INFERNAL1/a [1.1.4 | Dec 2020] NAME Lnt ACC RF01711 DESC Lnt RNA STATES 193 NODES 59 CLEN 63 W 109 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:37:18 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 3.471680 CKSUM 726935998 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 61.10 NC 47.40 EFP7GF -10.8745 0.71898 ECMLC 0.51781 -10.03801 1.88575 1600000 576229 0.002083 ECMGC 0.35347 -16.45980 -0.77735 1600000 102212 0.003913 ECMLI 0.45064 -9.86761 3.31458 1600000 456131 0.002631 ECMGI 0.36960 -11.00484 3.24580 1600000 77532 0.005159 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 109 169 -7.352 -8.598 -0.057 -5.051 IL 1 1 2 1 4 1 21 110 170 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 110 170 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 76 - A - - MR 3 2 3 5 3 1 23 109 169 -8.819 -0.014 -7.137 1.548 -1.884 -1.878 -0.907 D 4 2 3 5 3 0 17 107 167 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 22 109 169 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 75 - A - - MR 6 5 3 8 3 1 22 108 168 -8.819 -0.014 -7.137 1.336 -1.523 -1.591 -0.329 D 7 5 3 8 3 0 16 106 166 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 21 108 168 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 74 - U - - MR 9 8 3 11 3 1 21 107 167 -8.819 -0.014 -7.137 -2.423 -2.263 -3.190 1.806 D 10 8 3 11 3 0 15 105 165 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 20 107 167 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 73 - A - - MR 12 11 3 14 3 1 21 106 166 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 13 11 3 14 3 0 14 104 164 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 19 106 166 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 72 - A - - MR 15 14 3 17 3 1 20 105 165 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 16 14 3 17 3 0 14 103 163 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 19 105 165 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 71 - G - - MR 18 17 3 20 3 1 19 104 164 -8.819 -0.014 -7.137 -1.682 -2.702 1.679 -1.583 D 19 17 3 20 3 0 13 102 162 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 18 104 164 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 70 - A - - MR 21 20 3 23 3 1 18 103 163 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 22 20 3 23 3 0 12 101 161 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 17 103 163 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 69 - A - - MR 24 23 3 26 3 1 18 102 162 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 25 23 3 26 3 0 12 100 160 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 16 102 162 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - A - - MR 27 26 3 29 3 1 17 101 161 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 28 26 3 29 3 0 11 99 159 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 15 101 161 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - U - - MR 30 29 3 32 3 1 16 100 160 -8.819 -0.014 -7.137 -2.423 -2.263 -3.190 1.806 D 31 29 3 32 3 0 10 98 158 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 15 100 160 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - U - - MR 33 32 3 35 3 1 15 99 159 -8.819 -0.014 -7.137 -1.375 -0.365 -2.141 1.385 D 34 32 3 35 3 0 10 97 157 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 14 99 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - U - - MR 36 35 3 38 3 1 15 98 158 -8.819 -0.014 -7.137 -2.423 -2.263 -3.190 1.806 D 37 35 3 38 3 0 9 96 156 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 13 98 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - A - - MR 39 38 3 41 3 1 14 97 157 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 40 38 3 41 3 0 9 95 155 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 13 97 157 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - A - - MR 42 41 3 44 3 1 14 96 156 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 43 41 3 44 3 0 8 94 154 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 12 96 156 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 62 - A - - MR 45 44 3 47 3 1 13 95 155 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 46 44 3 47 3 0 7 93 153 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 11 95 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 61 - u - - MR 48 47 3 50 3 1 12 94 154 -8.819 -0.014 -7.137 -0.569 -0.185 -0.514 0.804 D 49 47 3 50 3 0 7 92 152 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 11 94 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 60 - A - - MR 51 50 3 53 3 1 12 93 153 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 52 50 3 53 3 0 6 91 151 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 10 94 153 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 59 - A - - MR 54 53 3 56 3 1 11 92 152 -8.819 -0.014 -7.137 1.138 -1.320 -1.432 0.040 D 55 53 3 56 3 0 6 90 150 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 10 93 152 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 58 - a - - MR 57 56 3 59 3 1 11 91 151 -8.819 -0.014 -7.137 0.708 -0.404 -0.418 -0.213 D 58 56 3 59 3 0 5 89 149 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 9 92 151 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 57 - G - - MR 60 59 3 62 3 1 10 90 150 -8.819 -0.014 -7.137 -0.415 -1.501 1.060 -0.302 D 61 59 3 62 3 0 5 88 148 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 9 91 150 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 56 - U - - MR 63 62 3 65 3 1 9 89 149 -8.819 -0.014 -7.137 -2.423 -2.263 -3.190 1.806 D 64 62 3 65 3 0 4 87 147 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 8 90 149 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 55 - U - - MR 66 65 3 68 3 1 9 88 148 -8.819 -0.014 -7.137 -1.284 -1.449 -1.371 1.504 D 67 65 3 68 3 0 4 86 146 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 7 89 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 54 - C - - MR 69 68 3 71 3 1 8 87 147 -8.819 -0.014 -7.137 -0.506 1.328 -2.123 -0.849 D 70 68 3 71 3 0 4 85 145 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 88 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 53 - G - - MR 72 71 3 74 3 1 7 86 146 -8.819 -0.014 -7.137 -1.158 -2.941 1.692 -2.386 D 73 71 3 74 3 0 3 84 144 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 6 87 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 52 - A - - MR 75 74 3 77 3 1 7 85 145 -8.819 -0.014 -7.137 1.866 -3.361 -2.900 -3.005 D 76 74 3 77 3 0 3 83 143 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 6 86 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 51 - C - - MR 78 77 3 80 3 1 6 84 144 -8.819 -0.014 -7.137 -2.930 1.834 -3.741 -2.122 D 79 77 3 80 3 0 2 82 142 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 5 85 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 50 - A - - MR 81 80 3 83 3 1 5 83 143 -8.819 -0.085 -4.192 1.866 -3.361 -2.900 -3.005 D 82 80 3 83 3 0 2 81 141 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 5 84 144 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 49 - A - - MR 84 83 3 86 3 1 5 82 142 -8.749 -0.014 -7.067 1.851 -3.216 -2.767 -2.845 D 85 83 3 86 3 0 2 81 141 -7.020 -0.807 -1.250 IR 86 86 3 86 3 1 4 83 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 48 - U - - MR 87 86 3 89 3 1 4 81 141 -8.819 -0.091 -4.091 -2.423 -2.263 -3.190 1.806 D 88 86 3 89 3 0 1 79 139 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 4 82 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 47 - A - - MR 90 89 3 92 3 1 5 80 140 -8.743 -0.014 -7.061 1.160 -1.819 0.097 -1.281 D 91 89 3 92 3 0 1 78 138 -7.062 -2.240 -0.357 IR 92 92 3 92 3 1 4 81 141 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 46 - A - - MR 93 92 3 95 3 1 4 79 139 -8.743 -0.014 -7.061 1.350 -1.916 -0.304 -1.413 D 94 92 3 95 3 0 1 78 138 -7.062 -0.776 -1.292 IR 95 95 3 95 3 1 3 80 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 45 - A - - MR 96 95 3 98 3 1 4 78 138 -8.819 -0.014 -7.137 1.097 -1.253 -0.887 -0.150 D 97 95 3 98 3 0 0 76 136 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 3 79 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 44 - U - - MR 99 98 3 101 3 1 4 77 137 -8.819 -0.014 -7.137 -2.423 -2.263 -3.190 1.806 D 100 98 3 101 3 0 0 75 135 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 3 78 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 43 - U - - MR 102 101 3 104 5 1 3 76 136 -7.532 -0.029 -7.347 -7.559 -8.451 -2.423 -2.263 -3.190 1.806 D 103 101 3 104 5 0 0 75 135 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 2 76 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 1 42 C G - - MP 105 104 3 109 6 2 4 75 135 -9.330 -9.270 -0.018 -8.046 -8.326 -8.721 -5.648 -5.646 -5.140 -1.816 -3.661 -5.405 3.785 -4.583 -5.249 -1.690 -5.368 -3.633 -0.287 -5.640 -1.418 -4.060 ML 106 104 3 109 6 1 1 73 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 73 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 69 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 2 75 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 2 75 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 2 41 A U - - MP 111 110 6 115 6 2 4 73 133 -9.330 -9.270 -0.018 -8.046 -8.326 -8.721 -4.740 -3.569 -4.641 3.714 -5.522 -6.714 -1.157 -4.617 -4.551 0.044 -5.142 -0.924 -1.565 -5.705 -3.092 -3.459 ML 112 110 6 115 6 1 1 71 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 71 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 67 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 73 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 2 73 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 3 40 G C - - MP 117 116 6 121 6 2 4 71 131 -9.330 -9.270 -0.018 -8.046 -8.326 -8.721 -4.709 -3.108 -4.745 0.295 -5.701 -4.898 -0.905 -5.168 -4.464 3.516 -4.808 0.802 -1.173 -4.494 -2.927 -3.626 ML 118 116 6 121 6 1 1 70 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 69 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 66 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 71 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 71 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 4 39 G C - - MP 123 122 6 127 6 2 4 70 129 -9.330 -9.270 -0.018 -8.046 -8.326 -8.721 -5.690 -3.559 -5.948 -0.469 -6.548 -5.045 -1.677 -6.209 -4.894 3.802 -5.175 -1.311 -2.043 -5.073 -3.777 -4.811 ML 124 122 6 127 6 1 1 68 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 67 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 64 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 69 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 69 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 5 38 a u - - MP 129 128 6 133 6 2 4 68 127 -9.330 -9.270 -0.018 -8.046 -8.326 -8.721 -3.921 -2.783 -3.961 2.831 -4.712 -5.082 -0.235 -4.226 -3.903 2.483 -4.400 -0.298 -0.507 -4.252 -2.185 -2.796 ML 130 128 6 133 6 1 1 66 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 65 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 63 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 67 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 67 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 6 37 A U - - MP 135 134 6 139 4 2 2 66 125 -7.472 -7.679 -0.123 -3.811 -3.945 -2.822 -4.010 3.053 -4.773 -5.305 -0.338 -4.219 -3.896 2.186 -4.426 -0.301 -0.607 -4.418 -2.278 -2.817 ML 136 134 6 139 4 1 1 65 125 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 64 124 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 62 122 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 66 126 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 65 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 7 - A - - - ML 141 140 6 143 3 1 2 64 124 -8.377 -0.015 -7.031 1.153 -0.766 -1.353 -0.329 D 142 140 6 143 3 0 0 61 121 -6.938 -2.451 -0.306 IL 143 143 3 143 3 1 1 64 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 8 - a - - - ML 144 143 3 146 3 1 1 63 123 -2.692 -0.581 -2.500 0.636 -0.196 -1.172 0.175 D 145 143 3 146 3 0 0 60 120 -6.938 -2.451 -0.306 IL 146 146 3 146 3 1 1 64 124 -0.882 -1.205 -5.409 0.000 0.000 0.000 0.000 [ MATL 43 ] 12 - a - - - ML 147 146 3 149 3 1 1 61 121 -8.110 -0.019 -6.764 0.819 -0.981 -1.131 0.347 D 148 146 3 149 3 0 0 60 120 -8.093 -0.290 -2.484 IL 149 149 3 149 3 1 1 62 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 13 - a - - - ML 150 149 3 152 3 1 1 60 120 -2.841 -0.229 -7.111 0.988 -1.220 -1.360 0.260 D 151 149 3 152 3 0 0 56 116 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 60 120 -1.974 -0.502 -4.674 0.000 0.000 0.000 0.000 [ MATL 45 ] 15 - u - - - ML 153 152 3 155 3 1 1 59 119 -2.891 -0.620 -2.221 -0.142 -0.417 -1.418 0.979 D 154 152 3 155 3 0 0 51 111 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 65 125 -0.443 -1.997 -6.148 0.000 0.000 0.000 0.000 [ MATL 46 ] 23 - a - - - ML 156 155 3 158 3 1 1 26 44 -8.122 -0.018 -6.776 0.987 -1.070 -1.180 0.138 D 157 155 3 158 3 0 0 24 43 -8.060 -2.008 -0.419 IL 158 158 3 158 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 24 - C - - - ML 159 158 3 161 3 1 1 25 43 -8.204 -0.543 -1.689 -2.331 1.751 -3.162 -1.628 D 160 158 3 161 3 0 0 24 42 -7.800 -0.365 -2.192 IL 161 161 3 161 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 25 - u - - - ML 162 161 3 164 3 1 1 24 42 -8.035 -0.020 -6.689 0.356 -0.868 -1.133 0.779 D 163 161 3 164 3 0 0 22 41 -8.276 -0.253 -2.668 IL 164 164 3 164 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 26 - U - - - ML 165 164 3 167 3 1 1 22 41 -8.457 -0.131 -3.577 -1.252 -0.023 -2.034 1.234 D 166 164 3 167 3 0 0 22 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 27 - G - - - ML 168 167 3 170 3 1 1 21 40 -8.342 -0.185 -3.089 -2.359 -3.683 1.851 -3.065 D 169 167 3 170 3 0 0 20 39 -7.171 -2.684 -0.256 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 28 - A - - - ML 171 170 3 173 3 1 1 20 39 -2.672 -0.491 -2.927 1.038 -1.588 0.169 -1.027 D 172 170 3 173 3 0 0 20 39 -0.510 -3.416 -2.294 IL 173 173 3 173 3 1 1 20 39 -1.962 -0.479 -5.270 0.000 0.000 0.000 0.000 [ MATL 52 ] 31 - a - - - ML 174 173 3 176 3 1 1 18 37 -8.303 -0.016 -6.957 0.951 -0.568 -1.205 -0.060 D 175 173 3 176 3 0 0 18 36 -7.383 -0.511 -1.775 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 32 - G - - - ML 177 176 3 179 3 1 1 17 36 -8.457 -0.015 -7.111 -0.249 -2.338 1.417 -1.788 D 178 176 3 179 3 0 0 17 35 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 33 - u - - - ML 180 179 3 182 3 1 1 16 34 -8.457 -0.015 -7.111 -0.019 0.229 -0.582 0.230 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 34 - u - - - ML 183 182 3 185 3 1 1 14 33 -8.457 -0.015 -7.111 -0.373 0.486 -1.514 0.563 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 35 - a - - - ML 186 185 3 188 3 1 1 13 31 -8.457 -0.015 -7.111 0.375 -0.650 -0.252 0.294 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 36 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.071 -0.826 -1.334 -0.093 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Lnt ACC RF01711 DESC Lnt RNA LENG 63 MAXL 162 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:37:18 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 10 EFFN 3.989258 CKSUM 726935998 STATS LOCAL MSV -7.6878 0.71898 STATS LOCAL VITERBI -8.6889 0.71898 STATS LOCAL FORWARD -3.1730 0.71898 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.98061 1.77863 1.69616 1.29953 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 0.00000 * 1 3.88929 0.12015 3.74269 2.67280 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 2 0.15498 3.61438 2.44730 3.50296 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 3 2.49291 3.35592 0.17171 3.21318 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 4 3.01753 3.87670 0.09608 3.81820 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 5 0.72470 2.93172 0.91735 2.77020 5 a - - < 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 6 0.57547 3.01821 1.10631 2.84911 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.08890 4.28679 2.64063 1.46634 0.26236 1.09861 0.40547 7 0.55958 1.93757 2.39048 1.64552 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02961 4.22750 4.22750 1.46634 0.26236 1.97227 0.14982 8 0.93091 1.51722 2.24086 1.27254 8 a - - _ 1.38629 1.38629 1.38629 1.38629 0.46923 1.72653 1.62650 1.12097 0.39447 1.97227 0.14982 9 0.79839 2.10907 2.21511 1.14114 12 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03632 4.02657 4.02657 1.46634 0.26236 0.10726 2.28565 10 0.67723 2.29493 2.39291 1.20449 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.19116 1.83104 4.28679 0.16356 1.89124 1.09861 0.40547 11 1.49693 1.68593 2.42296 0.68865 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.49606 1.86276 1.44465 1.92470 0.15773 1.09861 0.40547 12 0.67832 2.17537 2.25502 1.29428 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03599 4.03566 4.03566 1.46634 0.26236 1.41697 0.27766 13 3.20407 0.14168 3.77579 2.67968 24 C - - _ 1.38629 1.38629 1.38629 1.38629 0.44778 4.09806 1.06610 1.46634 0.26236 0.13807 2.04827 14 1.13430 2.02873 2.21448 0.82636 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03847 3.97019 3.97019 1.46634 0.26236 0.09207 2.43089 15 2.35737 1.39641 2.90433 0.50573 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.11606 4.28679 2.34521 1.46634 0.26236 1.09861 0.40547 16 3.18948 4.12524 0.08587 3.69168 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03041 4.20114 4.20114 1.46634 0.26236 0.25228 1.50071 17 0.64267 2.57213 1.25284 2.18883 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.31592 1.90390 2.10461 0.49075 0.94719 1.09861 0.40547 18 0.70375 1.79216 2.27286 1.44538 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03132 4.17234 4.17234 1.46634 0.26236 0.20342 1.69245 19 1.58202 3.11966 0.37664 2.74719 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 20 1.41072 1.20857 1.79451 1.23374 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 21 1.67460 1.02135 2.50095 0.99289 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 22 1.12228 1.85289 1.55761 1.18077 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 23 0.61823 1.98574 2.37168 1.46751 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 24 3.06993 1.24123 2.81911 0.50271 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 25 2.99910 1.02619 2.73560 0.64066 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 26 3.98403 0.11582 3.73123 2.70621 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 27 3.43647 0.30473 3.17906 1.66668 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 28 3.73149 2.81747 3.42631 0.12355 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 29 2.96544 3.92582 0.10133 3.68498 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 30 3.23872 3.10094 3.77464 0.11335 43 U - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 31 3.23872 3.10094 3.77464 0.11335 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 32 0.60300 2.31049 2.02991 1.50385 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.08943 4.28679 2.63388 1.46634 0.26236 1.09861 0.40547 33 0.42459 2.82195 1.59363 2.48550 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.02963 4.22698 4.22698 1.46634 0.26236 1.97715 0.14904 34 0.55677 2.75294 1.30387 2.38900 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.02963 4.22698 4.22698 1.46634 0.26236 0.32424 1.28400 35 3.23872 3.10094 3.77464 0.11335 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.08452 4.28679 2.69868 1.46634 0.26236 1.09861 0.40547 36 0.08614 3.79085 3.46512 3.55129 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.02948 4.23175 4.23175 1.46634 0.26236 0.34261 1.23758 37 0.07741 3.89309 3.55948 3.66299 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 38 3.62176 0.09482 4.16763 3.03167 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 39 0.07741 3.89309 3.55948 3.66299 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 40 2.25376 3.55627 0.19261 3.17843 53 G - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 41 1.77883 0.42423 2.98626 2.06819 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 42 2.38903 2.48747 2.38270 0.31080 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 43 3.23872 3.10094 3.77464 0.11335 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 44 1.71536 2.49871 0.61664 1.61871 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 45 0.88277 1.66527 1.68045 1.55620 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 46 0.57148 2.36897 2.44944 1.36496 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 47 0.07741 3.89309 3.55948 3.66299 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 48 1.82806 1.51045 1.74114 0.81386 61 u - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 49 0.07741 3.89309 3.55948 3.66299 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 50 0.07741 3.89309 3.55948 3.66299 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 51 0.07741 3.89309 3.55948 3.66299 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 52 3.23872 3.10094 3.77464 0.11335 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 53 2.45047 1.65004 2.98469 0.39876 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 54 3.23872 3.10094 3.77464 0.11335 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 55 0.07741 3.89309 3.55948 3.66299 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 56 0.07741 3.89309 3.55948 3.66299 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 57 0.07741 3.89309 3.55948 3.66299 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 58 2.67704 3.39194 0.19912 2.54922 71 G - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 59 0.07741 3.89309 3.55948 3.66299 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 60 0.07741 3.89309 3.55948 3.66299 73 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 61 3.23872 3.10094 3.77464 0.11335 74 U - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 62 0.43327 2.51924 2.57299 1.63585 75 A - - : 1.38629 1.38629 1.38629 1.38629 0.02788 4.28679 4.28679 1.46634 0.26236 1.09861 0.40547 63 0.28776 2.78597 2.79118 2.06327 76 A - - : 1.38629 1.38629 1.38629 1.38629 0.01404 4.27294 * 1.46634 0.26236 0.00000 * //