INFERNAL1/a [1.1.4 | Dec 2020] NAME gabT ACC RF01738 DESC gabT RNA STATES 187 NODES 43 CLEN 61 W 80 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:38:48 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17 EFFN 4.685791 CKSUM 568870350 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 49.30 NC 42.00 EFP7GF -12.2903 0.71919 ECMLC 0.57630 -6.23762 4.06690 1600000 455227 0.002636 ECMGC 0.44439 -14.99932 -2.12108 1600000 122325 0.003270 ECMLI 0.58581 -3.18755 6.41664 1600000 333133 0.003602 ECMGI 0.48480 -10.25327 0.88064 1600000 88357 0.004527 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 80 100 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 IL 1 1 2 1 6 1 10 81 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 11 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 70 g c - - MP 3 2 3 7 6 2 14 80 100 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -3.372 -2.507 0.034 1.002 -3.912 -4.089 0.294 -3.860 -3.602 2.920 -4.001 0.647 0.059 -3.348 -1.540 -0.955 ML 4 2 3 7 6 1 9 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 8 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 4 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 10 79 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 10 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 69 G C - - MP 9 8 6 13 6 2 13 78 98 -9.485 -9.424 -0.042 -5.599 -8.480 -8.875 -5.414 -3.518 -5.540 0.467 -6.499 -5.158 -1.580 -5.934 -4.893 3.719 -5.198 -1.211 -1.868 -4.988 -3.649 -4.410 ML 10 8 6 13 6 1 8 76 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 8 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 4 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 10 77 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 10 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 68 c g - - MP 15 14 6 19 6 2 12 76 96 -9.459 -9.399 -0.017 -8.175 -8.455 -8.850 -3.515 -3.465 -3.562 0.798 -2.773 -4.333 2.360 -3.375 -3.534 0.438 -4.036 -1.435 2.015 -3.749 1.264 -2.444 ML 16 14 6 19 6 1 8 74 95 -6.626 -6.972 -0.889 -1.381 -6.822 -4.351 -0.029 -0.419 -0.632 0.702 MR 17 14 6 19 6 1 7 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 4 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 9 75 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 9 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 67 G C - - MP 21 20 6 25 6 2 10 74 94 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -4.501 -3.225 -4.399 0.301 -4.496 -4.749 1.320 -4.651 -4.437 3.342 -4.744 -0.911 -0.358 -4.269 -1.921 -3.310 ML 22 20 6 25 6 1 7 72 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 8 73 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 66 G C - - MP 27 26 6 31 6 2 8 72 92 -9.485 -9.424 -0.190 -8.200 -8.480 -3.130 -4.766 -3.290 -4.690 0.153 -4.998 -4.836 0.726 -5.022 -4.603 3.519 -4.888 -0.984 -0.765 -4.436 -2.359 -3.609 ML 28 26 6 31 6 1 6 70 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 70 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 3 69 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 71 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 65 c g - - MP 33 32 6 37 4 2 8 70 90 -7.435 -2.925 -0.239 -6.056 -3.869 -3.512 -3.808 0.260 -2.962 -4.488 2.884 -3.563 -3.803 1.858 -4.233 -1.299 0.918 -4.014 -0.578 -2.643 ML 34 32 6 37 4 1 4 69 89 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 3 68 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 3 69 90 -1.496 -1.429 -3.990 -2.244 IL 37 37 5 37 4 1 7 70 90 -1.584 -3.547 -0.822 -6.032 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 6 69 90 -1.541 -0.666 -5.269 0.000 0.000 0.000 0.000 [ MATL 7 ] 9 - C - - - ML 39 38 6 41 3 1 6 67 87 -8.752 -0.012 -7.406 -1.860 1.405 -2.777 -0.104 D 40 38 6 41 3 0 1 65 86 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 5 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 10 - c - - - ML 42 41 3 44 3 1 5 66 86 -8.752 -0.012 -7.406 0.127 0.271 -0.442 -0.051 D 43 41 3 44 3 0 1 64 85 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 4 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 11 - g - - - ML 45 44 3 47 3 1 4 65 85 -8.752 -0.012 -7.406 -0.695 -0.910 0.697 0.297 D 46 44 3 47 3 0 0 63 83 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 4 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 12 - G - - - ML 48 47 3 50 3 1 3 64 84 -2.294 -0.340 -7.406 -1.542 -1.355 1.591 -1.976 D 49 47 3 50 3 0 0 60 80 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 3 64 85 -1.324 -0.794 -5.404 0.000 0.000 0.000 0.000 [ MATL 11 ] 15 - a - - - ML 51 50 3 53 3 1 2 60 78 -8.752 -0.158 -3.303 0.695 -1.178 0.540 -1.046 D 52 50 3 53 3 0 0 59 78 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 2 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 16 - a - - - ML 54 53 3 56 3 1 1 59 77 -8.964 -0.099 -3.964 0.522 0.005 -0.222 -0.508 D 55 53 3 56 3 0 0 57 76 -6.566 -0.334 -2.349 IL 56 56 3 56 3 1 1 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 62 - a - - MR 57 56 3 59 3 1 1 58 76 -9.025 -0.079 -4.285 0.195 -0.158 -0.232 0.147 D 58 56 3 59 3 0 0 56 74 -7.183 -2.361 -0.325 IR 59 59 3 59 3 1 1 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 61 - u - - MR 60 59 3 62 3 1 2 57 75 -8.958 -0.012 -7.276 -0.306 -0.116 -0.259 0.519 D 61 59 3 62 3 0 0 55 74 -7.611 -0.483 -1.841 IR 62 62 3 62 3 1 1 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 60 - C - - MR 63 62 3 65 3 1 2 56 74 -9.103 -0.011 -7.420 -3.556 1.890 -4.308 -2.666 D 64 62 3 65 3 0 0 54 73 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 59 - C - - MR 66 65 3 68 3 1 1 55 73 -9.103 -0.011 -7.420 -2.216 1.593 -3.117 -0.618 D 67 65 3 68 3 0 0 53 71 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 58 - U - - MR 69 68 3 71 3 1 1 54 72 -1.421 -0.919 -3.358 -1.911 -0.816 -2.670 1.589 D 70 68 3 71 3 0 0 51 70 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 53 72 -1.876 -0.488 -6.095 0.000 0.000 0.000 0.000 [ MATR 18 ] - 55 - c - - MR 72 71 3 74 3 1 1 51 70 -8.964 -0.012 -7.282 0.158 0.400 -0.255 -0.460 D 73 71 3 74 3 0 0 50 69 -7.581 -0.495 -1.811 IR 74 74 3 74 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 54 - a - - MR 75 74 3 77 5 1 1 50 69 -7.802 -0.024 -7.618 -7.830 -8.721 0.917 -2.258 0.679 -1.727 D 76 74 3 77 5 0 0 49 68 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 51 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 53 g c - - MP 78 77 3 82 6 2 2 49 68 -9.485 -9.424 -0.060 -8.200 -4.941 -8.875 -2.242 -2.094 -2.392 1.293 -2.495 -1.500 0.945 -2.773 -2.495 2.237 -3.010 0.405 0.778 -1.022 0.522 -1.596 ML 79 77 3 82 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 49 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 52 c g - - MP 84 83 6 88 6 2 2 47 66 -9.441 -9.380 -0.017 -8.157 -8.437 -8.832 -2.187 -1.922 -2.416 0.895 -2.328 -0.626 1.721 -2.645 -2.369 1.548 -2.822 0.878 1.044 -2.483 0.573 -1.551 ML 85 83 6 88 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 46 65 -7.520 -6.249 -0.908 -6.227 -1.361 -4.441 -0.071 -0.978 0.837 -0.409 D 87 83 6 88 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 47 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 51 c g - - MP 90 89 6 94 6 2 2 45 64 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -3.039 -3.034 -3.156 0.557 -0.295 -3.994 2.537 -3.122 -3.143 1.020 -3.684 -0.386 1.711 -3.313 -0.341 -2.117 ML 91 89 6 94 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 44 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 45 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 50 c g - - MP 96 95 6 100 6 2 2 43 62 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -3.221 -3.281 -3.298 0.195 -2.683 -1.017 2.674 -3.251 -3.311 0.280 -3.817 -1.486 1.926 -3.482 0.652 -2.314 ML 97 95 6 100 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 42 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 43 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 49 g c - - MP 102 101 6 106 6 2 2 41 60 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -3.568 -0.283 -3.599 0.868 -4.241 -1.259 0.106 -4.098 -3.722 2.995 -4.010 1.017 -0.155 -3.461 -1.767 -2.609 ML 103 101 6 106 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 41 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 48 c g - - MP 108 107 6 112 6 2 2 39 58 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -3.303 -3.175 -3.387 1.314 -2.751 -4.209 2.476 -3.290 -3.369 1.299 -3.893 -1.117 1.567 -3.536 -0.003 -2.280 ML 109 107 6 112 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 47 G C - - MP 114 113 6 118 6 2 2 37 56 -9.485 -3.378 -0.161 -8.200 -8.480 -8.875 -3.845 -0.670 -3.754 1.093 -4.486 -4.358 0.126 -4.299 -4.026 3.150 -4.352 -0.356 0.660 -3.657 -1.840 -2.734 ML 115 113 6 118 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 36 55 -3.201 -0.265 -6.713 -4.880 -5.986 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 45 g c - - MP 120 119 6 124 6 2 2 35 54 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -3.482 -1.246 -3.435 1.636 -4.025 -4.121 0.335 -3.956 -3.714 2.784 -4.081 0.596 0.757 -3.389 -1.555 -2.461 ML 121 119 6 124 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 44 C G - - MP 126 125 6 130 6 2 2 33 52 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -6.294 -6.347 -5.659 -2.520 -4.105 -5.841 3.861 -5.104 -5.831 -2.438 -5.837 -4.393 -0.842 -6.243 -1.921 -4.636 ML 127 125 6 130 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 43 A U - - MP 132 131 6 136 6 2 2 31 50 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -5.299 -4.058 -5.061 3.820 -6.336 -7.616 -1.948 -5.006 -5.073 -0.574 -5.684 -1.368 -2.333 -6.459 -3.872 -3.930 ML 133 131 6 136 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 42 G C - - MP 138 137 6 142 6 2 2 29 48 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -6.225 -3.830 -6.649 -0.868 -7.259 -5.240 -2.260 -6.869 -5.179 3.856 -5.439 -1.620 -2.621 -5.401 -4.409 -5.506 ML 139 137 6 142 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 28 41 U G - - MP 144 143 6 148 4 2 2 27 46 -7.646 -8.891 -0.046 -5.345 -5.160 -5.252 -4.714 -1.486 -3.256 -5.012 1.056 -4.107 -4.775 -1.386 -4.997 -3.375 1.915 -5.141 3.145 -3.603 ML 145 143 6 148 4 1 1 27 45 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 26 45 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 24 43 -12.737 -14.007 -2.036 -0.404 IL 148 148 5 148 4 1 1 27 45 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 40 - U - - MR 150 149 6 152 3 1 1 25 44 -9.103 -0.011 -7.420 -2.965 -2.724 -3.744 1.866 D 151 149 6 152 3 0 0 24 42 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 39 - A - - MR 153 152 3 155 3 1 1 24 43 -9.103 -0.011 -7.420 1.910 -3.915 -3.414 -3.607 D 154 152 3 155 3 0 0 23 41 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 38 - c - - MR 156 155 3 158 5 1 1 23 42 -7.802 -0.024 -7.618 -7.830 -8.721 -0.004 0.534 -1.556 0.280 D 157 155 3 158 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 29 37 C G - - MP 159 158 3 163 6 2 2 22 41 -9.485 -9.424 -0.016 -8.200 -8.480 -8.875 -6.294 -6.347 -5.659 -2.520 -4.105 -5.841 3.861 -5.104 -5.831 -2.438 -5.837 -4.393 -0.842 -6.243 -1.921 -4.636 ML 160 158 3 163 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 30 36 G C - - MP 165 164 6 169 4 2 2 20 39 -7.782 -7.989 -0.030 -6.403 -6.225 -3.830 -6.649 -0.868 -7.259 -5.240 -2.260 -6.869 -5.179 3.856 -5.439 -1.620 -2.621 -5.401 -4.409 -5.506 ML 166 164 6 169 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - A - - - ML 171 170 6 173 3 1 1 17 35 -8.752 -0.012 -7.406 1.910 -3.915 -3.414 -3.607 D 172 170 6 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - U - - - ML 174 173 3 176 3 1 1 16 34 -8.752 -0.012 -7.406 -2.965 -2.724 -3.744 1.866 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - C - - - ML 177 176 3 179 3 1 1 14 33 -8.752 -0.012 -7.406 -3.556 1.890 -4.308 -2.666 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - A - - - ML 180 179 3 182 3 1 1 12 31 -8.752 -0.012 -7.406 1.910 -3.915 -3.414 -3.607 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - U - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -0.189 -1.490 -1.917 1.323 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME gabT ACC RF01738 DESC gabT RNA LENG 61 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:38:48 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 17 EFFN 10.579346 CKSUM 568870350 STATS LOCAL MSV -7.9552 0.71919 STATS LOCAL VITERBI -8.6255 0.71919 STATS LOCAL FORWARD -3.7428 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.72994 1.15276 1.19598 1.58703 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 0.00000 * 1 1.60541 3.12559 0.40622 2.41779 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 2 2.53294 4.61088 0.10564 4.52079 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 3 2.20818 1.08010 2.61643 0.73924 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 4 3.15283 1.76308 0.28459 3.39822 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 5 3.29777 2.25222 0.18119 3.74680 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.14739 4.89052 2.04390 1.46634 0.26236 1.09861 0.40547 6 3.13804 0.51274 1.34364 2.33419 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.09375 2.51419 4.76041 0.19963 1.70946 0.10982 2.26329 7 3.46912 0.30346 4.15549 1.53749 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 8 1.33366 1.07623 1.69170 1.55397 10 c - - - 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 9 2.34641 2.21372 0.72392 1.17070 11 g - - - 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 10 3.22945 2.31242 0.18159 3.59503 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.28792 1.41610 4.89052 0.57593 0.82595 1.09861 0.40547 11 0.83222 2.42028 0.88006 2.79262 15 a - - - 1.38629 1.38629 1.38629 1.38629 0.13503 4.89052 2.13037 1.46634 0.26236 1.09861 0.40547 12 0.96882 1.26878 1.50619 2.14096 16 a - - - 1.38629 1.38629 1.38629 1.38629 0.01706 4.77255 4.77255 1.46634 0.26236 0.11917 2.18618 13 1.77460 2.20571 0.70516 1.48613 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.08183 4.89052 2.64430 1.46634 0.26236 1.09861 0.40547 14 2.21699 1.19549 1.04965 1.43360 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.01619 4.82488 4.82488 1.46634 0.26236 0.19194 1.74501 15 2.60575 0.67627 1.77452 1.39403 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 16 3.28911 0.62073 3.08168 0.96949 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 17 1.90320 2.55934 0.31488 3.13098 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 18 1.71594 0.89582 1.78823 1.40783 22 c - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 19 1.77323 3.06829 0.41476 2.09384 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 20 1.40104 2.87121 0.56882 2.03379 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 21 5.13737 0.03107 5.15056 3.96732 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 22 0.04028 5.00974 3.70279 4.80898 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 23 3.84027 4.89019 0.03737 4.86970 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 24 4.39376 2.64367 4.31682 0.10181 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 25 5.24622 0.02954 5.22350 3.99268 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 26 3.85981 4.92453 0.03631 4.91742 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 27 0.02232 5.12760 4.73496 4.91165 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 28 4.45926 4.18667 5.01847 0.03395 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 29 4.81082 0.02952 5.18147 4.17780 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 30 0.02232 5.12760 4.73496 4.91165 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 31 1.56791 3.11184 3.48087 0.33377 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 32 5.01455 0.04467 4.84618 3.53401 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 33 4.27325 5.42410 0.02435 5.16563 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 34 1.43639 0.87404 2.97009 1.22535 38 c - - - 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 35 0.02232 5.12760 4.73496 4.91165 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 36 4.45926 4.18667 5.01847 0.03395 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 37 1.40684 4.45108 0.31783 4.15469 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 38 4.88892 0.04692 4.77330 3.51137 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 39 4.95596 4.11574 4.80768 0.03203 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 40 4.16685 5.22936 0.02829 4.95721 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 41 2.15321 0.71205 2.67232 1.12652 45 c - - > 1.38629 1.38629 1.38629 1.38629 0.24490 1.56206 4.89052 0.07022 2.69108 1.09861 0.40547 42 2.19805 0.38378 2.87572 1.88836 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 43 1.66805 1.88897 0.77524 1.61162 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 44 3.35777 0.38103 3.07878 1.44386 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 45 1.31723 2.46144 0.51295 3.03478 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 46 1.25230 2.09892 0.76562 2.06735 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 47 2.09366 1.35967 1.00353 1.37264 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 48 2.56922 0.76292 1.65635 1.32325 53 c - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 49 0.66378 3.93269 0.82072 3.67324 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.13503 4.89052 2.13037 1.46634 0.26236 1.09861 0.40547 50 1.31329 0.94758 1.51886 2.08405 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.74328 0.66166 4.77255 0.34336 1.23574 0.11917 2.18618 51 3.52755 2.05009 4.04992 0.19301 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 52 3.77529 0.18797 4.39683 1.99423 59 C - - - 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 53 4.81082 0.02952 5.18147 4.17780 60 C - - - 1.38629 1.38629 1.38629 1.38629 0.13981 4.89052 2.09588 1.46634 0.26236 1.09861 0.40547 54 1.79488 1.42018 1.50457 0.99407 61 u - - - 1.38629 1.38629 1.38629 1.38629 0.01714 4.76785 4.76785 1.46634 0.26236 0.84252 0.56322 55 1.27033 1.44933 1.51038 1.33292 62 a - - - 1.38629 1.38629 1.38629 1.38629 0.21355 2.06472 2.72665 0.73759 0.65059 2.43816 0.09137 56 2.59800 1.38244 0.47933 2.89290 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.01718 4.76575 4.76575 1.46634 0.26236 0.11374 2.23021 57 4.00885 0.19303 2.21696 3.02726 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 58 3.70010 0.29663 1.72904 2.90950 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.05322 4.89052 3.11643 1.46634 0.26236 1.09861 0.40547 59 1.25503 2.81169 0.63151 2.09524 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.01573 4.85303 4.85303 1.46634 0.26236 0.29213 1.37307 60 4.68265 0.11782 4.47338 2.40258 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.01515 4.89052 4.89052 1.46634 0.26236 1.09861 0.40547 61 3.23299 0.59153 1.83823 1.39439 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.00760 4.88298 * 1.46634 0.26236 0.00000 * //