INFERNAL1/a [1.1.4 | Dec 2020] NAME flpD ACC RF01737 DESC flpD RNA STATES 145 NODES 35 CLEN 47 W 61 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:38:45 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 8.000000 CKSUM 3678451622 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 45.10 NC 33.00 EFP7GF -8.4978 0.72917 ECMLC 0.72690 -4.02499 4.01090 1600000 413053 0.002905 ECMGC 0.41979 -20.78476 -5.50626 1600000 244056 0.001639 ECMLI 0.71108 -3.27441 4.79341 1600000 372118 0.003225 ECMGI 0.44841 -16.89509 -3.40159 1600000 169758 0.002356 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 61 80 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 IL 1 1 2 1 6 1 8 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 9 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 48 u a - - MP 3 2 3 7 6 2 13 61 80 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.447 -4.293 -4.408 1.048 -3.357 -5.126 2.493 -4.026 -4.344 -0.135 -4.808 -2.066 2.600 -4.630 -0.936 -3.157 ML 4 2 3 7 6 1 6 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 6 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 2 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 8 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 8 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 47 C G - - MP 9 8 6 13 6 2 12 59 78 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -7.457 -7.604 -6.566 -3.829 -4.931 -6.600 3.938 -6.143 -6.935 -3.797 -6.634 -5.792 -1.938 -7.358 -2.946 -5.738 ML 10 8 6 13 6 1 5 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 5 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 2 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 46 A U - - MP 15 14 6 19 6 2 10 57 76 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -5.050 -3.729 -5.160 3.388 -6.687 -7.082 -2.060 -5.315 -4.888 2.080 -5.478 -1.092 -2.211 -5.915 -3.986 -3.849 ML 16 14 6 19 6 1 5 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 45 G A - - MP 21 20 6 25 4 2 9 55 74 -8.394 -8.601 -0.019 -7.015 -5.873 -5.529 -5.445 -1.804 -4.096 -5.862 0.203 -4.854 3.047 -1.915 -5.690 -3.248 2.427 -6.024 -1.789 -4.294 ML 22 20 6 25 4 1 4 56 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 3 56 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 2 55 74 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 6 58 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 5 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 27 26 6 29 3 1 7 53 72 -9.343 -0.008 -7.997 1.549 -3.242 -0.259 -2.923 D 28 26 6 29 3 0 1 52 71 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 5 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 30 29 3 32 3 1 7 52 71 -9.343 -0.008 -7.997 -3.927 -3.576 -4.722 1.931 D 31 29 3 32 3 0 1 51 70 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 4 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 33 32 3 35 3 1 6 51 70 -9.343 -0.008 -7.997 -3.947 -5.438 1.954 -4.682 D 34 32 3 35 3 0 0 50 69 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 36 35 3 38 3 1 5 50 69 -9.343 -0.008 -7.997 1.955 -4.897 -4.349 -4.612 D 37 35 3 38 3 0 0 49 68 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 3 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 39 38 3 41 3 1 5 49 68 -9.674 -0.007 -7.992 -1.297 0.724 -1.018 0.534 D 40 38 3 41 3 0 0 48 66 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 2 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 44 - G - - MR 42 41 3 44 3 1 4 48 67 -9.674 -0.007 -7.992 -3.947 -5.438 1.954 -4.682 D 43 41 3 44 3 0 0 46 65 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 43 - U - - MR 45 44 3 47 5 1 4 47 66 -8.355 -0.016 -8.170 -8.382 -9.274 -1.884 -2.139 -0.470 1.475 D 46 44 3 47 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 42 G C - - MP 48 47 3 52 6 2 5 46 65 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.947 -3.420 -4.897 1.113 -6.095 -5.316 -1.181 -5.423 -4.876 3.434 -5.207 0.779 -1.428 -4.748 -3.196 -3.789 ML 49 47 3 52 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 41 a u - - MP 54 53 6 58 6 2 4 44 63 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.140 -3.289 -4.116 2.452 -4.127 -4.915 1.827 -4.306 -4.231 2.180 -4.661 -0.961 -0.015 -4.199 -1.654 -3.015 ML 55 53 6 58 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 40 a u - - MP 60 59 6 64 6 2 4 42 61 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.443 -3.645 -4.534 2.896 -4.610 -5.755 1.828 -4.586 -4.414 0.232 -4.963 1.330 -0.661 -4.942 -2.261 -3.364 ML 61 59 6 64 6 1 1 41 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 39 C G - - MP 66 65 6 70 4 2 2 40 58 -8.394 -3.073 -0.200 -7.015 -7.457 -7.604 -6.566 -3.829 -4.931 -6.600 3.938 -6.143 -6.935 -3.797 -6.634 -5.792 -1.938 -7.358 -2.946 -5.738 ML 67 65 6 70 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 39 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 38 57 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 41 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 39 58 -2.192 -0.420 -4.893 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - a - - - ML 72 71 6 74 3 1 1 37 56 -9.343 -0.008 -7.997 0.430 0.205 -0.727 -0.159 D 73 71 6 74 3 0 0 36 55 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - A - - - ML 75 74 3 77 3 1 1 36 55 -9.674 -0.007 -7.992 1.505 -3.227 -0.121 -2.891 D 76 74 3 77 3 0 0 35 54 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 37 - A - - MR 78 77 3 80 3 1 1 35 54 -9.674 -0.007 -7.992 1.271 -3.180 0.413 -2.778 D 79 77 3 80 3 0 0 34 52 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 36 - a - - MR 81 80 3 83 5 1 1 34 53 -8.355 -0.016 -8.170 -8.382 -9.274 0.210 -0.185 -0.306 0.208 D 82 80 3 83 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 35 C G - - MP 84 83 3 88 6 2 2 33 52 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.745 -4.558 -4.629 -0.609 -3.501 -5.256 3.040 -4.205 -4.594 1.695 -5.008 -2.334 0.404 -4.874 0.903 -3.390 ML 85 83 3 88 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 34 C G - - MP 90 89 6 94 6 2 2 31 50 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.611 -4.367 -4.533 -0.373 -3.441 -5.221 3.015 -4.119 -4.476 1.687 -4.918 -2.082 1.410 -4.754 -0.997 -3.254 ML 91 89 6 94 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 33 C G - - MP 96 95 6 100 4 2 2 29 48 -8.394 -8.601 -0.019 -7.015 -4.681 -4.560 -4.578 -0.680 0.460 -5.199 3.076 -4.189 -4.555 1.689 -4.969 -2.413 0.353 -4.826 -1.108 -3.383 ML 97 95 6 100 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - G - - - ML 102 101 6 104 3 1 1 27 45 -9.343 -0.008 -7.997 -3.947 -5.438 1.954 -4.682 D 103 101 6 104 3 0 0 26 45 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - - - ML 105 104 3 107 3 1 1 26 44 -9.343 -0.008 -7.997 1.955 -4.897 -4.349 -4.612 D 106 104 3 107 3 0 0 25 44 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - A - - - ML 108 107 3 110 3 1 1 24 43 -9.674 -0.007 -7.992 1.955 -4.897 -4.349 -4.612 D 109 107 3 110 3 0 0 23 42 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 32 - A - - MR 111 110 3 113 5 1 1 23 42 -8.355 -0.016 -8.170 -8.382 -9.274 1.955 -4.897 -4.349 -4.612 D 112 110 3 113 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 31 G C - - MP 114 113 3 118 6 2 2 22 41 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -5.239 -3.814 -5.120 -0.348 -5.092 -5.277 1.547 -5.303 -5.039 3.449 -5.315 -1.504 -1.029 -4.926 -2.522 -4.020 ML 115 113 3 118 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 30 G C - - MP 120 119 6 124 6 2 2 20 39 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -5.239 -3.814 -5.120 -0.348 -5.092 -5.277 1.547 -5.303 -5.039 3.449 -5.315 -1.504 -1.029 -4.926 -2.522 -4.020 ML 121 119 6 124 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 29 C G - - MP 126 125 6 130 4 2 2 18 37 -8.394 -8.601 -0.181 -3.153 -5.683 -5.703 -5.261 -1.757 -3.777 -5.594 3.315 -4.621 -5.289 -1.613 -5.537 -3.647 2.217 -5.665 -1.428 -4.075 ML 127 125 6 130 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - U - - - ML 132 131 6 134 3 1 1 15 34 -9.188 -0.009 -7.842 -0.866 -2.158 -2.799 1.625 D 133 131 6 134 3 0 0 15 33 -7.960 -0.322 -2.352 IL 134 134 3 134 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 135 134 3 137 3 1 1 14 32 -9.343 -0.008 -7.997 1.094 -1.685 -0.756 -0.055 D 136 134 3 137 3 0 0 14 33 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - A - - - ML 138 137 3 140 3 1 1 12 31 -9.343 -0.182 -3.096 1.955 -4.897 -4.349 -4.612 D 139 137 3 140 3 0 0 13 32 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - u - - - ML 141 140 3 143 2 1 1 1 1 * 0.000 0.040 -0.058 -0.326 0.279 D 142 140 3 143 2 0 0 0 0 * 0.000 IL 143 143 3 143 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 144 143 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME flpD ACC RF01737 DESC flpD RNA LENG 47 MAXL 116 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:38:45 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 8 EFFN 7.402344 CKSUM 3678451622 STATS LOCAL MSV -7.3649 0.72917 STATS LOCAL VITERBI -8.3059 0.72917 STATS LOCAL FORWARD -3.0461 0.72917 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28332 1.49466 1.15919 1.68837 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 0.00000 * 1 1.97154 1.01614 2.49676 0.87607 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 2 4.84085 0.04776 4.75308 3.50289 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 3 0.42998 3.87292 1.19741 3.62300 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 4 3.66368 2.46270 0.63091 1.02988 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 5 0.31955 3.54167 1.57069 3.30614 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 6 4.01188 3.77787 4.56139 0.05279 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 7 4.04023 5.06284 0.03509 4.55070 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 8 0.03456 4.68310 4.30697 4.48753 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 9 2.23207 0.89870 2.08390 1.01846 9 c - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 10 1.91285 3.37225 0.25148 3.20940 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 11 1.05751 1.47107 1.13074 2.30052 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 12 0.77346 1.47951 1.42571 2.65219 12 a - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 13 4.76657 0.04931 4.70694 3.48780 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 14 1.09128 1.25336 1.88405 1.48415 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 15 0.35026 3.52839 1.47590 3.28151 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 16 2.91107 0.66529 1.51920 1.54848 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 17 2.78330 0.67972 1.51059 1.55767 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 18 2.92531 0.50836 1.52652 2.05899 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 19 4.04023 5.06284 0.03509 4.55070 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 20 0.03456 4.68310 4.30697 4.48753 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 21 0.03456 4.68310 4.30697 4.48753 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 22 2.76003 1.68086 0.36001 2.94069 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 23 2.75747 1.68085 0.36044 2.93815 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 24 3.62047 0.47545 3.42142 1.14270 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.12563 4.62497 2.22328 1.46634 0.26236 1.09861 0.40547 25 1.97171 2.81537 3.24953 0.27167 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02199 4.52133 4.52133 1.46634 0.26236 0.16647 1.87502 26 0.63901 2.51053 1.90206 1.42005 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 27 0.03456 4.68310 4.30697 4.48753 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.13801 4.62497 2.12775 1.46634 0.26236 1.09861 0.40547 28 1.35416 1.43092 1.61439 1.19160 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02226 4.50922 4.50922 1.46634 0.26236 0.15240 1.95648 29 1.21371 3.58541 0.44471 3.37646 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 30 3.20096 0.38721 1.62799 2.47693 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 31 3.20783 0.38650 1.62810 2.47908 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 32 0.03456 4.68310 4.30697 4.48753 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 33 1.73988 1.57863 0.59727 2.68990 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 34 1.71223 1.57380 0.62854 2.53942 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 35 2.29470 1.57346 0.47379 2.67017 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 36 1.23988 1.51702 1.60070 1.23973 36 u - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 37 0.51359 3.48868 1.10800 3.19676 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.13801 2.12775 4.62497 0.15720 1.92780 1.09861 0.40547 38 3.76033 4.86249 0.04203 4.59014 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 39 2.87914 2.38426 1.42361 0.49296 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 40 2.54396 1.21807 1.39414 0.97393 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 41 3.46663 0.38728 3.18673 1.39202 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 42 2.60732 2.79716 1.71693 0.37736 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 43 4.04023 5.06284 0.03509 4.55070 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 44 0.17080 3.77311 2.30164 3.38340 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 45 3.83525 1.29572 3.65835 0.38724 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 46 3.78739 4.91308 0.04043 4.64404 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 47 0.95451 2.67730 0.94281 1.85331 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.00995 4.61512 * 1.46634 0.26236 0.00000 * //