INFERNAL1/a [1.1.5 | Sep 2023] NAME Lnt ACC RF01711 DESC Lnt RNA STATES 193 NODES 59 CLEN 63 W 102 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 23:57:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01711/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 3.364258 CKSUM 726935998 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 56.30 NC 53.50 EFP7GF -10.7603 0.71897 ECMLC 0.50397 -10.37758 1.88016 1600000 578147 0.002076 ECMGC 0.35781 -16.00493 -0.56789 1600000 100203 0.003992 ECMLI 0.45143 -9.76381 3.39869 1600000 456783 0.002627 ECMGI 0.37390 -10.64077 3.45017 1600000 77660 0.005151 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 102 155 -7.323 -8.568 -0.058 -5.022 IL 1 1 2 1 4 1 21 103 156 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 104 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 76 - A - - MR 3 2 3 5 3 1 23 102 155 -8.792 -0.014 -7.109 1.556 -1.894 -1.876 -0.950 D 4 2 3 5 3 0 17 100 153 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 22 103 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 75 - A - - MR 6 5 3 8 3 1 22 101 154 -8.792 -0.014 -7.109 1.455 -1.690 -1.716 -0.634 D 7 5 3 8 3 0 16 99 152 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 21 102 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 74 - U - - MR 9 8 3 11 3 1 21 100 153 -8.792 -0.014 -7.109 -2.367 -2.216 -3.133 1.798 D 10 8 3 11 3 0 15 98 151 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 20 101 153 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 73 - A - - MR 12 11 3 14 3 1 21 99 152 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 13 11 3 14 3 0 14 97 150 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 19 100 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 72 - A - - MR 15 14 3 17 3 1 20 98 151 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 16 14 3 17 3 0 14 96 149 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 18 99 151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 71 - G - - MR 18 17 3 20 3 1 19 98 150 -8.792 -0.014 -7.109 -1.571 -2.564 1.643 -1.432 D 19 17 3 20 3 0 13 95 148 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 18 98 150 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 70 - A - - MR 21 20 3 23 3 1 18 97 149 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 22 20 3 23 3 0 12 94 147 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 17 97 149 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 69 - A - - MR 24 23 3 26 3 1 18 96 148 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 25 23 3 26 3 0 12 93 146 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 16 96 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - A - - MR 27 26 3 29 3 1 17 95 147 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 28 26 3 29 3 0 11 92 145 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 15 95 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - U - - MR 30 29 3 32 3 1 16 94 146 -8.792 -0.014 -7.109 -2.367 -2.216 -3.133 1.798 D 31 29 3 32 3 0 10 91 144 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 15 94 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - U - - MR 33 32 3 35 3 1 15 93 145 -8.792 -0.014 -7.109 -1.446 -0.617 -2.203 1.467 D 34 32 3 35 3 0 10 90 143 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 14 93 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - U - - MR 36 35 3 38 3 1 15 92 144 -8.792 -0.014 -7.109 -2.367 -2.216 -3.133 1.798 D 37 35 3 38 3 0 9 89 142 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 13 92 144 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - A - - MR 39 38 3 41 3 1 14 91 143 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 40 38 3 41 3 0 9 88 141 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 13 91 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - A - - MR 42 41 3 44 3 1 14 90 142 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 43 41 3 44 3 0 8 87 140 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 12 90 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 62 - A - - MR 45 44 3 47 3 1 13 89 141 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 46 44 3 47 3 0 7 86 139 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 11 89 141 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 61 - u - - MR 48 47 3 50 3 1 12 88 140 -8.792 -0.014 -7.109 -0.539 -0.087 -0.503 0.735 D 49 47 3 50 3 0 7 85 138 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 11 88 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 60 - A - - MR 51 50 3 53 3 1 12 87 139 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 52 50 3 53 3 0 6 84 137 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 10 87 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 59 - A - - MR 54 53 3 56 3 1 11 86 138 -8.792 -0.014 -7.109 1.223 -1.383 -1.474 -0.117 D 55 53 3 56 3 0 6 83 136 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 10 86 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 58 - a - - MR 57 56 3 59 3 1 11 85 137 -8.792 -0.014 -7.109 0.762 -0.559 -0.401 -0.204 D 58 56 3 59 3 0 5 82 135 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 9 85 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 57 - G - - MR 60 59 3 62 3 1 10 84 136 -8.792 -0.014 -7.109 -0.497 -1.645 1.197 -0.558 D 61 59 3 62 3 0 5 81 134 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 9 84 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 56 - U - - MR 63 62 3 65 3 1 9 83 135 -8.792 -0.014 -7.109 -2.367 -2.216 -3.133 1.798 D 64 62 3 65 3 0 4 80 133 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 8 83 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 55 - U - - MR 66 65 3 68 3 1 9 82 134 -8.792 -0.014 -7.109 -1.221 -1.404 -1.295 1.478 D 67 65 3 68 3 0 4 79 132 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 82 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 54 - C - - MR 69 68 3 71 3 1 8 81 133 -8.792 -0.014 -7.109 -0.373 1.259 -2.005 -0.772 D 70 68 3 71 3 0 4 78 131 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 81 133 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 53 - G - - MR 72 71 3 74 3 1 7 80 132 -8.792 -0.014 -7.109 -1.010 -2.810 1.656 -2.255 D 73 71 3 74 3 0 3 77 130 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 6 80 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 52 - A - - MR 75 74 3 77 3 1 7 79 131 -8.792 -0.014 -7.109 1.860 -3.303 -2.847 -2.942 D 76 74 3 77 3 0 3 77 129 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 6 79 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 51 - C - - MR 78 77 3 80 3 1 6 78 130 -8.792 -0.014 -7.109 -2.863 1.826 -3.677 -2.066 D 79 77 3 80 3 0 3 76 128 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 5 78 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 50 - A - - MR 81 80 3 83 3 1 5 77 129 -8.792 -0.094 -4.036 1.860 -3.303 -2.847 -2.942 D 82 80 3 83 3 0 2 75 127 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 5 77 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 49 - A - - MR 84 83 3 86 3 1 5 76 128 -8.712 -0.015 -7.030 1.842 -3.138 -2.696 -2.759 D 85 83 3 86 3 0 2 74 126 -7.073 -0.768 -1.303 IR 86 86 3 86 3 1 4 76 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 48 - U - - MR 87 86 3 89 3 1 4 75 127 -8.792 -0.102 -3.925 -2.367 -2.216 -3.133 1.798 D 88 86 3 89 3 0 1 73 125 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 4 75 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 47 - A - - MR 90 89 3 92 3 1 5 74 126 -8.704 -0.015 -7.022 1.231 -1.805 -0.070 -1.276 D 91 89 3 92 3 0 1 72 124 -7.122 -2.300 -0.341 IR 92 92 3 92 3 1 4 74 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 46 - A - - MR 93 92 3 95 3 1 5 73 125 -8.704 -0.015 -7.022 1.444 -1.966 -0.585 -1.485 D 94 92 3 95 3 0 1 71 124 -7.122 -0.734 -1.352 IR 95 95 3 95 3 1 3 73 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 45 - A - - MR 96 95 3 98 3 1 4 72 124 -8.792 -0.014 -7.109 1.184 -1.336 -0.864 -0.354 D 97 95 3 98 3 0 0 70 122 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 3 72 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 44 - U - - MR 99 98 3 101 3 1 4 71 123 -8.792 -0.014 -7.109 -2.367 -2.216 -3.133 1.798 D 100 98 3 101 3 0 0 69 121 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 3 71 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 43 - U - - MR 102 101 3 104 5 1 3 70 122 -7.505 -0.029 -7.321 -7.533 -8.424 -2.367 -2.216 -3.133 1.798 D 103 101 3 104 5 0 0 68 120 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 2 70 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 1 42 C G - - MP 105 104 3 109 6 2 4 69 121 -9.316 -9.255 -0.018 -8.032 -8.312 -8.707 -5.582 -5.574 -5.086 -1.746 -3.617 -5.361 3.776 -4.532 -5.190 -1.615 -5.319 -3.558 -0.233 -5.579 -1.370 -4.003 ML 106 104 3 109 6 1 1 67 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 67 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 63 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 2 68 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 2 68 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 2 41 A U - - MP 111 110 6 115 6 2 4 67 119 -9.316 -9.255 -0.018 -8.032 -8.312 -8.707 -4.682 -3.521 -4.594 3.700 -5.437 -6.619 -1.076 -4.574 -4.499 0.108 -5.087 -0.881 -1.485 -5.625 -3.012 -3.410 ML 112 110 6 115 6 1 1 65 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 65 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 61 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 66 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 2 66 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 3 40 G C - - MP 117 116 6 121 6 2 4 65 117 -9.316 -9.255 -0.018 -8.032 -8.312 -8.707 -4.811 -3.153 -4.863 0.214 -5.794 -4.891 -0.982 -5.283 -4.511 3.578 -4.844 0.478 -1.256 -4.543 -3.014 -3.747 ML 118 116 6 121 6 1 1 63 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 63 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 59 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 64 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 64 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 4 39 G C - - MP 123 122 6 127 6 2 4 63 115 -9.316 -9.255 -0.018 -8.032 -8.312 -8.707 -5.636 -3.532 -5.879 -0.429 -6.474 -5.026 -1.617 -6.143 -4.863 3.795 -5.147 -1.280 -1.983 -5.039 -3.712 -4.744 ML 124 122 6 127 6 1 1 61 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 61 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 58 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 62 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 62 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 5 38 a u - - MP 129 128 6 133 6 2 4 61 113 -9.316 -9.255 -0.018 -8.032 -8.312 -8.707 -3.897 -2.781 -3.953 2.957 -4.684 -5.169 -0.243 -4.182 -3.863 2.303 -4.381 -0.279 -0.517 -4.309 -2.186 -2.775 ML 130 128 6 133 6 1 1 59 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 59 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 57 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 60 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 60 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 6 37 A U - - MP 135 134 6 139 4 2 2 59 111 -7.441 -7.648 -0.136 -3.655 -3.916 -2.803 -3.983 3.062 -4.724 -5.286 -0.300 -4.185 -3.866 2.148 -4.399 -0.283 -0.573 -4.398 -2.240 -2.790 ML 136 134 6 139 4 1 1 58 110 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 57 109 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 56 108 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 59 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 59 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 7 - A - - - ML 141 140 6 143 3 1 2 57 109 -8.336 -0.016 -6.990 1.160 -0.780 -1.338 -0.345 D 142 140 6 143 3 0 0 54 107 -7.005 -2.518 -0.291 IL 143 143 3 143 3 1 1 58 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 8 - a - - - ML 144 143 3 146 3 1 1 56 108 -2.767 -0.593 -2.393 0.564 -0.206 -1.145 0.266 D 145 143 3 146 3 0 0 54 106 -7.005 -2.518 -0.291 IL 146 146 3 146 3 1 1 57 110 -0.898 -1.189 -5.341 0.000 0.000 0.000 0.000 [ MATL 43 ] 12 - a - - - ML 147 146 3 149 3 1 1 55 107 -8.046 -0.019 -6.700 0.704 -0.914 -1.088 0.454 D 148 146 3 149 3 0 0 53 106 -8.160 -0.276 -2.552 IL 149 149 3 149 3 1 1 55 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 13 - a - - - ML 150 149 3 152 3 1 1 54 106 -2.849 -0.228 -7.081 0.945 -1.184 -1.330 0.306 D 151 149 3 152 3 0 0 50 102 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 54 106 -1.963 -0.506 -4.663 0.000 0.000 0.000 0.000 [ MATL 45 ] 15 - U - - - ML 153 152 3 155 3 1 1 52 105 -3.321 -0.581 -2.110 -0.316 -0.350 -1.484 1.039 D 154 152 3 155 3 0 0 46 98 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 58 110 -0.508 -1.842 -5.809 0.000 0.000 0.000 0.000 [ MATL 46 ] 23 - a - - - ML 156 155 3 158 3 1 1 26 44 -8.061 -0.019 -6.715 0.935 -1.016 -1.132 0.186 D 157 155 3 158 3 0 0 24 43 -8.122 -1.966 -0.434 IL 158 158 3 158 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 24 - C - - - ML 159 158 3 161 3 1 1 25 43 -8.156 -0.475 -1.851 -2.214 1.730 -3.045 -1.533 D 160 158 3 161 3 0 0 24 42 -7.844 -0.352 -2.235 IL 161 161 3 161 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 25 - u - - - ML 162 161 3 164 3 1 1 24 42 -8.064 -0.019 -6.719 0.405 -0.883 -1.136 0.747 D 163 161 3 164 3 0 0 22 41 -8.113 -0.286 -2.505 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 26 - U - - - ML 165 164 3 167 3 1 1 22 41 -8.427 -0.123 -3.667 -1.271 -0.177 -2.045 1.298 D 166 164 3 167 3 0 0 22 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 27 - G - - - ML 168 167 3 170 3 1 1 21 40 -8.320 -0.208 -2.929 -2.317 -3.637 1.846 -3.020 D 169 167 3 170 3 0 0 20 39 -7.107 -2.620 -0.269 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 28 - a - - - ML 171 170 3 173 3 1 1 20 39 -2.725 -0.517 -2.737 0.924 -1.535 0.316 -0.963 D 172 170 3 173 3 0 0 20 39 -0.500 -3.440 -2.318 IL 173 173 3 173 3 1 1 20 39 -1.976 -0.475 -5.254 0.000 0.000 0.000 0.000 [ MATL 52 ] 31 - a - - - ML 174 173 3 176 3 1 1 18 37 -8.251 -0.017 -6.906 0.878 -0.549 -1.153 0.042 D 175 173 3 176 3 0 0 18 36 -7.474 -0.474 -1.866 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 32 - G - - - ML 177 176 3 179 3 1 1 17 36 -8.427 -0.015 -7.081 -0.561 -2.504 1.530 -1.952 D 178 176 3 179 3 0 0 17 35 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 33 - u - - - ML 180 179 3 182 3 1 1 16 34 -8.427 -0.015 -7.081 0.046 0.075 -0.486 0.263 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 34 - u - - - ML 183 182 3 185 3 1 1 14 33 -8.427 -0.015 -7.081 -0.386 0.368 -1.490 0.667 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 35 - a - - - ML 186 185 3 188 3 1 1 13 31 -8.427 -0.015 -7.081 0.322 -0.659 -0.156 0.286 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 36 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.152 -0.826 -1.374 -0.273 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Lnt ACC RF01711 DESC Lnt RNA LENG 63 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 23:57:21 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01711/CM NSEQ 10 EFFN 3.862305 CKSUM 726935998 STATS LOCAL MSV -7.8712 0.71897 STATS LOCAL VITERBI -8.6964 0.71897 STATS LOCAL FORWARD -3.1465 0.71897 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.97634 1.79598 1.69200 1.29755 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 0.00000 * 1 3.84198 0.12582 3.69129 2.63343 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 2 0.16284 3.55988 2.40642 3.45172 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 3 2.54766 3.40635 0.16183 3.27056 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 4 2.98912 3.83755 0.09954 3.77816 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 5 0.63842 2.94458 1.02911 2.78184 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 6 0.56848 2.99092 1.12691 2.82448 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.09835 4.26918 2.52980 1.46634 0.26236 1.09861 0.40547 7 0.55466 1.94789 2.37881 1.65810 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03041 4.20124 4.20124 1.46634 0.26236 2.04041 0.13923 8 0.98262 1.52510 2.21950 1.20595 8 a - - _ 1.38629 1.38629 1.38629 1.38629 0.48220 1.76972 1.55025 1.12262 0.39368 2.04041 0.13923 9 0.88158 2.05899 2.18101 1.06316 12 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03803 3.98157 3.98157 1.46634 0.26236 0.10078 2.34477 10 0.70779 2.26643 2.36845 1.17130 13 a - - _ 1.38629 1.38629 1.38629 1.38629 0.19131 1.83179 4.26918 0.16645 1.87512 1.09861 0.40547 11 1.62795 1.63566 2.47337 0.64523 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.46784 2.13325 1.36574 1.91716 0.15902 1.09861 0.40547 12 0.71595 2.13361 2.21727 1.25893 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03758 3.99316 3.99316 1.46634 0.26236 1.38132 0.28935 13 3.11851 0.15397 3.69263 2.60951 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.39656 4.06578 1.17047 1.46634 0.26236 0.13218 2.08892 14 1.09875 2.03937 2.21645 0.84955 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03748 3.99588 3.99588 1.46634 0.26236 0.10487 2.30703 15 2.37141 1.51079 2.91122 0.45965 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.11064 4.26918 2.39968 1.46634 0.26236 1.09861 0.40547 16 3.15964 4.09234 0.08869 3.65996 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03078 4.18932 4.18932 1.46634 0.26236 0.26881 1.44516 17 0.72387 2.52972 1.14727 2.13754 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.32947 1.94273 1.98500 0.49790 0.93599 1.09861 0.40547 18 0.75627 1.77818 2.23113 1.36950 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03245 4.13749 4.13749 1.46634 0.26236 0.18541 1.77644 19 1.81320 3.23813 0.30025 2.86475 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 20 1.36201 1.32008 1.72469 1.20895 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 21 1.68397 1.10637 2.48120 0.91638 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 22 1.16066 1.85968 1.48763 1.18714 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 23 0.56100 1.98316 2.40472 1.60229 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 24 3.04498 1.26719 2.79217 0.49513 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 25 3.00670 1.15480 2.74743 0.55978 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 26 3.94707 0.11983 3.69060 2.67856 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 27 3.48901 0.26250 3.23316 1.82691 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 28 3.68057 2.77233 3.37194 0.13016 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 29 2.92566 3.87446 0.10618 3.63645 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 30 3.19819 3.06655 3.73325 0.11803 43 U - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 31 3.19819 3.06655 3.73325 0.11803 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 32 0.54145 2.37118 2.01328 1.65456 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.09896 4.26918 2.52291 1.46634 0.26236 1.09861 0.40547 33 0.36003 2.85470 1.79911 2.53423 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03043 4.20065 4.20065 1.46634 0.26236 2.04552 0.13847 34 0.50693 2.73932 1.42419 2.38226 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.03043 4.20065 4.20065 1.46634 0.26236 0.29925 1.35237 35 3.19819 3.06655 3.73325 0.11803 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.09289 4.26918 2.59413 1.46634 0.26236 1.09861 0.40547 36 0.09138 3.73451 3.41334 3.48949 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.03025 4.20654 4.20654 1.46634 0.26236 0.31816 1.30006 37 0.08083 3.85162 3.52113 3.61776 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 38 3.57457 0.09920 4.12461 2.99093 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 39 0.08083 3.85162 3.52113 3.61776 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 40 2.14599 3.46088 0.21584 3.08384 53 G - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 41 1.67996 0.47162 2.89562 2.00721 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 42 2.34108 2.45323 2.32691 0.32828 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 43 3.19819 3.06655 3.73325 0.11803 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 44 1.77652 2.60359 0.52310 1.80737 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 45 0.84420 1.77957 1.66832 1.54728 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 46 0.51185 2.41423 2.48190 1.48019 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 47 0.08083 3.85162 3.52113 3.61776 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 48 1.80443 1.43808 1.73340 0.86425 61 u - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 49 0.08083 3.85162 3.52113 3.61776 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 50 0.08083 3.85162 3.52113 3.61776 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 51 0.08083 3.85162 3.52113 3.61776 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 52 3.19819 3.06655 3.73325 0.11803 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 53 2.50294 1.83877 3.02966 0.34135 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 54 3.19819 3.06655 3.73325 0.11803 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 55 0.08083 3.85162 3.52113 3.61776 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 56 0.08083 3.85162 3.52113 3.61776 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 57 0.08083 3.85162 3.52113 3.61776 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 58 2.59555 3.29267 0.22167 2.44119 71 G - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 59 0.08083 3.85162 3.52113 3.61776 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 60 0.08083 3.85162 3.52113 3.61776 73 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 61 3.19819 3.06655 3.73325 0.11803 74 U - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 62 0.35092 2.64187 2.66865 1.86185 75 A - - : 1.38629 1.38629 1.38629 1.38629 0.02839 4.26918 4.26918 1.46634 0.26236 1.09861 0.40547 63 0.28184 2.79255 2.78931 2.09659 76 A - - : 1.38629 1.38629 1.38629 1.38629 0.01429 4.25509 * 1.46634 0.26236 0.00000 * //