INFERNAL1/a [1.1.4 | Dec 2020] NAME Pyrobac-1 ACC RF01722 DESC Pyrobac-1 RNA STATES 184 NODES 48 CLEN 60 W 80 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:37:54 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 4.792969 CKSUM 1155749080 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 41.20 NC 35.60 EFP7GF -12.1595 0.72011 ECMLC 0.52777 -8.54776 2.48735 1600000 405975 0.002956 ECMGC 0.39005 -18.83017 -3.68060 1600000 147343 0.002715 ECMLI 0.55287 -5.97328 3.61406 1600000 240541 0.004989 ECMGI 0.41562 -14.51950 -1.09941 1600000 105776 0.003782 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 103 -7.807 -8.014 -0.029 -6.428 IL 1 1 2 1 4 1 15 83 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 82 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 14 80 103 -8.776 -0.012 -7.430 1.637 -2.232 -2.257 -1.096 D 4 2 3 5 3 0 10 78 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 81 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 1 13 79 102 -8.776 -0.012 -7.430 -0.169 0.715 -0.326 -0.575 D 7 5 3 8 3 0 10 77 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 12 78 101 -8.776 -0.293 -2.461 0.477 -0.592 -0.731 0.424 D 10 8 3 11 3 0 9 76 99 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 13 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 12 77 100 -8.497 -0.014 -7.151 -0.194 -1.403 0.915 -0.214 D 13 11 3 14 3 0 8 76 99 -8.120 -0.284 -2.512 IL 14 14 3 14 3 1 11 78 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 11 76 99 -8.776 -0.012 -7.430 -2.132 1.548 -3.043 -0.463 D 16 14 3 17 3 0 4 74 97 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 10 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 10 75 98 -8.776 -0.012 -7.430 -0.902 1.542 -2.749 -1.311 D 19 17 3 20 3 0 3 73 96 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 9 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 9 74 97 -8.776 -0.012 -7.430 -1.667 -2.593 1.594 -1.001 D 22 20 3 23 3 0 2 72 95 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 8 75 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - g - - - ML 24 23 3 26 3 1 8 73 96 -8.776 -0.012 -7.430 -0.129 -0.048 0.606 -0.744 D 25 23 3 26 3 0 2 71 94 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 7 74 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 7 72 95 -8.776 -0.012 -7.430 -3.131 -4.531 1.916 -3.873 D 28 26 3 29 3 0 1 70 93 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 6 73 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 6 71 94 -9.125 -0.011 -7.443 1.913 -3.957 -3.453 -3.652 D 31 29 3 32 3 0 1 70 92 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 4 72 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 65 - U - - MR 33 32 3 35 3 1 6 70 93 -9.125 -0.011 -7.443 -0.816 -1.737 -2.335 1.553 D 34 32 3 35 3 0 0 68 91 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 4 71 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 64 - g - - MR 36 35 3 38 3 1 5 69 92 -9.125 -0.011 -7.443 -0.700 0.058 0.574 -0.227 D 37 35 3 38 3 0 0 67 90 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 3 70 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 63 - u - - MR 39 38 3 41 3 1 4 68 91 -9.125 -0.011 -7.443 -1.483 0.612 -2.333 0.937 D 40 38 3 41 3 0 0 66 89 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 2 69 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 62 - G - - MR 42 41 3 44 3 1 4 67 90 -9.125 -0.011 -7.443 -1.781 -2.739 1.644 -1.202 D 43 41 3 44 3 0 0 65 88 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 2 68 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 61 - g - - MR 45 44 3 47 3 1 3 66 89 -9.125 -0.011 -7.443 -0.651 -0.671 0.530 0.369 D 46 44 3 47 3 0 0 64 87 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 67 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 60 - g - - MR 48 47 3 50 3 1 3 65 88 -9.125 -0.011 -7.443 -0.975 0.508 0.633 -0.948 D 49 47 3 50 3 0 0 63 86 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 66 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 59 - a - - MR 51 50 3 53 5 1 3 64 87 -7.824 -0.023 -7.639 -7.851 -8.743 0.901 -2.291 0.708 -1.762 D 52 50 3 53 5 0 0 62 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 1 64 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 58 C G - - MP 54 53 3 58 6 2 3 63 86 -2.357 -9.437 -0.331 -8.213 -8.493 -8.888 -5.144 -5.203 -4.721 -1.335 -3.257 -5.043 3.489 -4.103 -4.764 -1.202 -5.004 -3.234 0.238 -5.127 1.132 -3.571 ML 55 53 3 58 6 1 1 59 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 1 58 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 56 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 63 86 -1.170 -5.424 -0.957 -7.079 -7.855 -7.516 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 58 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 57 c g - - MP 60 59 6 64 6 2 3 56 75 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -3.587 -3.037 -3.700 1.278 -3.309 -4.528 2.495 -3.650 -3.602 0.810 -4.078 1.700 0.624 -3.900 -0.973 -2.563 ML 61 59 6 64 6 1 1 55 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 55 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 56 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 56 G C - - MP 66 65 6 70 6 2 3 54 73 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -6.266 -3.851 -6.705 -0.899 -7.312 -5.256 -2.303 -6.921 -5.200 3.859 -5.459 -1.643 -2.664 -5.425 -4.456 -5.562 ML 67 65 6 70 6 1 1 53 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 53 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 54 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 55 g c - - MP 72 71 6 76 6 2 3 52 71 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -4.227 -3.511 -4.132 0.191 -3.535 -4.745 2.492 -4.029 -4.177 2.666 -4.564 -1.222 0.410 -4.245 -1.098 -2.982 ML 73 71 6 76 6 1 1 51 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 51 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 52 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 54 C G - - MP 78 77 6 82 6 2 2 50 69 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -6.343 -6.401 -5.699 -2.575 -4.140 -5.874 3.866 -5.146 -5.877 -2.496 -5.872 -4.452 -0.886 -6.289 -1.961 -4.681 ML 79 77 6 82 6 1 1 49 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 49 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 50 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 53 g c - - MP 84 83 6 88 6 2 2 48 67 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -3.549 -3.132 -3.560 0.495 -3.119 -4.292 1.240 -3.586 -3.635 2.429 -4.091 -1.000 1.742 -3.664 1.050 -2.500 ML 85 83 6 88 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 47 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 45 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 48 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 52 G C - - MP 90 89 6 94 6 2 2 46 65 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -5.020 -3.337 -5.057 1.068 -6.071 -5.101 -1.201 -5.493 -4.724 3.597 -5.051 -0.985 -1.476 -4.744 -3.239 -3.934 ML 91 89 6 94 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 46 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 51 g c - - MP 96 95 6 100 6 2 2 44 63 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -3.106 -2.802 -3.186 1.204 -2.902 -3.986 1.710 -3.309 -3.252 1.934 -3.754 0.183 1.869 -3.281 -0.629 -2.179 ML 97 95 6 100 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 44 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 50 u a - - MP 102 101 6 106 4 2 2 42 61 -7.807 -8.014 -0.029 -6.428 -1.815 -2.004 -2.007 1.304 -1.948 -0.774 1.540 -2.324 -0.663 0.814 -2.636 -0.631 1.650 -2.148 0.862 -1.251 ML 103 101 6 106 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 43 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 42 61 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 45 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 44 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - G - - - ML 108 107 6 110 3 1 1 40 58 -8.776 -0.012 -7.430 -0.006 -2.562 1.374 -2.039 D 109 107 6 110 3 0 0 39 57 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 43 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - A - - - ML 111 110 3 113 3 1 1 38 57 -8.776 -0.012 -7.430 1.913 -3.957 -3.453 -3.652 D 112 110 3 113 3 0 0 38 56 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 42 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - G - - - ML 114 113 3 116 3 1 1 37 55 -8.776 -0.012 -7.430 -3.131 -4.531 1.916 -3.873 D 115 113 3 116 3 0 0 37 55 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 41 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - A - - - ML 117 116 3 119 3 1 1 36 54 -9.125 -0.011 -7.443 1.634 -2.635 -0.927 -2.260 D 118 116 3 119 3 0 0 35 53 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 37 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 49 - A - - MR 120 119 3 122 3 1 1 35 53 -9.125 -0.011 -7.443 1.653 -2.670 -1.015 -2.303 D 121 119 3 122 3 0 0 34 51 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 36 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 48 - G - - MR 123 122 3 125 3 1 1 34 52 -9.125 -0.011 -7.443 -3.131 -4.531 1.916 -3.873 D 124 122 3 125 3 0 0 33 50 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 35 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 47 - U - - MR 126 125 3 128 3 1 1 33 51 -9.125 -0.011 -7.443 -3.006 -2.759 -3.786 1.870 D 127 125 3 128 3 0 0 32 49 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 46 - G - - MR 129 128 3 131 3 1 1 32 50 -9.125 -0.011 -7.443 -3.131 -4.531 1.916 -3.873 D 130 128 3 131 3 0 0 31 48 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 45 - U - - MR 132 131 3 134 3 1 1 31 49 -9.125 -0.011 -7.443 -2.010 -0.985 -2.765 1.632 D 133 131 3 134 3 0 0 30 47 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 44 - C - - MR 135 134 3 137 3 1 1 30 48 -9.125 -0.011 -7.443 -3.601 1.893 -4.347 -2.707 D 136 134 3 137 3 0 0 29 46 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 31 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 43 - g - - MR 138 137 3 140 5 1 1 29 47 -7.824 -0.023 -7.639 -7.851 -8.743 0.147 -1.026 0.952 -1.097 D 139 137 3 140 5 0 0 28 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 30 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 26 42 G C - - MP 141 140 3 145 6 2 2 28 46 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -5.760 -3.663 -5.934 -0.598 -6.520 -0.351 -1.658 -6.399 -5.057 3.733 -5.286 -1.481 -2.000 -4.986 -3.738 -4.915 ML 142 140 3 145 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 27 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 28 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 27 41 C G - - MP 147 146 6 151 6 2 2 26 44 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -6.343 -6.401 -5.699 -2.575 -4.140 -5.874 3.866 -5.146 -5.877 -2.496 -5.872 -4.452 -0.886 -6.289 -1.961 -4.681 ML 148 146 6 151 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 25 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 23 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 26 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 28 40 g c - - MP 153 152 6 157 6 2 2 24 42 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -4.224 -3.550 -4.130 0.166 -3.488 -4.752 2.558 -4.001 -4.168 2.601 -4.560 -1.265 0.449 -4.259 -1.057 -2.974 ML 154 152 6 157 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 23 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 24 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 29 39 G C - - MP 159 158 6 163 6 2 2 22 40 -9.497 -9.437 -0.016 -8.213 -8.493 -8.888 -6.266 -3.851 -6.705 -0.899 -7.312 -5.256 -2.303 -6.921 -5.200 3.859 -5.459 -1.643 -2.664 -5.425 -4.456 -5.562 ML 160 158 6 163 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 21 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 19 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 22 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 30 38 C G - - MP 165 164 6 169 4 2 2 20 38 -3.168 -2.339 -0.557 -6.428 -6.343 -6.401 -5.699 -2.575 -4.140 -5.874 3.866 -5.146 -5.877 -2.496 -5.872 -4.452 -0.886 -6.289 -1.961 -4.681 ML 166 164 6 169 4 1 1 19 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 18 36 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 17 35 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 20 38 -2.571 -0.828 -2.002 -5.740 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 19 37 -1.722 -0.567 -5.516 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - u - - - ML 171 170 6 173 3 1 1 16 34 -8.776 -0.012 -7.430 -0.893 -1.455 0.431 0.806 D 172 170 6 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - u - - - ML 174 173 3 176 3 1 1 14 33 -8.776 -0.012 -7.430 -0.203 0.229 -0.788 0.465 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - a - - - ML 177 176 3 179 3 1 1 12 31 -8.776 -0.012 -7.430 0.267 0.022 -0.274 -0.068 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - c - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -0.142 0.168 -0.193 0.132 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Pyrobac-1 ACC RF01722 DESC Pyrobac-1 RNA LENG 60 MAXL 133 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:37:54 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 8 EFFN 7.113281 CKSUM 1155749080 STATS LOCAL MSV -8.1812 0.72011 STATS LOCAL VITERBI -8.6299 0.72011 STATS LOCAL FORWARD -3.8731 0.72011 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.73248 1.26094 0.99172 1.77888 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 0.00000 * 1 0.19939 3.25130 3.30519 2.25046 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 2 1.56960 0.79949 1.59455 1.97105 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 3 1.03150 1.84162 1.93167 1.07863 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.23714 4.62497 1.60287 1.46634 0.26236 1.09861 0.40547 4 1.60111 2.56248 0.65956 1.58896 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.02455 4.41238 4.41238 1.46634 0.26236 0.09294 2.42190 5 3.25971 0.25527 3.90721 1.79099 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 6 2.12185 0.23875 3.74494 2.67451 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 7 2.90183 3.57170 0.22516 2.13215 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 8 1.55146 1.37076 0.87716 2.13548 8 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 9 3.99765 5.01499 0.03667 4.50869 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 10 0.03634 4.63295 4.25874 4.43786 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 11 3.91640 0.27835 3.76361 1.61017 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.51619 0.93292 4.62497 0.71061 0.67598 1.09861 0.40547 12 1.79730 0.91011 1.09491 2.33095 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 13 3.51956 4.52051 0.05317 4.48385 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 14 2.81532 0.92189 0.79422 2.40337 16 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 15 4.68660 0.05280 4.63132 3.42739 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 16 2.49688 2.03753 0.91213 0.95285 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 17 1.98408 3.81072 0.20472 3.66964 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 18 1.81650 1.53408 1.12578 1.21283 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 19 1.61562 1.40318 1.66205 1.00603 21 u - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 20 1.40413 3.51746 0.38072 3.18502 22 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 21 0.03634 4.63295 4.25874 4.43786 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 22 3.99765 5.01499 0.03667 4.50869 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 23 0.20946 3.60478 2.05006 3.40941 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 24 3.43442 2.61176 0.12757 4.26011 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 25 4.73298 0.05174 4.66037 3.43705 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 26 2.84306 0.87335 0.84010 2.38014 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 27 3.53063 4.53913 0.05232 4.50934 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 28 4.70382 0.05240 4.64217 3.43102 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.14057 2.10919 4.62497 0.15443 1.94422 1.09861 0.40547 29 2.29154 2.67676 1.01113 0.76293 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 30 1.58169 1.18136 1.96297 1.05823 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 31 1.20279 1.32782 1.56516 1.48927 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 32 1.54233 1.21863 1.49401 1.32421 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.40578 1.12781 4.62497 0.34362 1.23511 1.09861 0.40547 33 3.70263 4.79604 0.04476 4.52343 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 34 4.61297 0.06443 4.42506 3.20636 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 35 2.63965 0.87521 0.83027 2.57822 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 36 3.71970 4.82759 0.04368 4.55702 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 37 4.44126 0.07377 4.17688 3.12382 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 38 1.31186 2.15769 0.64054 2.42952 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 39 4.38429 0.04526 4.82311 3.74058 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 40 3.16800 2.14974 3.68965 0.20283 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 41 3.99765 5.01499 0.03667 4.50869 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 42 3.96261 3.73342 4.51125 0.05542 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 43 3.99765 5.01499 0.03667 4.50869 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 44 0.19712 3.62586 2.11957 3.43579 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 45 1.27557 1.77136 1.12256 1.49084 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 46 1.33040 1.36491 1.40774 1.44592 51 a - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 47 3.87135 0.22863 3.63643 1.85026 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 48 1.45236 0.96155 1.27850 2.25162 53 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 49 3.69612 4.78413 0.04518 4.51077 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 50 2.66080 0.82903 0.87794 2.55109 55 c - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 51 4.58921 0.06504 4.41196 3.20211 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 52 2.56011 2.49733 0.86581 0.86824 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 53 2.83588 3.92124 0.10961 3.67577 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 54 0.71274 3.41241 0.84108 3.09013 59 a - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 55 2.39907 0.94256 0.85050 2.38200 60 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 56 2.02208 1.89768 0.93533 1.12316 61 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 57 2.98466 3.67432 0.19621 2.28050 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 58 2.77359 0.90008 3.39416 0.69825 63 u - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 59 2.08331 1.29137 0.90133 1.63701 64 g - - : 1.38629 1.38629 1.38629 1.38629 0.01980 4.62497 4.62497 1.46634 0.26236 1.09861 0.40547 60 2.05119 2.91655 3.37711 0.24443 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.00995 4.61512 * 1.46634 0.26236 0.00000 * //