0.32719 1.42299 3.26858 0.01308 4.34331 0.53175 0.88571 37 0.38471 2.42736 2.43692 1.94034 132 A - - _ 1.38629 1.38629 1.38629 1.38629 0.61074 0.93704 2.72931 1.72891 0.19538 0.07986 2.56713 38 1.33890 2.31223 0.56863 2.62383 215 G - - > 1.38629 1.38629 1.38629 1.38629 0.02386 6.38865 3.82147 1.46634 0.26236 0.04895 3.04136 39 2.90967 0.38573 2.34682 1.77267 216 C - - > 1.38629 1.38629 1.38629 1.38629 0.00322 6.43276 6.43276 1.46634 0.26236 2.70998 0.06886 40 3.62291 0.67301 3.17918 0.86393 217 C - - > 1.38629 1.38629 1.38629 1.38629 0.01949 6.43276 4.03440 1.46634 0.26236 0.14280 2.01683 41 3.97445 3.40188 0.06598 4.44420 218 G - - , 1.38629 1.38629 1.38629 1.38629 0.00321 6.43601 6.43601 1.46634 0.26236 2.56534 0.08001 42 0.00431 6.87165 6.37045 6.46634 219 A - - , 1.38629 1.38629 1.38629 1.38629 0.00321 6.43601 6.43601 1.46634 0.26236 0.16698 1.87220 43 0.02877 3.81008 5.83504 5.71781 220 A - - , 1.38629 1.38629 1.38629 1.38629 0.00490 6.45192 5.71194 1.46634 0.26236 1.09861 0.40547 44 5.85076 7.07238 0.00544 6.37769 221 G - - , 1.38629 1.38629 1.38629 1.38629 0.00317 6.45019 6.45019 1.46634 0.26236 0.67000 0.71684 45 3.13368 2.60678 0.12885 5.63761 222 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 46 0.01232 7.17894 4.67147 6.15475 223 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 47 0.00392 7.94826 6.41626 6.25573 224 A - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 48 5.96676 0.06315 3.69084 3.39083 225 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 49 4.90610 6.17607 0.02553 4.15244 226 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 50 3.57858 0.15444 2.45415 3.53178 227 C - - : 1.38629 1.38629 1.38629 1.38629 0.00316 6.45192 6.45192 1.46634 0.26236 1.09861 0.40547 51 0.58386 3.87714 1.03135 2.73302 228 A - - : 1.38629 1.38629 1.38629 1.38629 0.00318 6.44504 6.44504 1.46634 0.26236 1.09861 0.40547 52 1.78057 1.17247 1.89239 0.99116 229 u - - : 1.38629 1.38629 1.38629 1.38629 0.00318 6.44504 6.44504 1.46634 0.26236 1.09861 0.40547 53 1.51108 1.06517 1.65006 1.41625 230 c - - : 1.38629 1.38629 1.38629 1.38629 0.00159 6.44345 * 1.46634 0.26236 0.00000 * //