INFERNAL1/a [1.1.5 | Sep 2023] NAME flpD ACC RF01737 DESC flpD RNA STATES 145 NODES 35 CLEN 47 W 61 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 22:06:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01737/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 8.000000 CKSUM 3678451622 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 45.20 NC 34.60 EFP7GF -8.4783 0.72924 ECMLC 0.73422 -3.93473 4.02547 1600000 414396 0.002896 ECMGC 0.41565 -20.97583 -5.53929 1600000 244650 0.001635 ECMLI 0.71175 -3.27025 4.79351 1600000 373037 0.003217 ECMGI 0.44926 -16.88417 -3.41226 1600000 170058 0.002352 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 61 80 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 IL 1 1 2 1 6 1 8 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 9 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 48 u a - - MP 3 2 3 7 6 2 13 61 80 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.490 -4.334 -4.442 0.939 -3.372 -5.152 2.513 -4.047 -4.378 -0.166 -4.837 -2.100 2.626 -4.668 -0.949 -3.186 ML 4 2 3 7 6 1 6 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 6 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 2 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 8 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 8 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 47 C G - - MP 9 8 6 13 6 2 12 59 78 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -7.457 -7.604 -6.566 -3.829 -4.931 -6.600 3.938 -6.143 -6.935 -3.797 -6.634 -5.792 -1.938 -7.358 -2.946 -5.738 ML 10 8 6 13 6 1 6 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 5 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 2 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 46 A U - - MP 15 14 6 19 6 2 10 57 76 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -5.046 -3.724 -5.154 3.377 -6.674 -7.052 -2.044 -5.312 -4.886 2.103 -5.473 -1.089 -2.197 -5.896 -3.971 -3.845 ML 16 14 6 19 6 1 5 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 45 G A - - MP 21 20 6 25 4 2 9 55 74 -8.394 -8.601 -0.019 -7.015 -5.870 -5.529 -5.442 -1.804 -4.093 -5.859 0.206 -4.852 3.031 -1.913 -5.688 -3.250 2.451 -6.019 -1.787 -4.292 ML 22 20 6 25 4 1 4 56 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 3 56 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 2 55 74 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 6 58 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 5 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 27 26 6 29 3 1 7 53 72 -9.343 -0.008 -7.997 1.542 -3.240 -0.235 -2.917 D 28 26 6 29 3 0 1 52 71 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 5 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 30 29 3 32 3 1 7 52 71 -9.343 -0.008 -7.997 -3.927 -3.576 -4.722 1.931 D 31 29 3 32 3 0 1 51 70 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 4 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 33 32 3 35 3 1 6 51 70 -9.343 -0.008 -7.997 -3.947 -5.438 1.954 -4.682 D 34 32 3 35 3 0 0 50 69 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 36 35 3 38 3 1 5 50 69 -9.343 -0.008 -7.997 1.955 -4.897 -4.349 -4.612 D 37 35 3 38 3 0 0 49 68 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 3 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 39 38 3 41 3 1 5 49 68 -9.674 -0.007 -7.992 -1.298 0.747 -1.005 0.502 D 40 38 3 41 3 0 0 48 66 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 2 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 44 - G - - MR 42 41 3 44 3 1 4 48 67 -9.674 -0.007 -7.992 -3.947 -5.438 1.954 -4.682 D 43 41 3 44 3 0 0 46 65 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 43 - U - - MR 45 44 3 47 5 1 4 47 66 -8.355 -0.016 -8.170 -8.382 -9.274 -1.870 -2.132 -0.444 1.466 D 46 44 3 47 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 42 G C - - MP 48 47 3 52 6 2 5 46 65 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.975 -3.435 -4.927 1.112 -6.121 -5.316 -1.204 -5.454 -4.892 3.457 -5.219 0.646 -1.452 -4.763 -3.221 -3.821 ML 49 47 3 52 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 41 a u - - MP 54 53 6 58 6 2 4 44 63 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.151 -3.273 -4.122 2.475 -4.177 -4.918 1.763 -4.332 -4.246 2.210 -4.671 -0.940 -0.055 -4.200 -1.695 -3.023 ML 55 53 6 58 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 40 a u - - MP 60 59 6 64 6 2 4 42 60 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.432 -3.643 -4.523 2.875 -4.587 -5.736 1.850 -4.574 -4.405 0.236 -4.954 1.348 -0.640 -4.926 -2.240 -3.355 ML 61 59 6 64 6 1 1 41 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 39 C G - - MP 66 65 6 70 4 2 2 40 58 -8.394 -3.245 -0.178 -7.015 -7.457 -7.604 -6.566 -3.829 -4.931 -6.600 3.938 -6.143 -6.935 -3.797 -6.634 -5.792 -1.938 -7.358 -2.946 -5.738 ML 67 65 6 70 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 39 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 38 57 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 41 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 39 58 -2.124 -0.444 -4.824 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - a - - - ML 72 71 6 74 3 1 1 37 56 -9.343 -0.008 -7.997 0.449 0.222 -0.718 -0.216 D 73 71 6 74 3 0 0 36 55 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - A - - - ML 75 74 3 77 3 1 1 36 55 -9.674 -0.007 -7.992 1.497 -3.225 -0.098 -2.886 D 76 74 3 77 3 0 0 35 54 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 37 - A - - MR 78 77 3 80 3 1 1 35 54 -9.674 -0.007 -7.992 1.257 -3.178 0.437 -2.773 D 79 77 3 80 3 0 0 34 52 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 36 - a - - MR 81 80 3 83 5 1 1 34 53 -8.355 -0.016 -8.170 -8.382 -9.274 0.223 -0.172 -0.291 0.173 D 82 80 3 83 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 35 C G - - MP 84 83 3 88 6 2 2 33 52 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.755 -4.562 -4.637 -0.610 -3.506 -5.262 3.060 -4.210 -4.601 1.717 -5.014 -2.334 0.400 -4.881 0.774 -3.395 ML 85 83 3 88 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 34 C G - - MP 90 89 6 94 6 2 2 31 50 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -4.600 -4.353 -4.524 -0.361 -3.438 -5.215 3.001 -4.114 -4.467 1.707 -4.911 -2.068 1.422 -4.743 -0.993 -3.245 ML 91 89 6 94 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 33 C G - - MP 96 95 6 100 4 2 2 29 48 -8.394 -8.601 -0.019 -7.015 -4.673 -4.551 -4.571 -0.674 0.484 -5.194 3.063 -4.186 -4.549 1.710 -4.964 -2.406 0.354 -4.819 -1.107 -3.379 ML 97 95 6 100 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - G - - - ML 102 101 6 104 3 1 1 27 45 -9.343 -0.008 -7.997 -3.947 -5.438 1.954 -4.682 D 103 101 6 104 3 0 0 26 45 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - - - ML 105 104 3 107 3 1 1 26 44 -9.343 -0.008 -7.997 1.955 -4.897 -4.349 -4.612 D 106 104 3 107 3 0 0 25 44 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - A - - - ML 108 107 3 110 3 1 1 24 43 -9.674 -0.007 -7.992 1.955 -4.897 -4.349 -4.612 D 109 107 3 110 3 0 0 23 42 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 32 - A - - MR 111 110 3 113 5 1 1 23 42 -8.355 -0.016 -8.170 -8.382 -9.274 1.955 -4.897 -4.349 -4.612 D 112 110 3 113 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 31 G C - - MP 114 113 3 118 6 2 2 22 41 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -5.229 -3.815 -5.108 -0.345 -5.066 -5.276 1.575 -5.284 -5.033 3.439 -5.310 -1.505 -1.009 -4.922 -2.500 -4.007 ML 115 113 3 118 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 30 G C - - MP 120 119 6 124 6 2 2 20 39 -9.837 -9.776 -0.013 -8.553 -8.832 -9.227 -5.229 -3.815 -5.108 -0.345 -5.066 -5.276 1.575 -5.284 -5.033 3.439 -5.310 -1.505 -1.009 -4.922 -2.500 -4.007 ML 121 119 6 124 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 29 C G - - MP 126 125 6 130 4 2 2 18 37 -8.394 -8.601 -0.184 -3.128 -5.678 -5.697 -5.259 -1.750 -3.776 -5.593 3.304 -4.619 -5.286 -1.605 -5.535 -3.639 2.239 -5.661 -1.426 -4.072 ML 127 125 6 130 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - U - - - ML 132 131 6 134 3 1 1 15 34 -9.185 -0.009 -7.839 -0.843 -2.148 -2.781 1.619 D 133 131 6 134 3 0 0 15 33 -7.979 -0.317 -2.371 IL 134 134 3 134 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 135 134 3 137 3 1 1 14 32 -9.343 -0.008 -7.997 1.123 -1.715 -0.751 -0.116 D 136 134 3 137 3 0 0 15 33 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - A - - - ML 138 137 3 140 3 1 1 12 31 -9.343 -0.161 -3.265 1.955 -4.897 -4.349 -4.612 D 139 137 3 140 3 0 0 13 32 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - u - - - ML 141 140 3 143 2 1 1 1 1 * 0.000 0.038 -0.056 -0.325 0.279 D 142 140 3 143 2 0 0 0 0 * 0.000 IL 143 143 3 143 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 144 143 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME flpD ACC RF01737 DESC flpD RNA LENG 47 MAXL 116 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 22:06:16 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01737/CM NSEQ 8 EFFN 7.386719 CKSUM 3678451622 STATS LOCAL MSV -7.3532 0.72924 STATS LOCAL VITERBI -8.3027 0.72924 STATS LOCAL FORWARD -3.0396 0.72924 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28291 1.49193 1.15816 1.69407 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 0.00000 * 1 2.04048 1.00332 2.51611 0.86133 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 2 4.83787 0.04791 4.74986 3.49994 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 3 0.43767 3.86007 1.18288 3.61196 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 4 3.66017 2.45883 0.64190 1.01489 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 5 0.32469 3.53679 1.55484 3.29900 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 6 4.00927 3.77551 4.55873 0.05292 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 7 4.03798 5.06030 0.03517 4.54848 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 8 0.03466 4.68044 4.30442 4.48491 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 9 2.23178 0.88328 2.07471 1.03946 9 c - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 10 1.91459 3.38559 0.24981 3.22403 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 11 1.04243 1.51324 1.11105 2.32283 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 12 0.78816 1.46476 1.41664 2.63582 12 a - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 13 4.76372 0.04946 4.70381 3.48488 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 14 1.07829 1.24275 1.87775 1.52189 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 15 0.35601 3.52378 1.46009 3.27456 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 16 2.91077 0.65239 1.50581 1.59491 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 17 2.77402 0.68966 1.49794 1.54997 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 18 2.91844 0.51449 1.51325 2.05585 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 19 4.03798 5.06030 0.03517 4.54848 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 20 0.03466 4.68044 4.30442 4.48491 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 21 0.03466 4.68044 4.30442 4.48491 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 22 2.75547 1.66218 0.36663 2.92570 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 23 2.75292 1.66217 0.36705 2.92322 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 24 3.61376 0.48300 3.41408 1.12944 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.12770 4.62497 2.20656 1.46634 0.26236 1.09861 0.40547 25 1.95520 2.80603 3.23568 0.27617 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02203 4.51931 4.51931 1.46634 0.26236 0.16393 1.88919 26 0.61909 2.52902 1.89791 1.46124 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 27 0.03466 4.68044 4.30442 4.48491 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12375 4.62497 2.23874 1.46634 0.26236 1.09861 0.40547 28 1.35513 1.42995 1.61391 1.19185 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02195 4.52317 4.52317 1.46634 0.26236 0.16886 1.86194 29 1.19971 3.57822 0.45193 3.36976 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 30 3.18622 0.39406 1.60943 2.47269 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 31 3.19298 0.39335 1.60953 2.47483 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 32 0.03466 4.68044 4.30442 4.48491 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 33 1.73123 1.56502 0.60604 2.68319 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 34 1.70390 1.56099 0.63780 2.53018 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 35 2.29557 1.55943 0.47844 2.66948 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 36 1.23107 1.50838 1.59001 1.26292 36 a - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 37 0.52353 3.48425 1.09145 3.19010 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.12375 2.23874 4.62497 0.17477 1.83037 1.09861 0.40547 38 3.75749 4.85940 0.04216 4.58705 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 39 2.86286 2.37859 1.40879 0.50125 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 40 2.56719 1.19785 1.43482 0.95908 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 41 3.48062 0.37214 3.20078 1.43035 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 42 2.59551 2.79053 1.69902 0.38399 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 43 4.03798 5.06030 0.03517 4.54848 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 44 0.17151 3.76846 2.29776 3.38030 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 45 3.82504 1.27993 3.64596 0.39448 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 46 3.78451 4.90989 0.04055 4.64085 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 47 0.93795 2.69662 0.93145 1.91627 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.00995 4.61512 * 1.46634 0.26236 0.00000 * //