INFERNAL1/a [1.1.4 | Dec 2020] NAME Cyano-1 ACC RF01701 DESC Cyano-1 RNA STATES 211 NODES 57 CLEN 69 W 138 ALPH RNA RF no CONS yes MAP yes DATE Fri Apr 4 15:41:26 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 265 EFFN 11.188583 CKSUM 1107633353 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.10 NC 40.90 EFP7GF -17.0868 0.71881 ECMLC 0.58298 -8.72471 1.70521 1600000 524678 0.002287 ECMGC 0.43140 -16.15570 -3.46008 1600000 95635 0.004183 ECMLI 0.54409 -6.50388 3.63697 1600000 298824 0.004016 ECMGI 0.45662 -12.21576 -0.99233 1600000 67260 0.005947 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 138 226 -8.808 -9.015 -0.038 -5.499 IL 1 1 2 1 4 1 24 140 228 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 140 228 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 2 23 138 226 -9.724 -0.006 -8.378 0.352 -0.849 -0.319 0.451 D 4 2 3 5 3 0 19 136 224 -6.767 -2.280 -0.349 IL 5 5 3 5 3 1 23 139 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 2 22 137 225 -9.724 -0.006 -8.378 0.373 -0.702 -0.682 0.553 D 7 5 3 8 3 0 19 135 224 -6.767 -0.881 -1.159 IL 8 8 3 8 3 1 22 138 226 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - g - - - ML 9 8 3 11 3 1 22 136 224 -9.747 -0.006 -8.401 0.080 -1.044 0.638 -0.150 D 10 8 3 11 3 0 18 134 222 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 21 137 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 21 135 223 -9.747 -0.006 -8.401 -0.264 -0.779 -0.816 1.012 D 13 11 3 14 3 0 17 133 221 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 20 136 224 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 20 134 222 -9.747 -0.006 -8.401 -1.018 -1.933 1.408 -0.760 D 16 14 3 17 3 0 16 132 220 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 20 135 223 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 19 133 221 -9.747 -0.011 -7.245 -0.965 -1.474 -2.318 1.550 D 19 17 3 20 3 0 16 131 219 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 19 134 222 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 18 132 221 -9.742 -0.006 -8.396 -3.944 -5.260 1.932 -3.417 D 22 20 3 23 3 0 15 130 219 -6.332 -1.388 -0.724 IL 23 23 3 23 3 1 18 133 221 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 17 131 220 -9.747 -0.298 -2.429 -2.517 -2.449 -3.128 1.819 D 25 23 3 26 3 0 15 130 218 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 17 132 220 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 16 130 219 -3.157 -0.177 -8.110 -2.001 -3.858 1.823 -2.805 D 28 26 3 29 3 0 14 129 217 -8.943 -0.154 -3.334 IL 29 29 3 29 3 1 16 130 219 -2.227 -0.408 -4.927 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - - - ML 30 29 3 32 3 1 15 129 218 -9.747 -0.006 -8.401 1.970 -5.497 -4.926 -5.178 D 31 29 3 32 3 0 11 127 215 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 15 130 218 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - G - - - ML 33 32 3 35 3 1 14 128 217 -9.747 -0.006 -8.401 -2.330 -4.258 1.857 -2.991 D 34 32 3 35 3 0 11 126 214 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 14 129 217 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - G - - - ML 36 35 3 38 3 1 13 127 216 -9.747 -0.006 -8.401 -2.576 -4.519 1.882 -3.281 D 37 35 3 38 3 0 10 125 213 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 13 128 216 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - A - - - ML 39 38 3 41 3 1 12 126 215 -9.747 -0.048 -4.984 1.843 -3.590 -2.397 -2.832 D 40 38 3 41 3 0 9 124 213 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 12 127 215 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - G - - - ML 42 41 3 44 3 1 11 125 214 -10.028 -0.136 -3.488 -1.039 -3.743 1.729 -3.027 D 43 41 3 44 3 0 9 124 212 -6.257 -0.625 -1.563 IL 44 44 3 44 3 1 12 126 214 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 90 - A - - MR 45 44 3 47 3 1 11 124 213 -9.931 -0.006 -8.249 1.074 -1.176 -1.275 0.056 D 46 44 3 47 3 0 7 122 211 -8.194 -1.367 -0.716 IR 47 47 3 47 3 1 11 125 213 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 89 - a - - MR 48 47 3 50 3 1 10 123 212 -9.989 -0.006 -8.307 0.774 -0.604 -0.524 -0.094 D 49 47 3 50 3 0 7 121 210 -7.698 -1.464 -0.660 IR 50 50 3 50 3 1 10 124 212 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 88 - a - - MR 51 50 3 53 3 1 9 122 211 -10.020 -0.006 -8.338 0.612 -0.839 -0.397 0.206 D 52 50 3 53 3 0 6 121 209 -7.328 -0.613 -1.557 IR 53 53 3 53 3 1 9 123 211 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 87 - u - - MR 54 53 3 56 5 1 8 121 210 -8.740 -0.142 -4.638 -7.604 -4.435 0.120 -0.209 -0.857 0.581 D 55 53 3 56 5 0 5 119 208 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 8 121 210 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 86 u a - - MP 57 56 3 61 6 2 12 121 209 -1.971 -9.956 -0.438 -8.732 -9.012 -9.407 -1.062 -0.601 -2.134 1.166 -1.972 -2.307 1.054 -0.981 -2.172 0.754 -2.720 0.606 1.313 0.332 -0.305 0.280 ML 58 56 3 61 6 1 6 120 209 -1.740 -7.391 -1.457 -1.800 -7.241 -4.771 0.391 0.004 -0.706 0.101 MR 59 56 3 61 6 1 6 103 191 -7.056 -5.785 -1.493 -5.763 -0.897 -3.977 0.262 -0.365 -0.311 0.285 D 60 56 3 61 6 0 3 91 180 -10.135 -8.834 -0.812 -5.313 -5.330 -1.406 IL 61 61 5 61 6 1 12 125 214 -0.301 -7.810 -2.471 -9.465 -10.242 -9.902 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 7 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 31 85 a u - - MP 63 62 6 67 6 2 11 65 84 -10.110 -10.049 -0.010 -8.826 -9.105 -9.501 -3.262 -1.542 -4.250 2.913 -5.158 -4.962 -0.536 -4.824 -4.554 2.345 -4.892 -0.169 -0.397 -4.204 -2.478 -2.785 ML 64 62 6 67 6 1 5 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 5 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 2 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 6 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 7 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 32 84 g c - - MP 69 68 6 73 6 2 10 63 82 -10.110 -10.049 -0.010 -8.826 -9.105 -9.501 -4.180 -3.025 -3.419 2.538 -4.836 -4.704 0.427 -3.719 -4.421 2.613 -4.731 -0.061 -0.294 -3.968 -1.902 -3.055 ML 70 68 6 73 6 1 5 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 5 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 1 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 6 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 6 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 33 83 u a - - MP 75 74 6 79 6 2 8 61 80 -10.110 -10.049 -0.010 -8.826 -9.105 -9.501 -2.592 -2.851 -2.898 2.050 -2.277 -3.747 1.561 -2.561 -2.937 0.827 -3.498 -0.458 2.061 -3.043 -0.454 -1.874 ML 76 74 6 79 6 1 5 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 4 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 1 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 5 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 5 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 34 82 u a - - MP 81 80 6 85 6 2 6 59 78 -10.110 -10.049 -0.010 -8.826 -9.105 -9.501 -2.314 -2.538 -2.575 1.350 -2.136 -3.112 1.436 -2.865 -2.635 1.381 -3.199 0.141 2.160 -2.390 -0.414 -1.569 ML 82 80 6 85 6 1 4 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 3 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 1 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 5 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 5 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 35 81 c g - - MP 87 86 6 91 4 2 4 57 76 -8.808 -9.015 -0.291 -2.488 -3.283 -3.311 -3.097 0.752 -1.978 -4.265 2.429 -2.798 -3.424 1.715 -3.973 -0.816 1.645 -3.569 -0.403 -2.438 ML 88 86 6 91 4 1 3 58 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 2 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 5 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 5 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 36 - a - - - ML 93 92 6 95 3 1 5 55 74 -9.480 -0.007 -8.135 0.433 -0.052 -0.935 0.216 D 94 92 6 95 3 0 0 52 72 -8.846 -2.280 -0.337 IL 95 95 3 95 3 1 4 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - u - - - ML 96 95 3 98 3 1 4 54 73 -2.588 -0.350 -4.341 0.027 -0.295 -1.253 0.804 D 97 95 3 98 3 0 0 50 69 -7.492 -2.162 -0.375 IL 98 98 3 98 3 1 5 55 74 -1.399 -0.760 -5.039 0.000 0.000 0.000 0.000 [ MATR 27 ] - 80 - u - - MR 99 98 3 101 3 1 5 51 70 -9.803 -0.007 -8.121 0.089 -0.442 -1.089 0.791 D 100 98 3 101 3 0 0 49 68 -8.878 -2.973 -0.200 IR 101 101 3 101 3 1 4 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 79 - a - - MR 102 101 3 104 5 1 4 50 69 -8.503 -0.015 -8.318 -8.531 -9.422 0.388 -0.690 -0.195 0.260 D 103 101 3 104 5 0 0 49 68 -7.106 -0.176 -4.732 -6.163 -4.157 IR 104 104 3 104 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 40 78 u a - - MP 105 104 3 109 6 2 4 49 68 -10.110 -10.049 -0.010 -8.826 -9.105 -9.501 -1.934 -2.232 -2.379 1.009 -1.414 -1.548 1.915 -2.692 -2.439 0.717 -3.010 -0.932 2.170 -2.311 0.197 -1.501 ML 106 104 3 109 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 41 77 c g - - MP 111 110 6 115 4 2 2 47 65 -8.808 -9.015 -0.818 -1.222 -4.210 -4.048 -4.262 0.181 -2.958 -5.100 2.548 -3.284 -4.175 0.466 -4.700 -1.809 2.476 -4.435 0.058 -2.481 ML 112 110 6 115 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 48 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 47 66 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 50 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 42 - a - - - ML 117 116 6 119 3 1 1 45 63 -3.955 -0.194 -4.031 0.391 -0.307 -0.459 0.206 D 118 116 6 119 3 0 0 42 61 -10.000 -1.837 -0.476 IL 119 119 3 119 3 1 1 46 64 -1.812 -0.575 -4.512 0.000 0.000 0.000 0.000 [ MATL 32 ] 44 - a - - - ML 120 119 3 122 3 1 2 43 62 -9.165 -0.009 -7.819 0.728 -1.134 -1.189 0.536 D 121 119 3 122 3 0 0 41 59 -9.706 -5.219 -0.041 IL 122 122 3 122 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 45 - u - - - ML 123 122 3 125 3 1 1 42 61 -9.501 -0.119 -3.687 0.202 -0.072 -1.246 0.562 D 124 122 3 125 3 0 0 40 59 -8.514 -2.993 -0.198 IL 125 125 3 125 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 76 - u - - MR 126 125 3 128 3 1 2 41 60 -9.430 -0.009 -7.748 0.057 -0.684 -0.709 0.787 D 127 125 3 128 3 0 0 39 58 -9.822 -2.634 -0.255 IR 128 128 3 128 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 75 - u - - MR 129 128 3 131 3 1 2 40 59 -9.541 -0.008 -7.858 0.351 -0.758 -0.536 0.530 D 130 128 3 131 3 0 0 38 57 -9.621 -3.414 -0.144 IR 131 131 3 131 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 74 - u - - MR 132 131 3 134 5 1 1 39 58 -8.264 -0.017 -8.080 -8.292 -9.184 0.052 -1.203 -0.417 0.832 D 133 131 3 134 5 0 0 38 57 -7.784 -0.123 -5.410 -6.841 -4.479 IR 134 134 3 134 5 1 1 40 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 46 73 g c - - MP 135 134 3 139 6 2 2 38 57 -10.106 -10.046 -0.011 -8.822 -9.102 -9.497 -0.277 -2.109 -2.189 1.484 -2.191 -3.135 1.164 -2.643 -1.858 1.922 -2.130 -0.568 1.560 -2.423 -0.505 -1.387 ML 136 134 3 139 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 37 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 35 53 -9.166 -7.864 -3.661 -4.343 -2.982 -0.436 IL 139 139 5 139 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 38 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 47 72 g c - - MP 141 140 6 145 6 2 2 36 55 -10.106 -10.046 -0.011 -8.822 -9.102 -9.497 -2.603 -2.313 -3.299 0.752 -3.062 -3.426 1.981 -3.154 -3.432 2.725 -3.483 -0.923 0.550 -3.363 -1.073 -2.190 ML 142 140 6 145 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 35 54 -7.068 -5.797 -1.706 -5.776 -0.769 -3.989 0.583 -0.533 -0.235 -0.057 D 144 140 6 145 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 36 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 48 71 g c - - MP 147 146 6 151 4 2 2 34 53 -4.297 -9.877 -0.103 -5.899 -3.171 -0.672 -4.211 2.430 -5.244 -4.851 -0.448 -4.854 -4.594 2.834 -4.879 -0.552 -0.576 -4.104 -2.427 -2.432 ML 148 146 6 151 4 1 1 34 53 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 33 52 -4.277 -12.703 -0.340 -2.660 0.249 -0.078 -0.400 0.146 D 150 146 6 151 4 0 0 31 50 -12.737 -14.007 -2.036 -0.404 IL 151 151 5 151 4 1 1 34 53 -1.884 -5.297 -0.677 -3.675 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 70 - U - - MR 153 152 6 155 5 1 1 32 51 -4.808 -0.062 -8.549 -8.762 -9.653 -2.141 -1.730 -1.253 1.610 D 154 152 6 155 5 0 0 31 49 -5.443 -0.652 -3.069 -4.500 -2.495 IR 155 155 3 155 5 1 1 32 51 -2.778 -0.368 -6.289 -4.456 -5.562 0.000 0.000 0.000 0.000 [ MATP 41 ] 51 68 G C - - MP 156 155 3 160 6 2 2 31 50 -10.110 -10.049 -0.010 -8.826 -9.105 -9.501 -5.497 -2.721 -5.443 -0.307 -6.495 -5.352 -1.512 -6.075 -5.296 3.735 -5.534 -1.327 -0.650 -3.887 -3.559 -4.402 ML 157 155 3 160 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 52 67 U A - - MP 162 161 6 166 6 2 2 29 48 -10.110 -10.049 -0.010 -8.826 -9.105 -9.501 -6.688 -6.159 -6.317 -0.840 -5.059 -6.841 -0.744 -5.753 -6.243 -2.560 -6.554 -3.753 3.837 -6.921 -2.695 -4.848 ML 163 161 6 166 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 53 66 G C - - MP 168 167 6 172 4 2 2 27 46 -8.808 -9.015 -0.014 -7.429 -5.733 -4.562 -5.534 -1.018 -4.910 -5.796 2.343 -5.399 -5.467 3.219 -5.750 -2.246 -1.118 -5.550 -2.459 -4.392 ML 169 167 6 172 4 1 1 29 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 30 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 54 - G - - - ML 174 173 6 176 3 1 1 24 43 -9.747 -0.006 -8.401 -4.214 -5.651 1.953 -4.224 D 175 173 6 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 55 - A - - - ML 177 176 3 179 3 1 1 23 42 -9.747 -0.006 -8.401 1.934 -4.745 -3.328 -4.547 D 178 176 3 179 3 0 0 23 42 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 56 - A - - - ML 180 179 3 182 3 1 1 22 41 -9.747 -0.006 -8.401 1.944 -4.108 -4.366 -4.457 D 181 179 3 182 3 0 0 22 41 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 57 - A - - - ML 183 182 3 185 3 1 1 21 40 -9.747 -0.006 -8.401 1.970 -5.497 -4.926 -5.178 D 184 182 3 185 3 0 0 21 39 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - C - - - ML 186 185 3 188 3 1 1 20 38 -9.747 -0.006 -8.401 -5.021 1.960 -5.545 -4.111 D 187 185 3 188 3 0 0 20 38 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 59 - A - - - ML 189 188 3 191 3 1 1 19 37 -9.747 -0.006 -8.401 1.815 -3.354 -2.433 -2.327 D 190 188 3 191 3 0 0 19 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 60 - A - - - ML 192 191 3 194 3 1 1 17 36 -9.747 -0.006 -8.401 1.488 -0.522 -2.611 -1.578 D 193 191 3 194 3 0 0 18 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 61 - G - - - ML 195 194 3 197 3 1 1 16 35 -9.747 -0.006 -8.401 -4.437 -5.999 1.967 -5.170 D 196 194 3 197 3 0 0 17 35 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 62 - G - - - ML 198 197 3 200 3 1 1 15 33 -9.747 -0.006 -8.401 -4.437 -5.999 1.967 -5.170 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 63 - A - - - ML 201 200 3 203 3 1 1 14 32 -9.747 -0.006 -8.401 1.328 -0.285 -2.330 -1.088 D 202 200 3 203 3 0 0 15 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 64 - A - - - ML 204 203 3 206 3 1 1 12 30 -9.747 -0.006 -8.401 1.367 0.001 -2.518 -2.029 D 205 203 3 206 3 0 0 13 32 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 65 - A - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 1.970 -5.497 -4.926 -5.178 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Cyano-1 ACC RF01701 DESC Cyano-1 RNA LENG 69 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Apr 4 15:41:27 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 265 EFFN 66.043777 CKSUM 1107633353 STATS LOCAL MSV -8.2994 0.71881 STATS LOCAL VITERBI -9.0438 0.71881 STATS LOCAL FORWARD -4.0098 0.71881 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15591 1.75931 1.29763 1.42759 1.38629 1.38629 1.38629 1.38629 0.02165 6.34908 3.92892 1.46634 0.26236 0.00000 * 1 1.12121 2.22208 1.57725 1.02390 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.00357 6.33100 6.33100 1.46634 0.26236 2.58382 0.07849 2 1.09506 2.03828 1.96759 0.92777 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.00357 6.33100 6.33100 1.46634 0.26236 0.16366 1.89068 3 1.37250 2.35730 0.79513 1.60779 3 g - - : 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 4 1.75027 2.10831 2.04440 0.55274 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 5 2.44969 3.12735 0.31979 1.94111 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 6 2.16773 2.72349 3.56608 0.23363 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.00760 6.34908 5.14532 1.46634 0.26236 1.09861 0.40547 7 5.98883 7.14047 0.02485 3.85170 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.00352 6.34500 6.34500 1.46634 0.26236 0.47008 0.98070 8 3.80719 3.83386 4.10469 0.06223 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.23376 6.34908 1.57648 1.46634 0.26236 1.09861 0.40547 9 3.09236 5.69485 0.07481 3.75835 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.14159 2.04159 6.11973 0.03354 3.41173 0.01678 4.09623 10 0.00346 7.10093 6.58919 6.67945 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 11 3.33555 6.11444 0.06238 3.78691 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 12 3.53216 6.35174 0.04983 4.03877 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 13 0.06675 5.43066 3.29928 3.75998 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.03628 6.34908 3.38488 1.46634 0.26236 1.09861 0.40547 14 2.12407 5.65586 0.14520 4.41377 15 G - - : 1.38629 1.38629 1.38629 1.38629 0.05019 6.31642 3.05453 1.46634 0.26236 0.53847 0.87621 15 1.46527 1.97549 1.56478 0.86475 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.57334 0.83354 6.29151 1.78999 0.18268 0.05884 2.86221 16 0.38005 4.72535 1.29384 3.40849 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 17 0.68237 2.63174 0.94702 3.35999 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 18 1.00380 1.85358 2.07367 1.04663 33 a - - < 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 19 1.70976 1.91420 1.35508 0.88261 34 u - - < 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 20 2.45165 0.87731 1.27658 1.51888 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.21432 6.34908 1.65466 1.46634 0.26236 1.09861 0.40547 21 1.02293 1.33731 2.29743 1.28232 36 a - - - 1.38629 1.38629 1.38629 1.38629 0.00432 6.13909 6.13909 1.46634 0.26236 1.65886 0.21116 22 1.41975 1.61240 2.69560 0.71067 37 u - - - 1.38629 1.38629 1.38629 1.38629 0.22010 1.63224 6.18172 0.55911 0.84797 0.02219 3.81928 23 2.12123 1.12250 2.43632 0.76107 40 u - - < 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 24 3.25893 0.88867 2.88015 0.70473 41 u - - < 1.38629 1.38629 1.38629 1.38629 0.63105 6.34908 0.76310 1.46634 0.26236 1.09861 0.40547 25 1.06117 1.58387 1.72765 1.30538 42 a - - - 1.38629 1.38629 1.38629 1.38629 0.16500 2.52625 2.62908 0.07975 2.56847 1.27946 0.32599 26 0.73891 2.84443 2.76304 0.91355 44 a - - - 1.38629 1.38629 1.38629 1.38629 0.00559 5.88317 5.88317 1.46634 0.26236 5.37538 0.00464 27 1.23325 1.38434 2.83690 0.91740 45 u - - - 1.38629 1.38629 1.38629 1.38629 0.00559 5.88317 5.88317 1.46634 0.26236 0.01994 3.92516 28 1.24856 2.25377 0.98170 1.45497 46 g - - < 1.38629 1.38629 1.38629 1.38629 0.00352 6.34512 6.34512 1.46634 0.26236 1.66090 0.21068 29 2.56214 1.12933 0.63676 2.65064 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.00352 6.34512 6.34512 1.46634 0.26236 1.66090 0.21068 30 0.67428 4.38447 0.80048 3.54425 48 A - - < 1.38629 1.38629 1.38629 1.38629 0.05968 2.87917 6.34512 0.54730 0.86396 0.47793 0.96775 31 3.96763 6.15535 0.06371 3.20204 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 32 3.19356 4.72074 5.20657 0.05701 52 U - - < 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 33 5.57980 1.01004 0.46927 5.02616 53 G - - < 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 34 6.03075 7.22244 0.01228 4.70272 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 35 0.02082 6.68470 4.03354 6.41364 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 36 0.01315 4.66813 6.30874 6.28983 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 37 0.00346 7.10093 6.58919 6.67945 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 38 6.70022 0.00457 7.03320 6.01140 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 39 0.08161 5.24560 3.40083 3.22513 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 40 0.28813 1.64692 4.48642 3.06982 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 41 6.05876 7.28449 0.00441 6.58651 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 42 6.05876 7.28449 0.00441 6.58651 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 43 0.37938 1.48375 4.26372 2.59211 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 44 0.39437 1.21276 4.22202 4.27935 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 45 0.00346 7.10093 6.58919 6.67945 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 46 5.29349 0.47110 1.00607 5.29641 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 47 0.05874 5.54211 4.55711 3.15504 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 48 3.29906 0.05819 6.06034 4.05825 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.04832 3.20465 5.02079 0.08406 2.51795 1.09861 0.40547 49 3.99579 2.96080 2.14849 0.20682 70 U - - - 1.38629 1.38629 1.38629 1.38629 0.00352 6.34422 6.34422 1.46634 0.26236 0.42518 1.06032 50 3.72015 0.71733 4.18774 0.74964 71 c - - > 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 51 2.74464 0.63606 1.11676 2.53810 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.00748 6.34908 5.16612 1.46634 0.26236 1.09861 0.40547 52 1.19919 1.10834 2.02867 1.43993 73 c - - > 1.38629 1.38629 1.38629 1.38629 0.39921 6.34512 1.11660 1.46634 0.26236 1.66090 0.21068 53 1.43167 2.99662 1.65143 0.65516 74 U - - - 1.38629 1.38629 1.38629 1.38629 0.03985 5.95113 3.31135 1.46634 0.26236 5.25112 0.00526 54 1.10762 2.19512 1.81565 0.92740 75 u - - - 1.38629 1.38629 1.38629 1.38629 0.10066 5.91668 2.37444 1.46634 0.26236 5.31709 0.00492 55 1.42208 2.10361 1.99174 0.69252 76 U - - - 1.38629 1.38629 1.38629 1.38629 0.00594 5.82196 5.82196 1.46634 0.26236 0.00846 4.77632 56 0.84085 2.95926 0.76837 2.93696 77 g - - > 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 57 0.86944 2.18776 1.07313 2.06584 78 a - - > 1.38629 1.38629 1.38629 1.38629 0.19919 6.34908 1.72118 1.46634 0.26236 1.09861 0.40547 58 1.07913 2.03210 1.45021 1.22238 79 a - - - 1.38629 1.38629 1.38629 1.38629 0.02371 6.15415 3.84889 1.46634 0.26236 4.64727 0.00963 59 1.36465 1.76564 2.48019 0.71391 80 u - - - 1.38629 1.38629 1.38629 1.38629 0.00434 6.13479 6.13479 1.46634 0.26236 0.01781 4.03712 60 1.58648 1.38173 0.85349 2.13465 81 g - - > 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 61 0.95019 1.69435 1.81840 1.31928 82 a - - > 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 62 1.09964 2.47728 1.79558 0.87465 83 u - - > 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 63 3.68099 1.07496 2.52743 0.59126 84 U - - > 1.38629 1.38629 1.38629 1.38629 0.00350 6.34908 6.34908 1.46634 0.26236 1.09861 0.40547 64 3.43633 1.35054 4.58462 0.35881 85 U - - > 1.38629 1.38629 1.38629 1.38629 0.10533 6.34908 2.32052 1.46634 0.26236 1.09861 0.40547 65 1.69873 1.23091 2.38930 0.83618 86 u - - > 1.38629 1.38629 1.38629 1.38629 0.00388 6.24763 6.24763 1.46634 0.26236 0.03498 3.37040 66 1.35038 1.50676 2.15521 0.90795 87 u - - : 1.38629 1.38629 1.38629 1.38629 0.04270 6.34908 3.21753 1.46634 0.26236 1.09861 0.40547 67 0.86894 2.19755 1.65775 1.27667 88 a - - : 1.38629 1.38629 1.38629 1.38629 0.02840 6.31002 3.64249 1.46634 0.26236 3.21525 0.04097 68 0.72797 1.88639 1.78366 1.62216 89 a - - : 1.38629 1.38629 1.38629 1.38629 0.05031 6.28535 3.05327 1.46634 0.26236 3.64581 0.02645 69 0.50383 2.60946 2.68658 1.37004 90 A - - : 1.38629 1.38629 1.38629 1.38629 0.00196 6.23700 * 1.46634 0.26236 0.00000 * //