INFERNAL1/a [1.1.5 | Sep 2023] NAME gabT ACC RF01738 DESC gabT RNA STATES 187 NODES 43 CLEN 61 W 80 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 10:41:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01738/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17 EFFN 4.694092 CKSUM 568870350 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 46.30 NC 44.50 EFP7GF -12.3753 0.71919 ECMLC 0.58116 -6.10325 4.09952 1600000 451116 0.002660 ECMGC 0.45184 -14.85519 -2.14158 1600000 124985 0.003200 ECMLI 0.58767 -3.15954 6.39809 1600000 329977 0.003637 ECMGI 0.47987 -10.48728 0.77392 1600000 88913 0.004499 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 80 100 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 IL 1 1 2 1 6 1 10 81 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 11 81 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 70 g c - - MP 3 2 3 7 6 2 14 80 100 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -3.368 -2.507 0.069 1.000 -3.905 -4.088 0.294 -3.856 -3.597 2.911 -3.998 0.678 0.059 -3.347 -1.538 -0.973 ML 4 2 3 7 6 1 9 78 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 8 78 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 4 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 10 79 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 10 79 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 69 G C - - MP 9 8 6 13 6 2 13 78 98 -9.486 -9.425 -0.044 -5.501 -8.481 -8.876 -5.361 -3.494 -5.473 0.547 -6.442 -5.151 -1.529 -5.874 -4.872 3.706 -5.179 -1.181 -1.815 -4.956 -3.593 -4.344 ML 10 8 6 13 6 1 8 76 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 8 76 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 4 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 9 77 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 10 77 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 68 c g - - MP 15 14 6 19 6 2 12 76 96 -9.458 -9.398 -0.017 -8.174 -8.454 -8.849 -3.484 -3.436 -3.537 0.849 -2.761 -4.313 2.348 -3.359 -3.509 0.459 -4.014 -1.410 2.022 -3.721 1.215 -2.422 ML 16 14 6 19 6 1 8 74 95 -6.654 -7.000 -0.866 -1.408 -6.850 -4.379 -0.052 -0.429 -0.657 0.730 MR 17 14 6 19 6 1 7 74 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 4 72 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 9 75 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 9 75 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 67 G C - - MP 21 20 6 25 6 2 10 74 94 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -4.487 -3.226 -4.384 0.306 -4.463 -4.746 1.361 -4.628 -4.427 3.327 -4.736 -0.911 -0.332 -4.262 -1.893 -3.294 ML 22 20 6 25 6 1 7 72 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 72 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 70 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 8 73 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 73 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 66 G C - - MP 27 26 6 31 6 2 8 72 92 -9.486 -9.425 -0.179 -8.201 -8.481 -3.212 -4.773 -3.293 -4.698 0.148 -5.009 -4.839 0.716 -5.031 -4.607 3.522 -4.892 -0.987 -0.774 -4.441 -2.368 -3.617 ML 28 26 6 31 6 1 6 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 70 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 3 69 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 71 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 65 c g - - MP 33 32 6 37 4 2 8 70 91 -7.459 -2.958 -0.233 -6.080 -3.910 -3.566 -3.843 0.217 -2.970 -4.519 2.927 -3.581 -3.834 1.802 -4.262 -1.351 0.905 -4.057 -0.585 -2.673 ML 34 32 6 37 4 1 4 69 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 3 68 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 3 69 90 -1.682 -1.310 -3.933 -2.187 IL 37 37 5 37 4 1 7 70 91 -1.669 -3.374 -0.806 -5.860 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 6 69 90 -1.555 -0.658 -5.279 0.000 0.000 0.000 0.000 [ MATL 7 ] 9 - C - - - ML 39 38 6 41 3 1 6 67 88 -8.754 -0.012 -7.408 -1.840 1.390 -2.757 -0.070 D 40 38 6 41 3 0 1 65 86 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 5 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 10 - c - - - ML 42 41 3 44 3 1 5 66 87 -8.754 -0.012 -7.408 0.148 0.294 -0.508 -0.055 D 43 41 3 44 3 0 1 64 85 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 4 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - g - - - ML 45 44 3 47 3 1 4 65 86 -8.754 -0.012 -7.408 -0.685 -0.864 0.671 0.305 D 46 44 3 47 3 0 0 63 84 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 4 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - G - - - ML 48 47 3 50 3 1 3 64 85 -2.440 -0.304 -7.408 -1.548 -1.365 1.593 -1.984 D 49 47 3 50 3 0 0 60 81 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 3 65 85 -1.292 -0.819 -5.345 0.000 0.000 0.000 0.000 [ MATL 11 ] 15 - a - - - ML 51 50 3 53 3 1 2 60 78 -8.754 -0.157 -3.314 0.715 -1.360 0.602 -1.148 D 52 50 3 53 3 0 0 59 78 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 2 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 16 - a - - - ML 54 53 3 56 3 1 1 59 77 -8.967 -0.074 -4.382 0.565 -0.028 -0.248 -0.520 D 55 53 3 56 3 0 0 57 76 -6.562 -0.335 -2.345 IL 56 56 3 56 3 1 1 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 62 - a - - MR 57 56 3 59 3 1 1 58 76 -9.049 -0.073 -4.401 0.206 -0.169 -0.199 0.119 D 58 56 3 59 3 0 0 56 75 -7.003 -2.181 -0.374 IR 59 59 3 59 3 1 1 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 61 - u - - MR 60 59 3 62 3 1 2 57 75 -8.988 -0.012 -7.306 -0.312 -0.072 -0.270 0.500 D 61 59 3 62 3 0 0 55 74 -7.450 -0.552 -1.680 IR 62 62 3 62 3 1 1 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 60 - C - - MR 63 62 3 65 3 1 2 56 74 -9.104 -0.011 -7.422 -3.560 1.890 -4.311 -2.669 D 64 62 3 65 3 0 0 54 73 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 59 - C - - MR 66 65 3 68 3 1 1 55 73 -9.104 -0.011 -7.422 -2.224 1.596 -3.125 -0.627 D 67 65 3 68 3 0 0 53 71 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 58 - U - - MR 69 68 3 71 3 1 1 54 72 -1.475 -0.880 -3.369 -1.916 -0.824 -2.675 1.591 D 70 68 3 71 3 0 0 51 70 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 53 72 -1.871 -0.491 -6.058 0.000 0.000 0.000 0.000 [ MATR 18 ] - 55 - c - - MR 72 71 3 74 3 1 1 51 70 -8.967 -0.012 -7.284 0.170 0.408 -0.283 -0.461 D 73 71 3 74 3 0 0 50 69 -7.576 -0.497 -1.806 IR 74 74 3 74 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 54 - a - - MR 75 74 3 77 5 1 1 50 69 -7.804 -0.024 -7.619 -7.831 -8.723 0.936 -2.259 0.657 -1.730 D 76 74 3 77 5 0 0 49 68 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 51 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 53 g c - - MP 78 77 3 82 6 2 2 49 68 -9.486 -9.425 -0.048 -8.201 -5.364 -8.876 -2.231 -2.086 -2.384 1.293 -2.484 -1.522 0.949 -2.763 -2.484 2.221 -2.999 0.431 0.783 -0.935 0.500 -1.588 ML 79 77 3 82 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 49 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 52 c g - - MP 84 83 6 88 6 2 2 47 66 -9.454 -9.393 -0.017 -8.170 -8.450 -8.845 -2.197 -1.940 -2.424 0.889 -2.338 -0.641 1.699 -2.656 -2.381 1.560 -2.837 0.891 1.033 -2.492 0.623 -1.560 ML 85 83 6 88 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 46 65 -7.391 -6.120 -1.032 -6.098 -1.232 -4.312 0.041 -0.845 0.678 -0.296 D 87 83 6 88 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 47 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 51 c g - - MP 90 89 6 94 6 2 2 45 64 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -3.032 -3.028 -3.149 0.560 -0.307 -3.988 2.513 -3.118 -3.136 1.049 -3.678 -0.427 1.742 -3.306 -0.340 -2.112 ML 91 89 6 94 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 44 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 45 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 50 c g - - MP 96 95 6 100 6 2 2 43 62 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -3.219 -3.280 -3.297 0.194 -2.683 -1.047 2.674 -3.250 -3.310 0.278 -3.816 -1.487 1.902 -3.481 0.723 -2.313 ML 97 95 6 100 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 42 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 43 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 49 G C - - MP 102 101 6 106 6 2 2 41 60 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -3.627 -0.192 -3.637 0.863 -4.310 -1.653 0.078 -4.154 -3.785 3.018 -4.076 1.010 -0.182 -3.497 -1.807 -2.646 ML 103 101 6 106 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 41 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 48 c g - - MP 108 107 6 112 6 2 2 39 58 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -3.309 -3.183 -3.392 1.294 -2.752 -4.215 2.490 -3.292 -3.373 1.290 -3.897 -1.124 1.554 -3.542 0.036 -2.284 ML 109 107 6 112 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 47 G C - - MP 114 113 6 118 6 2 2 37 56 -9.486 -3.316 -0.168 -8.201 -8.481 -8.876 -3.838 -0.628 -3.747 1.106 -4.477 -4.354 0.130 -4.292 -4.020 3.143 -4.347 -0.353 0.657 -3.651 -1.834 -2.727 ML 115 113 6 118 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 36 55 -3.229 -0.260 -6.740 -4.908 -6.014 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 45 g c - - MP 120 119 6 124 6 2 2 35 54 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -3.504 -1.270 -3.452 1.597 -4.058 -4.135 0.322 -3.978 -3.735 2.801 -4.099 0.645 0.745 -3.402 -1.574 -2.475 ML 121 119 6 124 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 44 C G - - MP 126 125 6 130 6 2 2 33 52 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -6.298 -6.351 -5.662 -2.525 -4.108 -5.843 3.862 -5.108 -5.835 -2.442 -5.840 -4.398 -0.845 -6.247 -1.924 -4.639 ML 127 125 6 130 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 43 A U - - MP 132 131 6 136 6 2 2 31 50 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -5.303 -4.061 -5.064 3.821 -6.341 -7.621 -1.953 -5.008 -5.076 -0.578 -5.687 -1.371 -2.338 -6.463 -3.876 -3.933 ML 133 131 6 136 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 42 G C - - MP 138 137 6 142 6 2 2 29 48 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -6.228 -3.832 -6.653 -0.871 -7.263 -5.242 -2.263 -6.873 -5.181 3.856 -5.440 -1.621 -2.624 -5.402 -4.412 -5.511 ML 139 137 6 142 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 28 41 U G - - MP 144 143 6 148 4 2 2 27 46 -7.648 -8.893 -0.046 -5.347 -5.147 -5.237 -4.707 -1.470 -3.255 -5.009 1.057 -4.103 -4.767 -1.370 -4.992 -3.357 1.959 -5.131 3.124 -3.596 ML 145 143 6 148 4 1 1 27 45 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 26 45 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 24 43 -12.737 -14.007 -2.036 -0.404 IL 148 148 5 148 4 1 1 27 45 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 40 - U - - MR 150 149 6 152 3 1 1 25 44 -9.104 -0.011 -7.422 -2.968 -2.727 -3.747 1.867 D 151 149 6 152 3 0 0 24 42 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 39 - A - - MR 153 152 3 155 3 1 1 24 43 -9.104 -0.011 -7.422 1.910 -3.919 -3.417 -3.611 D 154 152 3 155 3 0 0 23 41 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 38 - c - - MR 156 155 3 158 5 1 1 23 42 -7.804 -0.024 -7.619 -7.831 -8.723 0.034 0.476 -1.528 0.309 D 157 155 3 158 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 29 37 C G - - MP 159 158 3 163 6 2 2 22 41 -9.486 -9.425 -0.016 -8.201 -8.481 -8.876 -6.298 -6.351 -5.662 -2.525 -4.108 -5.843 3.862 -5.108 -5.835 -2.442 -5.840 -4.398 -0.845 -6.247 -1.924 -4.639 ML 160 158 3 163 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 30 36 G C - - MP 165 164 6 169 4 2 2 20 39 -7.784 -7.991 -0.030 -6.405 -6.228 -3.832 -6.653 -0.871 -7.263 -5.242 -2.263 -6.873 -5.181 3.856 -5.440 -1.621 -2.624 -5.402 -4.412 -5.511 ML 166 164 6 169 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - A - - - ML 171 170 6 173 3 1 1 17 35 -8.754 -0.012 -7.408 1.910 -3.919 -3.417 -3.611 D 172 170 6 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - U - - - ML 174 173 3 176 3 1 1 16 34 -8.754 -0.012 -7.408 -2.968 -2.727 -3.747 1.867 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - C - - - ML 177 176 3 179 3 1 1 14 33 -8.754 -0.012 -7.408 -3.560 1.890 -4.311 -2.669 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - A - - - ML 180 179 3 182 3 1 1 12 31 -8.754 -0.012 -7.408 1.910 -3.919 -3.417 -3.611 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - U - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -0.141 -1.475 -1.888 1.301 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME gabT ACC RF01738 DESC gabT RNA LENG 61 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 10:41:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01738/CM NSEQ 17 EFFN 10.587646 CKSUM 568870350 STATS LOCAL MSV -7.9864 0.71919 STATS LOCAL VITERBI -8.6099 0.71919 STATS LOCAL FORWARD -3.7434 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.72441 1.15548 1.19642 1.58697 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 0.00000 * 1 1.59304 3.13319 0.40785 2.43001 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 2 2.46158 4.57528 0.11310 4.47957 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 3 2.15633 1.09024 2.59254 0.74805 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 4 3.14602 1.72965 0.29383 3.37461 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 5 3.29981 2.25990 0.18001 3.75116 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.15363 4.89364 2.00309 1.46634 0.26236 1.09861 0.40547 6 3.18765 0.48567 1.39001 2.36047 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.07227 2.79473 4.75733 0.26061 1.47222 0.10534 2.30274 7 3.45136 0.31331 4.14055 1.50797 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 8 1.31225 1.05895 1.75264 1.55755 10 c - - - 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 9 2.33143 2.15971 0.74350 1.16463 11 g - - - 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 10 3.23331 2.31975 0.18040 3.59940 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.25778 1.51529 4.89364 0.60807 0.78614 1.09861 0.40547 11 0.81932 2.62701 0.83840 2.90823 15 a - - - 1.38629 1.38629 1.38629 1.38629 0.13403 4.89364 2.13760 1.46634 0.26236 1.09861 0.40547 12 0.92968 1.29727 1.53142 2.15575 16 a - - - 1.38629 1.38629 1.38629 1.38629 0.01699 4.77660 4.77660 1.46634 0.26236 0.11964 2.18253 13 1.77193 2.20746 0.70828 1.48049 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.06277 4.89364 2.93103 1.46634 0.26236 1.09861 0.40547 14 2.23285 1.21848 1.03637 1.41734 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.01583 4.84670 4.84670 1.46634 0.26236 0.24763 1.51708 15 2.59933 0.69707 1.76248 1.36253 19 c - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 16 3.29440 0.62278 3.08741 0.96539 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 17 1.86739 2.71814 0.30629 3.13958 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 18 1.73468 0.88468 1.79343 1.40933 22 c - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 19 1.75106 3.06205 0.42057 2.09602 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 20 1.44048 2.87552 0.55036 2.03978 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 21 5.13988 0.03101 5.15265 3.96881 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 22 0.04023 5.01140 3.70403 4.81071 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 23 3.84118 4.89139 0.03733 4.87113 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 24 4.39293 2.64366 4.31528 0.10184 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 25 5.24752 0.02950 5.22477 3.99387 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 26 3.86047 4.92531 0.03628 4.91826 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 27 0.02230 5.12857 4.73589 4.91254 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 28 4.46027 4.18760 5.01950 0.03392 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 29 4.81161 0.02950 5.18215 4.17862 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 30 0.02230 5.12857 4.73589 4.91254 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 31 1.52626 3.09687 3.45233 0.34844 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 32 5.01531 0.04464 4.84695 3.53464 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 33 4.27437 5.42528 0.02432 5.16686 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 34 1.40061 0.92051 2.93374 1.19720 38 c - - - 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 35 0.02230 5.12857 4.73589 4.91254 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 36 4.46027 4.18760 5.01950 0.03392 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 37 1.37069 4.44970 0.33033 4.15387 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 38 4.89097 0.04686 4.77484 3.51225 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 39 4.95892 4.11727 4.80983 0.03196 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 40 4.16910 5.23251 0.02821 4.96052 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 41 2.15961 0.70226 2.67677 1.13825 45 c - - > 1.38629 1.38629 1.38629 1.38629 0.25638 1.52025 4.89364 0.06719 2.73363 1.09861 0.40547 42 2.20167 0.38678 2.86984 1.87450 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 43 1.68470 1.89450 0.75942 1.62877 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 44 3.37079 0.37781 3.08935 1.44926 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 45 1.34321 2.47753 0.49855 3.04429 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 46 1.22843 2.06504 0.78527 2.08393 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 47 2.10912 1.34186 1.01964 1.36034 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 48 2.56165 0.76614 1.66820 1.31144 53 c - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 49 0.64986 3.93753 0.83663 3.68015 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.13403 4.89364 2.13760 1.46634 0.26236 1.09861 0.40547 50 1.30045 0.94214 1.54454 2.08435 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.70334 0.69988 4.77660 0.34599 1.22937 0.11964 2.18253 51 3.52979 2.05672 4.05189 0.19185 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 52 3.78127 0.18648 4.40142 2.00194 59 C - - - 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 53 4.81161 0.02950 5.18215 4.17862 60 C - - - 1.38629 1.38629 1.38629 1.38629 0.11545 4.89364 2.28728 1.46634 0.26236 1.09861 0.40547 54 1.80098 1.38011 1.51538 1.01174 61 u - - - 1.38629 1.38629 1.38629 1.38629 0.01668 4.79487 4.79487 1.46634 0.26236 0.73827 0.64997 55 1.26034 1.45757 1.48280 1.36009 62 a - - - 1.38629 1.38629 1.38629 1.38629 0.20637 2.09066 2.76677 0.73778 0.65043 2.21023 0.11617 56 2.62577 1.42845 0.45370 2.94380 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.01676 4.79012 4.79012 1.46634 0.26236 0.13245 2.08702 57 4.01451 0.19168 2.22480 3.03049 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 58 3.67866 0.30582 1.69562 2.90512 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.05641 4.89364 3.05018 1.46634 0.26236 1.09861 0.40547 59 1.24624 2.78691 0.65117 2.04506 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.01573 4.85296 4.85296 1.46634 0.26236 0.27501 1.42532 60 4.64682 0.12567 4.43437 2.33677 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.01510 4.89364 4.89364 1.46634 0.26236 1.09861 0.40547 61 3.23981 0.60090 1.82212 1.38298 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.00758 4.88611 * 1.46634 0.26236 0.00000 * //