INFERNAL1/a [1.1.4 | Dec 2020] NAME Lacto-rpoB ACC RF01709 DESC Lacto-rpoB RNA STATES 178 NODES 48 CLEN 58 W 74 ALPH RNA RF no CONS yes MAP yes DATE Fri Apr 4 14:50:56 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 31 EFFN 27.999146 CKSUM 3091167499 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.70 NC 39.00 EFP7GF -12.9659 0.72489 ECMLC 0.55335 -5.94719 5.23248 1600000 583237 0.002057 ECMGC 0.41335 -16.54319 -1.72212 1600000 183094 0.002185 ECMLI 0.54803 -3.83682 6.72189 1600000 391052 0.003069 ECMGI 0.40841 -14.58028 -0.14857 1600000 145156 0.002756 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 94 -10.019 -10.226 -0.006 -8.640 IL 1 1 2 1 4 1 18 78 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 19 74 95 -10.941 -0.003 -9.595 1.195 -3.335 -0.084 -0.581 D 4 2 3 5 3 0 10 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 18 73 93 -10.941 -0.003 -9.595 -0.165 -2.939 -1.087 1.326 D 7 5 3 8 3 0 9 72 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 17 72 92 -10.941 -0.003 -9.595 -0.491 -1.662 -1.967 1.442 D 10 8 3 11 3 0 9 71 91 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 15 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 16 71 91 -10.941 -0.003 -9.595 -4.146 -4.082 0.005 1.527 D 13 11 3 14 3 0 8 70 90 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 14 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 15 70 90 -10.941 -0.003 -9.595 -0.936 -3.911 1.566 -1.154 D 16 14 3 17 3 0 7 69 89 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 13 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 15 69 89 -10.941 -0.003 -9.595 0.284 -4.037 -4.674 1.423 D 19 17 3 20 3 0 6 68 88 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 12 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 14 68 88 -11.247 -0.003 -9.565 -1.017 1.524 -1.937 -1.438 D 22 20 3 23 3 0 5 67 87 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 10 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 62 - A - - MR 24 23 3 26 3 1 13 67 87 -11.247 -0.003 -9.565 1.528 -0.698 -3.912 -1.204 D 25 23 3 26 3 0 3 66 86 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 9 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 61 - C - - MR 27 26 3 29 3 1 12 66 86 -11.247 -0.003 -9.565 0.552 1.064 -3.982 -1.398 D 28 26 3 29 3 0 2 65 85 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 8 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 60 - a - - MR 30 29 3 32 3 1 11 65 85 -11.247 -0.003 -9.565 0.781 -2.696 -0.966 0.692 D 31 29 3 32 3 0 2 64 84 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 59 - A - - MR 33 32 3 35 3 1 10 64 84 -11.247 -0.003 -9.565 1.709 -0.682 -4.444 -4.030 D 34 32 3 35 3 0 1 63 83 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 6 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 58 - A - - MR 36 35 3 38 3 1 10 63 83 -11.247 -0.003 -9.565 1.895 -2.259 -4.923 -4.636 D 37 35 3 38 3 0 0 62 82 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 5 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 57 - A - - MR 39 38 3 41 3 1 9 62 82 -11.247 -0.003 -9.565 1.589 -2.151 -0.489 -4.189 D 40 38 3 41 3 0 0 61 81 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 5 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 56 - u - - MR 42 41 3 44 3 1 8 61 81 -11.247 -0.003 -9.565 -0.041 0.108 -1.642 0.705 D 43 41 3 44 3 0 0 60 80 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 4 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - u - - MR 45 44 3 47 3 1 7 60 80 -11.247 -0.003 -9.565 0.201 -0.485 -0.956 0.697 D 46 44 3 47 3 0 0 59 79 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - G - - MR 48 47 3 50 3 1 7 59 79 -11.247 -0.003 -9.565 -0.242 -5.224 1.628 -4.778 D 49 47 3 50 3 0 0 58 78 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - A - - MR 51 50 3 53 3 1 6 58 78 -11.247 -0.003 -9.565 1.696 -1.116 -2.130 -3.854 D 52 50 3 53 3 0 0 57 77 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 2 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 52 - a - - MR 54 53 3 56 3 1 5 57 77 -11.247 -0.003 -9.565 0.873 0.611 -0.974 -2.929 D 55 53 3 56 3 0 0 56 76 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 51 - g - - MR 57 56 3 59 3 1 4 56 76 -11.247 -0.003 -9.565 0.415 -3.062 0.728 -0.168 D 58 56 3 59 3 0 0 55 75 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 50 - A - - MR 60 59 3 62 5 1 3 55 75 -9.901 -0.006 -9.716 -9.928 -10.820 1.989 -7.030 -6.365 -6.536 D 61 59 3 62 5 0 0 54 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 8 49 g c - - MP 63 62 3 67 6 2 2 54 74 -3.366 -10.982 -0.308 -4.275 -10.039 -4.560 -5.321 -3.966 0.363 2.331 -6.305 -5.802 -1.387 -5.814 -5.548 2.827 -5.821 -0.144 -1.648 -5.049 -0.481 -4.108 ML 64 62 3 67 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 73 -4.788 -5.051 -0.134 -6.706 -7.482 -7.143 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 10 48 u a - - MP 69 68 6 73 4 2 2 52 72 -9.851 -3.019 -0.284 -4.204 -4.659 -4.566 -4.740 0.981 -3.963 -5.582 1.576 -4.542 -4.681 -0.573 -5.215 -0.344 2.912 -4.907 -0.208 -0.239 ML 70 68 6 73 4 1 1 53 73 -5.301 -0.558 -2.050 -4.213 1.693 -2.257 -1.901 -1.789 MR 71 68 6 73 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 49 69 -6.385 -6.066 -4.082 -0.130 IL 73 73 5 73 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 52 73 -1.319 -0.761 -6.768 0.000 0.000 0.000 0.000 [ MATL 23 ] 11 - a - - - ML 75 74 6 77 3 1 2 46 65 -10.798 -0.003 -9.452 0.332 -0.028 -0.764 0.229 D 76 74 6 77 3 0 0 44 63 -9.154 -4.667 -0.061 IL 77 77 3 77 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 12 - u - - - ML 78 77 3 80 3 1 1 45 64 -11.105 -0.003 -9.423 -0.110 -0.391 -0.472 0.669 D 79 77 3 80 3 0 0 44 63 -7.997 -0.115 -3.780 IL 80 80 3 80 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 45 - u - - MR 81 80 3 83 3 1 1 44 63 -11.247 -0.003 -9.565 -0.333 -0.421 -0.943 0.955 D 82 80 3 83 3 0 0 43 61 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 44 - U - - MR 84 83 3 86 5 1 1 43 62 -9.901 -0.006 -9.716 -9.928 -10.820 -0.543 -2.958 -0.558 1.325 D 85 83 3 86 5 0 0 42 60 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 13 43 g c - - MP 87 86 3 91 6 2 2 42 61 -11.043 -10.982 -0.005 -9.759 -10.039 -10.434 0.491 -3.746 -4.717 1.784 -5.470 -5.373 -1.027 -5.311 -5.054 2.481 -5.389 1.307 0.107 -4.637 -0.632 -0.728 ML 88 86 3 91 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 14 42 a u - - MP 93 92 6 97 6 2 2 40 59 -11.043 -3.801 -0.113 -9.759 -10.039 -10.434 0.849 0.927 -3.047 1.426 -3.018 -3.894 0.797 -3.381 -3.116 1.042 -3.683 -0.313 1.172 -3.183 0.880 -2.294 ML 94 92 6 97 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 39 58 -3.800 -0.170 -7.311 -5.479 -6.585 0.000 0.000 0.000 0.000 [ MATP 29 ] 15 40 U G - - MP 99 98 6 103 6 2 2 38 56 -11.043 -10.982 -0.005 -9.759 -10.039 -10.434 -7.533 -7.644 -6.992 0.826 -5.422 -7.235 2.217 -6.300 -7.051 -3.635 -7.240 -5.717 0.108 -7.449 3.053 -5.839 ML 100 98 6 103 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 16 39 u a - - MP 105 104 6 109 6 2 2 36 54 -11.043 -10.982 -0.005 -9.759 -10.039 -10.434 -5.174 -5.048 0.491 -1.140 0.540 -6.016 2.247 -4.926 -5.144 0.321 -5.654 -2.863 2.300 -5.397 0.472 -3.988 ML 106 104 6 109 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 17 38 u a - - MP 111 110 6 115 6 2 2 34 52 -11.043 -10.982 -0.076 -9.759 -4.372 -10.434 -5.596 -5.203 -5.569 0.906 -4.556 -6.367 1.329 -5.176 -5.480 1.753 -5.964 -2.810 2.925 -5.750 -2.042 -4.217 ML 112 110 6 115 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 18 37 g c - - MP 117 116 6 121 6 2 2 32 50 -10.973 -10.912 -0.006 -9.689 -9.969 -10.364 -5.119 -3.800 -4.954 1.797 -5.972 -5.569 -1.103 -5.602 -5.362 2.748 -5.628 0.861 0.813 -4.827 0.519 -3.916 ML 118 116 6 121 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 31 49 -8.616 -7.345 -0.356 -7.323 -2.457 -5.537 -1.363 -2.547 1.668 -1.933 D 120 116 6 121 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 19 36 u a - - MP 123 122 6 127 6 2 2 30 48 -11.043 -10.982 -0.005 -9.759 -10.039 -10.434 -5.609 -4.398 -5.542 1.406 -6.430 -6.392 -1.753 -6.006 -1.602 2.129 -6.123 1.702 2.266 -5.598 -3.733 -4.447 ML 124 122 6 127 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 20 35 c g - - MP 129 128 6 133 6 2 2 28 46 -11.043 -10.982 -0.005 -9.759 -10.039 -10.434 -5.176 -4.878 -5.205 1.304 -4.301 -6.041 2.408 -4.896 -5.125 1.084 -5.637 1.061 1.769 -5.364 -1.817 -3.907 ML 130 128 6 133 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 21 34 U A - - MP 135 134 6 139 6 2 2 26 44 -11.043 -10.982 -0.005 -9.759 -10.039 -10.434 -6.245 -6.038 -6.103 -1.920 -4.828 -6.734 1.934 -5.560 -6.022 0.968 -6.438 -3.695 3.103 -6.363 0.143 -4.764 ML 136 134 6 139 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 22 33 G C - - MP 141 140 6 145 4 2 2 24 42 -10.019 -10.226 -0.006 -8.640 -8.883 -5.612 -10.800 -3.048 -10.471 -6.803 -4.870 -10.403 -6.973 3.970 -7.176 -3.527 -5.235 -7.258 -7.287 -9.732 ML 142 140 6 145 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 23 - A - - - ML 147 146 6 149 3 1 1 21 40 -10.941 -0.003 -9.595 1.989 -7.030 -6.365 -6.536 D 148 146 6 149 3 0 0 22 40 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 24 - A - - - ML 150 149 3 152 3 1 1 20 39 -10.941 -0.003 -9.595 1.101 -4.050 -4.375 0.804 D 151 149 3 152 3 0 0 21 39 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 25 - A - - - ML 153 152 3 155 3 1 1 19 37 -10.941 -0.003 -9.595 1.627 -0.321 -4.416 -3.974 D 154 152 3 155 3 0 0 20 38 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 26 - U - - - ML 156 155 3 158 3 1 1 18 36 -10.941 -0.003 -9.595 -6.456 -5.862 -7.353 1.987 D 157 155 3 158 3 0 0 19 37 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 27 - A - - - ML 159 158 3 161 3 1 1 17 35 -10.941 -0.003 -9.595 1.989 -7.030 -6.365 -6.536 D 160 158 3 161 3 0 0 18 36 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - U - - - ML 162 161 3 164 3 1 1 15 34 -10.941 -0.003 -9.595 -6.456 -5.862 -7.353 1.987 D 163 161 3 164 3 0 0 17 35 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - U - - - ML 165 164 3 167 3 1 1 14 33 -10.941 -0.003 -9.595 -6.456 -5.862 -7.353 1.987 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 30 - G - - - ML 168 167 3 170 3 1 1 13 31 -10.941 -0.003 -9.595 -5.642 -7.364 1.986 -6.394 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 31 - U - - - ML 171 170 3 173 3 1 1 11 29 -10.941 -0.003 -9.595 -6.456 -5.862 -7.353 1.987 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 32 - C - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 -6.311 1.984 -6.762 -5.409 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Lacto-rpoB ACC RF01709 DESC Lacto-rpoB RNA LENG 58 MAXL 118 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Apr 4 14:50:56 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 31 EFFN 29.081421 CKSUM 3091167499 STATS LOCAL MSV -8.0949 0.72489 STATS LOCAL VITERBI -8.5759 0.72489 STATS LOCAL FORWARD -4.0734 0.72489 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.14858 1.75542 1.56379 1.20151 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 0.00000 * 1 0.55587 3.74233 1.44285 1.79292 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 2 1.50222 3.46030 2.14237 0.46431 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 3 1.72782 2.54674 2.75819 0.38480 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 4 4.31020 4.26010 1.37822 0.32792 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 5 2.03760 4.12973 0.29942 2.18635 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 6 1.18654 4.23569 4.68535 0.39895 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 7 2.09334 0.32776 2.73091 2.39659 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 8 0.91010 3.64012 0.69047 2.66030 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.18473 2.14898 2.95514 0.05089 3.00351 1.09861 0.40547 9 1.77834 1.68816 2.38218 0.59082 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.05534 5.75483 2.98245 1.46634 0.26236 2.95947 0.05324 10 1.15567 1.40431 1.91804 1.22854 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.00667 5.70617 5.70617 1.46634 0.26236 3.53469 0.02960 11 1.46531 1.65803 1.71380 0.92055 12 u - - - 1.38629 1.38629 1.38629 1.38629 0.00667 5.70617 5.70617 1.46634 0.26236 0.06011 2.84154 12 1.16706 3.37801 0.67961 1.91198 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 13 0.89271 2.08005 1.65819 1.29081 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 14 2.18408 1.22918 4.91660 0.53177 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 15 2.12138 0.93924 2.42227 0.91507 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 16 2.10600 1.82844 1.50575 0.70166 17 u - - < 1.38629 1.38629 1.38629 1.38629 0.06373 5.80514 2.83479 1.46634 0.26236 1.09861 0.40547 17 1.48757 3.43658 0.62510 1.57651 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.00640 5.74780 5.74780 1.46634 0.26236 0.09765 2.37484 18 1.76423 3.90301 0.69842 1.16754 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 19 1.82996 1.08577 1.32358 1.44496 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 20 3.95197 1.41950 2.05106 0.49372 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 21 4.63146 5.71047 0.01650 5.70909 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 22 0.00739 6.29947 5.83552 5.95232 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 23 0.62173 4.25350 4.48570 0.82667 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 24 0.25793 1.60556 4.48686 4.17903 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 25 5.92159 5.50233 6.54727 0.00823 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 26 0.00739 6.29947 5.83552 5.95232 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 27 5.92159 5.50233 6.54727 0.00823 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 28 5.92159 5.50233 6.54727 0.00823 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 29 5.32998 6.52641 0.00923 5.85171 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 30 5.92159 5.50233 6.54727 0.00823 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 31 5.79956 0.01098 6.11175 5.17261 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 32 5.60809 0.02157 5.55696 4.28216 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 33 0.61209 2.08206 1.17733 3.68842 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 34 1.51348 1.98885 1.04635 1.23173 35 g - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 35 1.12221 1.28847 3.65515 0.98647 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 36 2.17866 0.89722 1.85697 1.13022 37 c - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 37 0.72969 1.54009 1.75645 2.03313 38 a - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 38 0.90730 2.50401 0.74900 3.17506 39 g - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 39 2.65932 5.03721 0.21180 2.16817 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.09420 2.44319 5.80513 0.06795 2.72278 1.09861 0.40547 40 1.31341 1.34927 1.44783 1.44143 42 a - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 41 1.83939 1.03107 2.60636 0.89000 43 u - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 42 1.76689 3.47327 1.77235 0.46491 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 43 1.62088 1.67913 2.04273 0.72141 45 u - - - 1.38629 1.38629 1.38629 1.38629 0.25115 1.77183 2.95514 0.30960 1.32329 1.09861 0.40547 44 0.73044 3.06000 1.41525 1.47599 48 a - - > 1.38629 1.38629 1.38629 1.38629 0.00636 5.75483 5.75483 1.46634 0.26236 0.10947 2.26632 45 3.76385 0.79945 1.89393 0.97617 49 c - - > 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 46 0.00739 6.29947 5.83552 5.95232 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 47 1.09780 3.54784 0.87864 1.50391 51 g - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 48 0.77975 0.95857 2.06340 3.47323 52 a - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 49 0.20956 2.15817 2.86718 4.09465 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 50 1.55282 5.05485 0.25712 4.74509 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 51 1.24768 1.72312 2.05271 0.90156 55 u - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 52 1.41616 1.31013 2.53382 0.89596 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 53 0.28430 2.88060 1.72456 4.33467 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 54 0.07237 2.95227 4.83895 4.63797 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 55 0.20107 1.85576 4.50500 4.21600 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 56 0.84257 3.28926 2.05971 0.90479 60 a - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 57 1.00237 0.64589 4.18893 2.36838 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.00604 5.80514 5.80514 1.46634 0.26236 1.09861 0.40547 58 0.32601 1.86932 4.13877 2.22537 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.00303 5.80212 * 1.46634 0.26236 0.00000 * //