INFERNAL1/a [1.1.5 | Sep 2023] NAME Lacto-rpoB ACC RF01709 DESC Lacto-rpoB RNA STATES 178 NODES 48 CLEN 58 W 74 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 22:46:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01709/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 31 EFFN 26.621704 CKSUM 3091167499 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.40 NC 39.70 EFP7GF -13.0563 0.72462 ECMLC 0.56035 -5.82076 5.23458 1600000 588238 0.002040 ECMGC 0.41389 -16.47004 -1.67378 1600000 182692 0.002189 ECMLI 0.55544 -3.66017 6.72601 1600000 384217 0.003123 ECMGI 0.41084 -14.43531 -0.09803 1600000 144617 0.002766 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -9.950 -10.157 -0.007 -8.571 IL 1 1 2 1 4 1 18 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 19 74 93 -10.873 -0.003 -9.527 1.255 -3.294 -0.238 -0.594 D 4 2 3 5 3 0 10 72 92 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 18 73 92 -10.873 -0.003 -9.527 -0.178 -2.893 -1.128 1.336 D 7 5 3 8 3 0 9 71 91 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 17 72 91 -10.873 -0.003 -9.527 -0.563 -1.600 -1.910 1.447 D 10 8 3 11 3 0 9 70 90 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 16 71 90 -10.873 -0.003 -9.527 -4.048 -3.977 -0.114 1.562 D 13 11 3 14 3 0 8 69 89 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 15 70 89 -10.873 -0.003 -9.527 -1.120 -3.904 1.604 -1.207 D 16 14 3 17 3 0 7 68 88 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 13 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 14 69 88 -10.873 -0.003 -9.527 0.249 -3.941 -4.572 1.435 D 19 17 3 20 3 0 6 67 87 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 12 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 14 68 87 -11.180 -0.003 -9.497 -1.063 1.544 -2.163 -1.392 D 22 20 3 23 3 0 5 66 86 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 10 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 62 - A - - MR 24 23 3 26 3 1 13 67 86 -11.180 -0.003 -9.497 1.514 -0.705 -3.805 -1.125 D 25 23 3 26 3 0 3 65 85 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 9 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 61 - C - - MR 27 26 3 29 3 1 12 66 85 -11.180 -0.003 -9.497 0.541 1.086 -3.952 -1.480 D 28 26 3 29 3 0 2 64 84 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 8 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 60 - u - - MR 30 29 3 32 3 1 11 65 84 -11.180 -0.003 -9.497 0.735 -2.626 -0.996 0.742 D 31 29 3 32 3 0 2 63 83 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 59 - A - - MR 33 32 3 35 3 1 10 64 83 -11.180 -0.003 -9.497 1.716 -0.730 -4.377 -3.969 D 34 32 3 35 3 0 1 62 82 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 6 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 58 - A - - MR 36 35 3 38 3 1 9 63 82 -11.180 -0.003 -9.497 1.887 -2.174 -4.813 -4.521 D 37 35 3 38 3 0 0 61 81 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 5 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 57 - A - - MR 39 38 3 41 3 1 9 62 81 -11.180 -0.003 -9.497 1.589 -2.074 -0.523 -4.077 D 40 38 3 41 3 0 0 60 80 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 5 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 56 - u - - MR 42 41 3 44 3 1 8 61 80 -11.180 -0.003 -9.497 -0.094 0.066 -1.582 0.750 D 43 41 3 44 3 0 0 59 79 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 4 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - u - - MR 45 44 3 47 3 1 7 60 79 -11.180 -0.003 -9.497 0.207 -0.552 -1.023 0.741 D 46 44 3 47 3 0 0 58 78 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - G - - MR 48 47 3 50 3 1 7 59 78 -11.180 -0.003 -9.497 -0.256 -5.140 1.630 -4.693 D 49 47 3 50 3 0 0 57 77 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - A - - MR 51 50 3 53 3 1 6 58 77 -11.180 -0.003 -9.497 1.702 -1.200 -2.059 -3.798 D 52 50 3 53 3 0 0 56 76 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 2 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 52 - a - - MR 54 53 3 56 3 1 5 57 76 -11.180 -0.003 -9.497 0.840 0.662 -1.049 -2.799 D 55 53 3 56 3 0 0 55 75 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 51 - g - - MR 57 56 3 59 3 1 4 56 75 -11.180 -0.003 -9.497 0.348 -3.026 0.785 -0.183 D 58 56 3 59 3 0 0 54 74 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 50 - A - - MR 60 59 3 62 5 1 3 55 74 -9.834 -0.006 -9.649 -9.861 -10.753 1.988 -6.953 -6.293 -6.468 D 61 59 3 62 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 8 49 g c - - MP 63 62 3 67 6 2 2 54 73 -3.475 -10.925 -0.283 -4.562 -9.981 -4.492 -5.242 -3.887 0.275 2.251 -6.217 -5.711 -1.299 -5.737 -5.474 2.871 -5.742 -0.084 -1.561 -4.960 -0.424 -4.029 ML 64 62 3 67 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 72 -4.659 -4.922 -0.147 -6.577 -7.353 -7.014 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 10 48 u a - - MP 69 68 6 73 4 2 2 52 71 -9.795 -3.126 -0.273 -4.139 -4.575 -4.493 -4.660 0.934 -3.905 -5.503 1.531 -4.479 -4.606 -0.527 -5.141 -0.293 2.917 -4.827 -0.159 -0.187 ML 70 68 6 73 4 1 1 52 72 -5.079 -0.676 -1.827 -3.991 1.605 -1.936 -1.612 -1.439 MR 71 68 6 73 4 1 1 51 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 48 68 -6.393 -6.074 -4.090 -0.129 IL 73 73 5 73 4 1 1 53 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 52 71 -1.361 -0.737 -6.553 0.000 0.000 0.000 0.000 [ MATL 23 ] 11 - a - - - ML 75 74 6 77 3 1 2 46 65 -10.721 -0.003 -9.375 0.288 0.044 -0.761 0.212 D 76 74 6 77 3 0 0 44 63 -9.163 -4.676 -0.060 IL 77 77 3 77 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 12 - u - - - ML 78 77 3 80 3 1 1 45 64 -11.029 -0.003 -9.347 -0.197 -0.321 -0.406 0.653 D 79 77 3 80 3 0 0 44 63 -8.005 -0.114 -3.788 IL 80 80 3 80 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 45 - u - - MR 81 80 3 83 3 1 1 44 63 -11.180 -0.003 -9.497 -0.266 -0.400 -0.902 0.907 D 82 80 3 83 3 0 0 43 61 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 44 - U - - MR 84 83 3 86 5 1 1 43 62 -9.834 -0.006 -9.649 -9.861 -10.753 -0.456 -2.838 -0.526 1.285 D 85 83 3 86 5 0 0 42 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 13 43 g c - - MP 87 86 3 91 6 2 2 42 61 -10.986 -10.925 -0.006 -9.701 -9.981 -10.376 0.551 -3.692 -4.657 1.774 -5.401 -5.314 -0.971 -5.249 -4.992 2.505 -5.329 1.220 0.006 -4.579 -0.572 -0.668 ML 88 86 3 91 6 1 1 41 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 14 42 a u - - MP 93 92 6 97 6 2 2 40 59 -10.986 -3.987 -0.099 -9.701 -9.981 -10.376 0.901 0.810 -2.982 1.405 -2.952 -3.829 0.788 -3.316 -3.050 0.976 -3.618 -0.264 1.226 -3.119 0.933 -2.231 ML 94 92 6 97 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 40 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 39 58 -3.653 -0.189 -7.164 -5.332 -6.438 0.000 0.000 0.000 0.000 [ MATP 29 ] 15 40 U G - - MP 99 98 6 103 6 2 2 38 56 -10.986 -10.925 -0.006 -9.701 -9.981 -10.376 -7.475 -7.591 -6.930 0.775 -5.358 -7.170 2.227 -6.238 -6.991 -3.587 -7.178 -5.671 0.024 -7.389 3.068 -5.779 ML 100 98 6 103 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 16 39 u a - - MP 105 104 6 109 6 2 2 36 54 -10.986 -10.925 -0.006 -9.701 -9.981 -10.376 -5.041 -4.926 0.355 -1.038 0.466 -5.900 2.255 -4.824 -5.024 0.393 -5.539 -2.758 2.360 -5.270 0.289 -3.877 ML 106 104 6 109 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 17 38 u a - - MP 111 110 6 115 6 2 2 34 52 -10.986 -10.925 -0.079 -9.701 -4.305 -10.376 -5.529 -5.147 -5.505 0.970 -4.493 -6.306 1.317 -5.114 -5.415 1.679 -5.900 -2.758 2.940 -5.688 -1.983 -4.156 ML 112 110 6 115 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 18 37 g c - - MP 117 116 6 121 6 2 2 32 50 -10.912 -10.851 -0.006 -9.628 -9.908 -10.303 -5.064 -3.741 -4.897 1.746 -5.924 -5.509 -1.050 -5.549 -5.308 2.810 -5.571 0.784 0.739 -4.767 0.493 -3.859 ML 118 116 6 121 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 31 49 -8.623 -7.352 -0.354 -7.330 -2.464 -5.544 -1.373 -2.560 1.671 -1.945 D 120 116 6 121 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 19 36 u a - - MP 123 122 6 127 6 2 2 30 48 -10.986 -10.925 -0.006 -9.701 -9.981 -10.376 -5.537 -4.355 -5.481 1.368 -6.320 -6.343 -1.682 -5.928 -1.527 2.097 -6.057 1.773 2.253 -5.548 -3.657 -4.387 ML 124 122 6 127 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 20 35 c g - - MP 129 128 6 133 6 2 2 28 46 -10.986 -10.925 -0.006 -9.701 -9.981 -10.376 -5.114 -4.834 -5.146 1.262 -4.234 -5.984 2.438 -4.832 -5.062 1.016 -5.577 1.038 1.794 -5.309 -1.753 -3.848 ML 130 128 6 133 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 21 34 U A - - MP 135 134 6 139 6 2 2 26 44 -10.986 -10.925 -0.006 -9.701 -9.981 -10.376 -6.178 -5.971 -6.036 -1.855 -4.764 -6.669 1.929 -5.496 -5.956 0.890 -6.372 -3.629 3.109 -6.296 0.213 -4.698 ML 136 134 6 139 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 22 33 G C - - MP 141 140 6 145 4 2 2 24 42 -9.950 -10.157 -0.007 -8.571 -8.820 -5.555 -10.715 -2.988 -10.404 -6.748 -4.809 -10.327 -6.915 3.969 -7.119 -3.469 -5.174 -7.201 -7.224 -9.642 ML 142 140 6 145 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 23 - A - - - ML 147 146 6 149 3 1 1 21 40 -10.873 -0.003 -9.527 1.988 -6.953 -6.293 -6.468 D 148 146 6 149 3 0 0 22 40 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 24 - A - - - ML 150 149 3 152 3 1 1 20 39 -10.873 -0.003 -9.527 1.125 -3.938 -4.246 0.766 D 151 149 3 152 3 0 0 21 39 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 25 - A - - - ML 153 152 3 155 3 1 1 19 37 -10.873 -0.003 -9.527 1.640 -0.383 -4.343 -3.908 D 154 152 3 155 3 0 0 20 38 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 26 - U - - - ML 156 155 3 158 3 1 1 18 36 -10.873 -0.003 -9.527 -6.341 -5.761 -7.230 1.986 D 157 155 3 158 3 0 0 19 37 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 27 - A - - - ML 159 158 3 161 3 1 1 17 35 -10.873 -0.003 -9.527 1.988 -6.953 -6.293 -6.468 D 160 158 3 161 3 0 0 18 36 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - U - - - ML 162 161 3 164 3 1 1 15 34 -10.873 -0.003 -9.527 -6.341 -5.761 -7.230 1.986 D 163 161 3 164 3 0 0 17 35 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - U - - - ML 165 164 3 167 3 1 1 14 33 -10.873 -0.003 -9.527 -6.341 -5.761 -7.230 1.986 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 30 - G - - - ML 168 167 3 170 3 1 1 13 31 -10.873 -0.003 -9.527 -5.578 -7.295 1.986 -6.329 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 31 - U - - - ML 171 170 3 173 3 1 1 11 29 -10.873 -0.003 -9.527 -6.341 -5.761 -7.230 1.986 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 32 - C - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 -6.238 1.983 -6.688 -5.338 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Lacto-rpoB ACC RF01709 DESC Lacto-rpoB RNA LENG 58 MAXL 118 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 22:46:51 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01709/CM NSEQ 31 EFFN 29.073853 CKSUM 3091167499 STATS LOCAL MSV -8.0602 0.72462 STATS LOCAL VITERBI -8.5412 0.72462 STATS LOCAL FORWARD -4.0881 0.72462 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15151 1.75366 1.56457 1.19891 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 0.00000 * 1 0.51048 3.77229 1.54869 1.80626 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 2 1.51297 3.47651 2.17497 0.45379 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 3 1.78099 2.51335 2.72776 0.37809 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 4 4.30390 4.24253 1.45347 0.30333 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 5 2.17026 4.16768 0.27164 2.22345 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 6 1.20662 4.23471 4.69143 0.38989 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 7 2.12778 0.31061 2.89300 2.38070 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 8 0.95797 3.62278 0.65955 2.62363 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.17963 2.21238 2.90075 0.05416 2.94270 1.09861 0.40547 9 1.85389 1.71778 2.35816 0.56332 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.05851 5.75177 2.92526 1.46634 0.26236 3.00835 0.05063 10 1.18628 1.35138 1.91926 1.24117 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.00671 5.69997 5.69997 1.46634 0.26236 3.58741 0.02806 11 1.53165 1.60878 1.66674 0.92931 12 u - - - 1.38629 1.38629 1.38629 1.38629 0.00671 5.69997 5.69997 1.46634 0.26236 0.05693 2.89426 12 1.15330 3.39049 0.68414 1.92283 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 13 0.90148 2.09873 1.68184 1.25390 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 14 2.21815 1.22418 4.95492 0.52739 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 15 2.17608 0.94306 2.38685 0.90347 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 16 2.06415 1.84864 1.55292 0.68519 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.06726 5.80514 2.78004 1.46634 0.26236 1.09861 0.40547 17 1.51902 3.43887 0.60126 1.60519 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.00642 5.74430 5.74430 1.46634 0.26236 0.09268 2.42463 18 1.79294 3.94524 0.68679 1.16798 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 19 1.85678 1.06245 1.35263 1.42855 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 20 3.97359 1.42762 2.10552 0.47879 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 21 4.63116 5.71010 0.01651 5.70865 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 22 0.00739 6.29920 5.83526 5.95208 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 23 0.60305 4.25426 4.48227 0.85015 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 24 0.24811 1.64393 4.48733 4.18272 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 25 5.92117 5.50197 6.54683 0.00823 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 26 0.00739 6.29920 5.83526 5.95208 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 27 5.92117 5.50197 6.54683 0.00823 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 28 5.92117 5.50197 6.54683 0.00823 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 29 5.32975 6.52616 0.00923 5.85148 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 30 5.92117 5.50197 6.54683 0.00823 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 31 5.79929 0.01098 6.11149 5.17235 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 32 5.60581 0.02160 5.55542 4.28151 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 33 0.60157 2.13730 1.17252 3.70937 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 34 1.49630 2.03940 1.02382 1.24926 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 35 1.11777 1.31880 3.69350 0.96587 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 36 2.22704 0.85807 1.84462 1.17090 37 c - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 37 0.71262 1.58853 1.77555 1.99490 38 a - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 38 0.87896 2.46700 0.78177 3.16172 39 g - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 39 2.72756 5.07430 0.20113 2.20223 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.08385 2.55858 5.80514 0.07608 2.61380 1.09861 0.40547 40 1.27292 1.40342 1.43509 1.44334 42 a - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 41 1.84101 1.01552 2.58718 0.90659 43 u - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 42 1.71105 3.43730 1.74968 0.48883 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 43 1.57851 1.66514 2.01761 0.75166 45 u - - - 1.38629 1.38629 1.38629 1.38629 0.23302 1.87811 2.90075 0.30733 1.32956 1.09861 0.40547 44 0.71767 3.07008 1.43978 1.47527 48 a - - > 1.38629 1.38629 1.38629 1.38629 0.00637 5.75177 5.75177 1.46634 0.26236 0.10397 2.31521 45 3.74756 0.76951 1.90076 1.01134 49 c - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 46 0.00739 6.29920 5.83526 5.95208 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 47 1.14330 3.57385 0.83549 1.51630 51 g - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 48 0.80098 0.91785 2.11874 3.45616 52 a - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 49 0.20446 2.21595 2.82376 4.10549 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 50 1.56185 5.05810 0.25461 4.74711 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 51 1.24337 1.77251 2.10518 0.86783 55 u - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 52 1.45544 1.33760 2.50383 0.86166 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 53 0.28310 2.83217 1.74681 4.31703 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 54 0.07634 2.89265 4.81530 4.60847 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 55 0.19547 1.88477 4.50879 4.22180 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 56 0.87206 3.28433 2.08597 0.86688 60 u - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 57 1.00780 0.62786 4.22457 2.44629 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 58 0.33314 1.87363 4.11885 2.17596 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.00303 5.80212 * 1.46634 0.26236 0.00000 * //