INFERNAL1/a [1.1.4 | Dec 2020] NAME Fluoride ACC RF01734 DESC Fluoride riboswitch aptamer (crcB RNA motif) STATES 201 NODES 62 CLEN 64 W 193 ALPH RNA RF no CONS yes MAP yes DATE Thu Oct 10 17:19:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1_nancy/RF01734/RF01734/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 289 EFFN 69.485062 CKSUM 3579025286 NULL 0.000 0.000 0.000 0.000 GA 34.00 TC 34.00 NC 33.90 EFP7GF -22.2408 0.72074 ECMLC 0.73412 -6.98289 1.03800 1600000 432934 0.002772 ECMGC 0.32277 -26.55462 -10.92221 1600000 62137 0.006437 ECMLI 0.75284 -5.58058 1.81197 1600000 313469 0.003828 ECMGI 0.34457 -22.83167 -8.50941 1600000 55630 0.007190 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 193 346 -11.283 -11.490 -0.012 -7.085 IL 1 1 2 1 4 6 30 195 348 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 5 29 195 348 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 9 35 194 347 -12.189 -0.001 -10.843 0.589 -0.699 -0.478 0.217 D 4 2 3 5 3 2 24 189 342 -7.242 -2.755 -0.243 IL 5 5 3 5 3 5 29 194 347 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 9 34 193 346 -12.189 -0.001 -10.843 0.318 -0.554 -0.448 0.422 D 7 5 3 8 3 2 24 188 341 -7.242 -2.755 -0.243 IL 8 8 3 8 3 5 29 193 346 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 9 34 192 345 -12.189 -0.001 -10.843 0.192 -0.456 0.064 0.116 D 10 8 3 11 3 2 23 187 340 -7.242 -2.755 -0.243 IL 11 11 3 11 3 5 28 192 345 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 8 33 191 344 -12.189 -0.001 -10.843 0.353 -0.409 0.135 -0.198 D 13 11 3 14 3 2 23 187 340 -7.242 -2.755 -0.243 IL 14 14 3 14 3 5 28 191 344 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 8 32 190 343 -12.189 -0.001 -10.843 0.078 -0.173 -0.051 0.126 D 16 14 3 17 3 2 23 186 339 -7.242 -2.755 -0.243 IL 17 17 3 17 3 5 28 190 343 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 8 32 189 342 -12.189 -0.001 -10.843 0.491 -0.118 -0.377 -0.147 D 19 17 3 20 3 2 23 185 338 -7.242 -2.755 -0.243 IL 20 20 3 20 3 4 27 189 342 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 7 31 188 341 -12.189 -0.001 -10.843 0.820 -0.576 -0.496 -0.226 D 22 20 3 23 3 1 22 185 338 -7.242 -2.755 -0.243 IL 23 23 3 23 3 4 27 188 341 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 6 30 187 340 -12.189 -0.001 -10.843 0.553 0.261 -1.016 -0.250 D 25 23 3 26 3 1 22 184 337 -7.242 -1.270 -0.789 IL 26 26 3 26 3 4 26 187 340 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 27 26 3 29 3 6 29 186 339 -12.492 -0.006 -8.053 0.514 -0.081 -0.701 0.017 D 28 26 3 29 3 1 21 183 336 -6.028 -1.142 -0.912 IL 29 29 3 29 3 3 26 186 339 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 169 - c - - MR 30 29 3 32 3 7 29 185 338 -12.487 -0.001 -10.805 -0.048 0.266 -0.470 0.149 D 31 29 3 32 3 1 20 181 334 -7.333 -2.511 -0.289 IR 32 32 3 32 3 3 25 185 338 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 168 - a - - MR 33 32 3 35 3 7 28 184 337 -12.487 -0.001 -10.805 0.532 -0.397 -0.738 0.257 D 34 32 3 35 3 1 20 181 333 -7.333 -2.511 -0.289 IR 35 35 3 35 3 3 25 184 337 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 167 - a - - MR 36 35 3 38 3 6 27 183 336 -12.487 -0.001 -10.805 0.414 -0.543 -0.392 0.286 D 37 35 3 38 3 1 20 180 333 -7.333 -2.511 -0.289 IR 38 38 3 38 3 3 24 183 336 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 166 - a - - MR 39 38 3 41 3 6 26 182 335 -12.487 -0.001 -10.805 0.414 -1.049 0.223 0.025 D 40 38 3 41 3 1 19 179 332 -7.333 -1.251 -0.801 IR 41 41 3 41 3 3 24 182 335 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 165 - a - - MR 42 41 3 44 3 6 25 181 334 -12.492 -0.001 -10.809 0.322 -0.187 -0.363 0.130 D 43 41 3 44 3 1 18 178 331 -6.929 -2.106 -0.397 IR 44 44 3 44 3 3 23 181 334 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 164 - u - - MR 45 44 3 47 3 5 24 180 333 -12.492 -0.001 -10.809 -0.234 -0.063 -0.019 0.270 D 46 44 3 47 3 1 18 178 331 -6.929 -0.879 -1.159 IR 47 47 3 47 3 2 22 180 333 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 163 - C - - MR 48 47 3 50 3 5 23 179 332 -12.496 -0.001 -10.814 -2.668 1.673 -4.499 -0.712 D 49 47 3 50 3 0 17 176 329 -6.390 -1.568 -0.620 IR 50 50 3 50 3 2 21 179 332 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 162 - A - - MR 51 50 3 53 3 4 22 178 331 -12.496 -0.001 -10.814 1.494 -4.146 0.038 -3.313 D 52 50 3 53 3 0 16 175 328 -6.390 -1.568 -0.620 IR 53 53 3 53 3 2 20 178 331 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 161 - U - - MR 54 53 3 56 3 4 21 177 330 -12.496 -0.001 -10.814 -8.570 -7.657 -9.666 1.997 D 55 53 3 56 3 0 15 174 327 -6.390 -1.568 -0.620 IR 56 56 3 56 3 2 20 177 330 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 160 - C - - MR 57 56 3 59 3 4 20 176 329 -12.496 -0.001 -10.814 -7.752 1.994 -8.236 -6.751 D 58 56 3 59 3 0 15 173 326 -6.390 -1.568 -0.620 IR 59 59 3 59 3 2 19 176 329 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 159 - C - - MR 60 59 3 62 3 3 19 175 328 -12.496 -0.001 -10.814 -4.983 1.640 -4.144 -0.329 D 61 59 3 62 3 0 14 172 325 -6.390 -1.568 -0.620 IR 62 62 3 62 3 2 18 175 328 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 158 - U - - MR 63 62 3 65 3 3 18 174 327 -12.496 -0.001 -10.814 -2.629 -2.561 0.591 1.113 D 64 62 3 65 3 0 14 171 324 -6.390 -1.568 -0.620 IR 65 65 3 65 3 2 17 174 327 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 157 - C - - MR 66 65 3 68 3 3 17 173 326 -12.496 -0.001 -10.814 -6.513 1.530 -7.528 0.132 D 67 65 3 68 3 0 13 170 323 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 17 173 326 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 156 - A - - MR 69 68 3 71 3 3 16 172 325 -12.496 -0.001 -10.814 1.689 -6.847 -0.402 -6.758 D 70 68 3 71 3 0 12 169 322 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 16 172 325 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 155 - G - - MR 72 71 3 74 3 2 15 171 324 -12.496 -0.001 -10.814 -1.433 -6.575 1.838 -4.527 D 73 71 3 74 3 0 12 168 321 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 15 171 324 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 154 - U - - MR 75 74 3 77 3 2 14 170 323 -12.496 -0.001 -10.814 -6.655 -3.859 -7.431 1.969 D 76 74 3 77 3 0 11 168 321 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 14 170 323 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 153 - A - - MR 78 77 3 80 3 2 13 169 322 -12.496 -0.001 -10.814 1.995 -8.312 -7.571 -7.700 D 79 77 3 80 3 0 11 167 320 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 13 169 322 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 152 - G - - MR 81 80 3 83 3 2 12 168 321 -12.496 -0.001 -10.814 -0.266 -5.758 1.626 -3.973 D 82 80 3 83 3 0 11 166 319 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 12 168 321 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 151 - U - - MR 84 83 3 86 2 1 11 167 320 -12.841 -0.000 -6.392 -3.107 -7.151 1.950 D 85 83 3 86 2 0 10 166 319 -4.432 -0.068 IR 86 86 3 86 2 1 12 167 320 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 29 ] - - - - - - B 87 86 3 88 138 0 10 166 319 [ BEGL 30 ] - - - - - - S 88 87 1 89 4 0 0 27 45 -0.004 -10.252 -9.659 -10.299 [ MATP 31 ] 10 27 G C - - MP 89 88 1 93 6 2 2 27 45 -12.164 -12.103 -0.003 -10.880 -11.160 -11.555 -9.137 -6.482 -9.673 -1.874 -10.351 -3.616 -2.711 -10.117 -7.901 3.897 -8.102 -1.405 -2.499 -7.959 -7.304 -8.659 ML 90 88 1 93 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 1 93 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 1 93 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 11 26 G C - - MP 95 94 6 99 6 2 2 25 43 -12.164 -12.103 -0.003 -10.880 -11.160 -11.555 -10.093 -6.727 -12.379 -4.200 -11.724 -7.891 -6.025 -11.855 -8.095 3.944 -8.288 -1.906 -6.389 -2.107 -8.474 -11.456 ML 96 94 6 99 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 12 25 c g - - MP 101 100 6 105 6 2 2 23 41 -12.164 -12.103 -0.003 -10.880 -11.160 -11.555 -6.108 -2.078 -6.149 1.690 -5.293 -6.979 2.392 -5.880 -6.083 1.491 -6.597 -0.709 1.670 -6.300 -0.907 -4.886 ML 102 100 6 105 6 1 1 23 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 13 24 G C - - MP 107 106 6 111 4 2 2 21 39 -11.283 -1.607 -0.577 -9.904 -6.575 -0.840 -6.421 1.030 -7.556 -6.929 -2.620 -7.083 -6.737 3.601 -6.997 -2.795 -0.751 -6.249 -1.928 -5.376 ML 108 106 6 111 4 1 1 22 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 110 106 6 111 4 0 0 21 38 -4.568 -4.250 -2.265 -0.520 IL 111 111 5 111 4 1 1 23 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 112 112 6 112 3 1 1 19 38 -5.374 -0.041 -8.074 0.000 0.000 0.000 0.000 [ MATL 35 ] 14 - A - - - ML 113 112 6 115 3 1 1 18 36 -12.198 -0.001 -10.852 1.967 -7.677 -3.641 -7.295 D 114 112 6 115 3 0 0 20 38 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 15 - U - - - ML 116 115 3 118 3 1 1 17 35 -12.198 -0.001 -10.852 -5.688 -5.494 -4.281 1.966 D 117 115 3 118 3 0 0 19 37 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 16 - G - - - ML 119 118 3 121 3 1 1 16 34 -12.198 -0.001 -10.852 -4.548 -4.966 1.970 -7.192 D 120 118 3 121 3 0 0 18 36 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 17 - G - - - ML 122 121 3 124 3 1 1 15 33 -12.198 -0.001 -10.852 -0.294 -7.039 1.663 -6.537 D 123 121 3 124 3 0 0 16 35 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 18 - a - - - ML 125 124 3 127 3 1 1 14 31 -7.456 -0.009 -10.852 0.544 0.129 -0.292 -0.664 D 126 124 3 127 3 0 0 14 33 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 17 33 -1.752 -0.605 -4.452 0.000 0.000 0.000 0.000 [ MATL 40 ] 20 - G - - - ML 128 127 3 130 3 1 1 12 30 -12.198 -0.005 -8.269 -0.033 -5.336 1.508 -2.702 D 129 127 3 130 3 0 0 14 33 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 21 - U - - - ML 131 130 3 133 3 1 1 10 29 -12.194 -0.001 -10.848 -4.090 -0.510 -4.427 1.675 D 132 130 3 133 3 0 0 13 31 -6.730 -0.914 -1.121 IL 133 133 3 133 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 22 - U - - - ML 134 133 3 136 2 1 1 1 1 * 0.000 -2.355 -0.254 -1.409 1.373 D 135 133 3 136 2 0 0 0 0 * 0.000 IL 136 136 3 136 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 137 136 3 -1 0 0 0 0 0 [ BEGR 44 ] - - - - - - S 138 87 1 139 3 0 1 149 302 -12.198 -0.015 -6.583 IL 139 139 2 139 3 1 2 150 303 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 28 - u - - - ML 140 139 2 142 3 1 1 150 302 -1.151 -1.741 -1.996 0.020 -0.537 -0.219 0.524 D 141 139 2 142 3 0 0 111 264 -7.618 -3.131 -0.183 IL 142 142 3 142 3 1 4 155 308 -0.174 -3.144 -11.610 0.000 0.000 0.000 0.000 [ MATL 46 ] 75 - u - - - ML 143 142 3 145 3 1 2 63 113 -11.768 -0.001 -10.422 0.096 0.023 -1.321 0.599 D 144 142 3 145 3 0 0 62 112 -11.692 -0.095 -3.975 IL 145 145 3 145 3 1 1 64 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 76 - u - - - ML 146 145 3 148 3 1 2 62 112 -12.179 -0.001 -10.833 0.063 -0.620 -0.362 0.610 D 147 145 3 148 3 0 0 61 110 -7.869 -0.345 -2.261 IL 148 148 3 148 3 1 1 63 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 77 - A - - - ML 149 148 3 151 3 1 1 61 111 -12.198 -0.020 -6.181 1.981 -4.702 -7.174 -7.144 D 150 148 3 151 3 0 0 60 109 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 62 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 78 - A - - - ML 152 151 3 154 3 1 1 60 110 -5.872 -0.042 -6.411 1.964 -4.460 -6.458 -4.606 D 153 151 3 154 3 0 0 59 108 -7.898 -0.338 -2.290 IL 154 154 3 154 3 1 1 61 110 -1.883 -0.518 -5.040 0.000 0.000 0.000 0.000 [ MATL 50 ] 81 - C - - - ML 155 154 3 157 3 1 1 59 109 -12.182 -0.001 -10.836 -1.207 1.711 -2.988 -2.576 D 156 154 3 157 3 0 0 57 107 -7.722 -1.911 -0.455 IL 157 157 3 157 3 1 1 60 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 82 - C - - - ML 158 157 3 160 5 1 1 58 108 -11.130 -0.027 -10.945 -11.157 -5.849 -5.071 1.682 -3.637 -0.553 D 159 157 3 160 5 0 0 57 106 -5.823 -0.386 -5.084 -3.459 -3.372 IL 160 160 3 160 5 1 1 59 108 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 83 150 G C - - MP 161 160 3 165 6 2 2 57 107 -12.141 -12.080 -0.010 -10.857 -11.137 -7.575 -8.151 -3.085 -8.245 -1.192 -9.240 -7.540 -1.620 -8.834 -0.736 3.823 -7.793 -2.863 -4.457 -2.790 -6.266 -7.206 ML 162 160 3 165 6 1 1 56 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 3 165 6 1 1 56 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 3 165 6 0 0 49 98 -10.744 -9.443 -5.240 -5.922 -5.939 -0.091 IL 165 165 5 165 6 1 1 57 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 57 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 84 149 C G - - MP 167 166 6 171 6 2 2 55 105 -12.134 -12.073 -0.145 -10.850 -6.912 -3.529 -8.234 -8.179 -7.875 -0.403 -2.226 -8.269 3.768 -7.240 -7.871 -3.969 -2.576 -6.003 -0.689 -8.243 -1.570 -2.548 ML 168 166 6 171 6 1 1 54 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 54 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 47 96 -11.019 -9.718 -5.515 -6.197 -6.214 -0.075 IL 171 171 5 171 6 1 1 55 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 55 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 85 148 C G - - MP 173 172 6 177 6 2 2 54 103 -11.991 -11.931 -0.643 -6.312 -10.987 -1.530 -6.322 -3.041 -6.325 -0.186 -2.042 -7.168 3.174 -3.850 -6.187 -0.512 -6.701 -3.611 2.127 -6.508 -1.274 -4.913 ML 174 172 6 177 6 1 1 53 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 53 102 -7.786 -6.515 -0.710 -6.494 -1.627 -4.707 -0.434 -0.655 -1.082 1.106 D 176 172 6 177 6 0 0 45 94 -13.033 -11.731 -7.528 -8.210 -4.499 -0.079 IL 177 177 5 177 6 1 1 54 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 54 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 86 147 c g - - MP 179 178 6 183 4 2 2 53 102 -0.807 -3.505 -1.563 -9.025 -3.813 -3.915 -3.978 1.094 -3.742 -3.445 2.226 -4.172 -4.016 1.668 -4.575 -0.831 1.966 -2.640 -0.557 -2.542 ML 180 178 6 183 4 1 1 51 101 -0.981 -4.849 -1.415 -3.578 0.441 -0.220 -0.286 -0.053 MR 181 178 6 183 4 1 1 51 100 -1.471 -4.432 -2.299 -1.360 -0.202 -0.506 -0.823 0.896 D 182 178 6 183 4 0 0 43 93 -10.340 -2.630 -0.293 -5.546 IL 183 183 5 183 4 1 1 52 102 -0.729 -1.370 -6.742 -11.073 0.000 0.000 0.000 0.000 IR 184 184 6 184 3 1 1 48 97 -0.539 -1.713 -7.222 0.000 0.000 0.000 0.000 [ MATL 56 ] 104 - g - - - ML 185 184 6 187 3 1 1 14 33 -12.180 -0.012 -6.912 0.126 -0.291 0.128 -0.002 D 186 184 6 187 3 0 0 15 34 -7.830 -3.343 -0.157 IL 187 187 3 187 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 105 - u - - - ML 188 187 3 190 3 1 1 13 32 -12.169 -0.028 -5.717 0.045 -0.026 -0.749 0.476 D 189 187 3 190 3 0 0 14 32 -8.339 -3.852 -0.108 IL 190 190 3 190 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 106 - a - - - ML 191 190 3 193 3 1 1 12 30 -12.142 -0.062 -4.575 0.526 -0.728 -0.894 0.504 D 192 190 3 193 3 0 0 12 31 -9.106 -4.619 -0.063 IL 193 193 3 193 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 107 - a - - - ML 194 193 3 196 3 1 1 10 29 -12.081 -0.732 -1.331 0.529 -0.335 -0.588 0.136 D 195 193 3 196 3 0 0 11 29 -10.038 -5.551 -0.033 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 108 - u - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 0.353 -0.556 -0.448 0.389 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Fluoride ACC RF01734 DESC Fluoride riboswitch aptamer (crcB RNA motif) LENG 64 MAXL 198 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Oct 10 17:19:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1_nancy/RF01734/RF01734/CM NSEQ 289 EFFN 199.600327 CKSUM 3579025286 STATS LOCAL MSV -8.1402 0.72074 STATS LOCAL VITERBI -8.9523 0.72074 STATS LOCAL FORWARD -4.1286 0.72074 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40638 1.34797 1.36720 1.42550 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 0.00000 * 1 0.96356 1.89049 1.72124 1.24263 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 2 1.16505 1.78120 1.69844 1.08859 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 3 1.25957 1.70624 1.31970 1.31878 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 4 1.13865 1.66986 1.26812 1.56010 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 5 1.34549 1.49513 1.40302 1.31113 5 u - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 6 1.03578 1.45423 1.64522 1.52098 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 7 0.79472 1.79581 1.73434 1.58093 7 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 8 0.98962 1.17927 2.12919 1.60025 8 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 9 1.01879 1.42739 1.88930 1.39490 9 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97344 7.97344 1.46634 0.26236 1.09861 0.40547 10 4.21636 4.26368 0.04055 4.51730 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 11 6.42324 7.52529 0.01815 4.14650 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 12 1.49495 1.10163 1.53630 1.47738 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 13 1.83786 6.18464 0.23645 3.00874 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 14 0.02189 7.88514 3.87546 7.54203 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 15 6.80200 6.61290 4.50251 0.01363 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 16 4.67348 4.84726 0.01790 7.49834 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 17 1.57308 7.70488 0.23386 7.30366 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 18 0.99667 1.27315 1.58130 1.92938 18 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00629 5.12745 7.97660 0.11202 2.24459 1.09861 0.40547 19 1.39708 6.21598 0.33416 3.35962 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00344 7.97660 5.77808 1.46634 0.26236 1.09861 0.40547 20 4.59906 1.71570 4.70450 0.22184 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00069 7.97384 7.97384 1.46634 0.26236 0.20044 1.70581 21 3.19133 1.55587 2.36263 0.42510 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.40576 1.09905 7.97660 0.00206 6.18605 1.09861 0.40547 22 3.39544 0.19306 4.02791 2.08561 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 23 1.61774 1.64779 1.01660 1.39693 25 g - - > 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 24 7.53785 0.01878 7.42365 4.04671 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 25 4.51760 0.05919 4.70866 3.28234 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.01083 7.97660 4.56366 1.46634 0.26236 1.09861 0.40547 26 1.39009 1.76849 1.52760 1.01253 28 u - - - 1.38629 1.38629 1.38629 1.38629 1.25284 0.77878 1.36516 2.20234 0.11715 3.47675 0.03140 27 1.33213 1.35048 2.39201 0.95315 75 u - - - 1.38629 1.38629 1.38629 1.38629 0.00093 7.67210 7.67210 1.46634 0.26236 0.05378 2.94955 28 1.35720 1.83165 1.63401 0.94849 76 u - - - 1.38629 1.38629 1.38629 1.38629 0.00070 7.96340 7.96340 1.46634 0.26236 0.04978 3.02490 29 0.01117 4.60825 7.47347 7.47299 77 A - - - 1.38629 1.38629 1.38629 1.38629 0.01428 7.97660 4.28048 1.46634 0.26236 1.09861 0.40547 30 0.02036 4.56927 6.93630 4.73093 78 A - - - 1.38629 1.38629 1.38629 1.38629 0.02973 4.04403 4.44235 0.20396 1.69009 0.04845 3.05141 31 2.20479 0.19185 3.48511 3.39199 81 C - - - 1.38629 1.38629 1.38629 1.38629 0.00069 7.96527 7.96527 1.46634 0.26236 1.38549 0.28795 32 6.12606 0.21333 3.98783 1.76384 82 C - - - 1.38629 1.38629 1.38629 1.38629 0.01844 7.96803 4.02162 1.46634 0.26236 0.07453 2.63361 33 3.51508 3.96499 0.06068 4.58881 83 G - - < 1.38629 1.38629 1.38629 1.38629 0.00611 7.95901 5.16022 1.46634 0.26236 3.98433 0.01878 34 3.07815 0.12754 4.45743 2.77892 84 C - - < 1.38629 1.38629 1.38629 1.38629 0.10998 7.95361 2.26531 1.46634 0.26236 4.23662 0.01456 35 2.87182 0.49813 3.31269 1.20625 85 C - - < 1.38629 1.38629 1.38629 1.38629 0.48574 7.84441 0.95616 1.46634 0.26236 2.20097 0.11732 36 1.97891 1.16041 1.41582 1.18517 86 c - - < 1.38629 1.38629 1.38629 1.38629 0.87947 0.53721 7.38461 0.94529 0.49195 0.01037 4.57357 37 1.30895 1.58265 1.27262 1.40906 104 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01738 7.97265 4.08139 1.46634 0.26236 2.67130 0.07167 38 1.36978 1.38879 1.92512 1.04811 105 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01971 7.95598 3.95462 1.46634 0.26236 4.13407 0.01615 39 1.00933 1.91427 2.03999 1.02706 106 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04387 7.93698 3.15667 1.46634 0.26236 4.75448 0.00865 40 1.00637 1.61600 1.80445 1.30490 107 a - - _ 1.38629 1.38629 1.38629 1.38629 0.34783 7.89385 1.22618 1.46634 0.26236 0.61334 0.77988 41 1.13642 1.79069 1.69990 1.11022 108 u - - _ 1.38629 1.38629 1.38629 1.38629 1.29815 0.78888 1.29970 1.36803 0.29385 0.92721 0.50361 42 1.35120 1.49784 1.07173 1.74273 147 g - - > 1.38629 1.38629 1.38629 1.38629 0.06282 7.50867 2.80770 1.46634 0.26236 0.23547 1.56160 43 1.23413 3.15954 0.50299 2.78473 148 G - - > 1.38629 1.38629 1.38629 1.38629 0.00078 7.85400 7.85400 1.46634 0.26236 0.22453 1.60391 44 3.07710 7.01472 0.10945 2.87029 149 G - - > 1.38629 1.38629 1.38629 1.38629 0.00070 7.95361 7.95361 1.46634 0.26236 1.43783 0.27108 45 3.19610 0.09254 3.95663 3.56359 150 C - - > 1.38629 1.38629 1.38629 1.38629 0.00070 7.95901 7.95901 1.46634 0.26236 0.03792 3.29118 46 7.34670 3.61187 7.91058 0.02841 151 U - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 47 1.55998 6.58088 0.25324 4.40714 152 G - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 48 0.00127 8.12002 7.59016 7.66585 153 A - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 49 7.53775 4.18570 8.12254 0.01617 154 U - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 50 2.36516 7.23560 0.10901 4.75346 155 G - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 51 0.20933 7.29400 1.67413 7.23223 156 A - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 52 7.72082 0.32350 8.40227 1.28837 157 C - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 53 3.46699 3.30310 0.94877 0.60733 158 U - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 54 6.05628 0.24205 4.42100 1.60634 159 C - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 55 8.06626 0.00125 8.47544 7.22493 160 C - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 56 8.81363 7.95995 9.77543 0.00055 161 U - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 57 0.34774 4.50692 1.34518 3.80798 162 A - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97660 7.97660 1.46634 0.26236 1.09861 0.40547 58 3.35973 0.21261 4.79659 1.90700 163 C - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97344 7.97344 1.46634 0.26236 1.09861 0.40547 59 1.58510 1.41490 1.37943 1.20264 164 u - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97344 7.97344 1.46634 0.26236 1.09861 0.40547 60 1.16187 1.50585 1.63458 1.30846 165 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 61 1.09316 2.16091 1.20454 1.38713 166 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 62 1.09289 1.77203 1.65693 1.19059 167 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 63 1.00544 1.66211 1.91857 1.21214 168 a - - : 1.38629 1.38629 1.38629 1.38629 0.00069 7.97015 7.97015 1.46634 0.26236 1.09861 0.40547 64 1.43981 1.17576 1.71296 1.29422 169 c - - : 1.38629 1.38629 1.38629 1.38629 0.00035 7.96981 * 1.46634 0.26236 0.00000 * //