INFERNAL1/a [1.1.5 | Sep 2023] NAME Cyano-1 ACC RF01701 DESC Cyano-1 RNA STATES 211 NODES 57 CLEN 69 W 119 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 04:50:55 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01701/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 265 EFFN 11.738510 CKSUM 1107633353 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.00 NC 40.90 EFP7GF -17.0205 0.71880 ECMLC 0.54878 -9.03297 1.97058 1600000 503132 0.002385 ECMGC 0.44079 -15.66961 -3.20916 1600000 97134 0.004118 ECMLI 0.52874 -6.35517 3.97480 1600000 282635 0.004246 ECMGI 0.47937 -11.52314 -0.76670 1600000 69406 0.005763 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 119 184 -8.869 -9.076 -0.034 -5.684 IL 1 1 2 1 4 1 25 121 186 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 121 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 2 24 119 184 -9.787 -0.006 -8.441 0.303 -0.759 -0.342 0.472 D 4 2 3 5 3 0 20 117 182 -6.711 -2.224 -0.365 IL 5 5 3 5 3 1 24 120 185 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 2 23 118 183 -9.787 -0.006 -8.441 0.349 -0.699 -0.754 0.602 D 7 5 3 8 3 0 19 116 181 -6.711 -0.930 -1.103 IL 8 8 3 8 3 1 23 119 184 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - g - - - ML 9 8 3 11 3 2 22 117 182 -9.807 -0.006 -8.461 0.190 -1.115 0.637 -0.247 D 10 8 3 11 3 0 18 115 180 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 118 183 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 21 116 181 -9.807 -0.006 -8.461 -0.254 -0.946 -0.734 1.030 D 13 11 3 14 3 0 17 114 179 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 21 117 182 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 20 115 180 -9.807 -0.006 -8.461 -0.926 -1.864 1.354 -0.636 D 16 14 3 17 3 0 17 113 178 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 20 116 181 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 19 114 179 -9.807 -0.012 -7.075 -0.987 -1.410 -2.203 1.537 D 19 17 3 20 3 0 16 112 177 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 19 115 180 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 18 113 178 -9.800 -0.006 -8.454 -3.926 -5.215 1.925 -3.195 D 22 20 3 23 3 0 16 111 176 -6.378 -1.317 -0.770 IL 23 23 3 23 3 1 18 114 179 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 17 112 177 -9.807 -0.371 -2.149 -2.451 -2.417 -3.039 1.811 D 25 23 3 26 3 0 15 111 176 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 113 178 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 16 111 176 -3.138 -0.180 -8.098 -1.669 -3.539 1.774 -2.472 D 28 26 3 29 3 0 15 110 175 -9.241 -0.124 -3.633 IL 29 29 3 29 3 1 16 111 177 -2.229 -0.408 -4.929 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - A - - - ML 30 29 3 32 3 1 15 110 175 -9.807 -0.006 -8.461 1.972 -5.582 -5.008 -5.255 D 31 29 3 32 3 0 12 108 173 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 15 111 176 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 12 - G - - - ML 33 32 3 35 3 1 14 109 174 -9.807 -0.006 -8.461 -2.180 -4.112 1.838 -2.766 D 34 32 3 35 3 0 11 107 172 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 14 110 175 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - G - - - ML 36 35 3 38 3 1 13 108 173 -9.807 -0.006 -8.461 -2.453 -4.395 1.868 -3.076 D 37 35 3 38 3 0 10 106 171 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 13 109 174 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 14 - A - - - ML 39 38 3 41 3 1 12 107 172 -9.807 -0.057 -4.722 1.834 -3.541 -2.384 -2.664 D 40 38 3 41 3 0 10 105 171 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 13 108 173 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - G - - - ML 42 41 3 44 3 1 12 106 171 -10.077 -0.081 -4.221 -0.856 -3.627 1.692 -2.878 D 43 41 3 44 3 0 9 105 170 -6.392 -0.616 -1.576 IL 44 44 3 44 3 1 12 107 172 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 90 - A - - MR 45 44 3 47 3 1 11 105 170 -10.041 -0.006 -8.359 1.247 -1.448 -1.379 -0.192 D 46 44 3 47 3 0 8 104 169 -7.802 -0.953 -1.062 IR 47 47 3 47 3 1 11 106 171 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 89 - a - - MR 48 47 3 50 3 1 10 104 169 -10.096 -0.006 -8.413 0.810 -0.655 -0.438 -0.195 D 49 47 3 50 3 0 6 102 167 -7.089 -1.872 -0.475 IR 50 50 3 50 3 1 10 105 170 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 88 - a - - MR 51 50 3 53 3 1 9 103 168 -10.101 -0.006 -8.419 0.667 -0.908 -0.383 0.154 D 52 50 3 53 3 0 6 102 167 -6.992 -0.828 -1.222 IR 53 53 3 53 3 1 9 104 169 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 87 - u - - MR 54 53 3 56 5 1 8 102 167 -8.797 -0.141 -4.872 -8.028 -4.237 0.149 -0.203 -0.719 0.501 D 55 53 3 56 5 0 5 101 166 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 9 102 168 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 86 u a - - MP 57 56 3 61 6 2 12 102 167 -2.273 -9.997 -0.346 -8.774 -9.054 -9.449 -0.992 -0.395 -2.174 1.207 -1.975 -2.247 1.044 -1.509 -2.178 0.782 -2.697 0.831 1.303 0.277 -0.313 -0.045 ML 58 56 3 61 6 1 6 101 166 -2.203 -7.314 -1.225 -1.722 -7.163 -4.693 0.607 -0.312 -0.657 0.052 MR 59 56 3 61 6 1 6 89 154 -7.029 -5.758 -1.544 -5.736 -0.870 -3.949 0.302 -0.369 -0.266 0.217 D 60 56 3 61 6 0 3 80 145 -10.279 -8.978 -0.712 -5.457 -5.474 -1.550 IL 61 61 5 61 6 1 11 105 170 -0.408 -7.183 -2.092 -8.838 -9.614 -9.275 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 7 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 31 85 a u - - MP 63 62 6 67 6 2 11 64 83 -10.152 -10.091 -0.010 -8.868 -9.148 -9.543 -3.278 -1.758 -4.267 2.868 -5.207 -4.952 -0.531 -4.863 -4.598 2.425 -4.918 -0.232 -0.354 -4.199 -2.485 -2.710 ML 64 62 6 67 6 1 5 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 5 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 2 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 6 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 7 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 32 84 a u - - MP 69 68 6 73 6 2 10 62 81 -10.152 -10.091 -0.010 -8.868 -9.148 -9.543 -4.168 -3.062 -3.415 2.589 -4.757 -4.715 0.563 -3.851 -4.405 2.524 -4.729 -0.087 -0.240 -3.981 -1.816 -3.061 ML 70 68 6 73 6 1 5 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 5 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 1 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 6 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 6 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 33 83 u a - - MP 75 74 6 79 6 2 8 60 79 -10.152 -10.091 -0.010 -8.868 -9.148 -9.543 -2.566 -2.870 -2.912 1.986 -2.229 -3.761 1.527 -2.476 -2.949 0.782 -3.512 -0.680 2.191 -3.057 -0.460 -1.853 ML 76 74 6 79 6 1 5 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 4 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 1 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 5 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 6 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 34 82 u a - - MP 81 80 6 85 6 2 6 58 77 -10.152 -10.091 -0.010 -8.868 -9.148 -9.543 -2.239 -2.507 -2.521 1.259 -2.021 -3.001 1.454 -2.818 -2.579 1.188 -3.147 0.027 2.284 -2.285 -0.352 -1.488 ML 82 80 6 85 6 1 4 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 3 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 1 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 5 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 5 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 35 81 c g - - MP 87 86 6 91 4 2 4 56 75 -8.869 -9.076 -0.309 -2.403 -3.185 -3.237 -2.984 0.732 -1.795 -4.176 2.342 -2.775 -3.343 1.754 -3.896 -0.675 1.688 -3.478 -0.381 -2.382 ML 88 86 6 91 4 1 3 57 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 2 56 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 5 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 36 - a - - - ML 93 92 6 95 3 1 5 54 73 -9.521 -0.007 -8.175 0.386 0.001 -1.165 0.317 D 94 92 6 95 3 0 0 52 71 -8.974 -2.514 -0.281 IL 95 95 3 95 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - u - - - ML 96 95 3 98 3 1 4 53 72 -2.753 -0.334 -4.104 -0.002 -0.332 -1.210 0.828 D 97 95 3 98 3 0 0 50 68 -7.648 -2.253 -0.349 IL 98 98 3 98 3 1 5 54 73 -1.488 -0.717 -4.827 0.000 0.000 0.000 0.000 [ MATR 27 ] - 80 - u - - MR 99 98 3 101 3 1 5 50 69 -9.825 -0.007 -8.143 0.211 -0.587 -1.188 0.798 D 100 98 3 101 3 0 0 49 67 -9.066 -2.970 -0.200 IR 101 101 3 101 3 1 4 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 79 - a - - MR 102 101 3 104 5 1 4 49 68 -8.530 -0.014 -8.346 -8.558 -9.449 0.434 -0.669 -0.233 0.225 D 103 101 3 104 5 0 0 48 67 -7.260 -0.157 -4.886 -6.317 -4.312 IR 104 104 3 104 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 40 78 u a - - MP 105 104 3 109 6 2 4 48 67 -10.152 -10.091 -0.010 -8.868 -9.148 -9.543 -2.065 -2.214 -2.404 0.986 -1.312 -1.418 1.804 -2.718 -2.464 0.713 -3.035 -0.934 2.241 -2.330 0.280 -1.511 ML 106 104 3 109 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 41 77 c g - - MP 111 110 6 115 4 2 2 46 65 -8.869 -9.076 -0.727 -1.351 -4.165 -4.023 -4.227 0.216 -2.894 -5.069 2.516 -3.157 -4.148 0.488 -4.677 -1.816 2.473 -4.398 0.129 -2.362 ML 112 110 6 115 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 48 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 47 66 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 42 - a - - - ML 117 116 6 119 3 1 1 44 63 -4.209 -0.137 -4.781 0.474 -0.338 -0.478 0.140 D 118 116 6 119 3 0 0 42 61 -9.935 -1.557 -0.602 IL 119 119 3 119 3 1 1 45 64 -1.787 -0.587 -4.487 0.000 0.000 0.000 0.000 [ MATL 32 ] 44 - a - - - ML 120 119 3 122 3 1 2 43 62 -9.355 -0.008 -8.009 0.806 -1.210 -1.388 0.523 D 121 119 3 122 3 0 0 40 59 -9.484 -4.997 -0.048 IL 122 122 3 122 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 45 - u - - - ML 123 122 3 125 3 1 1 42 61 -9.686 -0.117 -3.702 0.201 0.008 -1.465 0.568 D 124 122 3 125 3 0 0 40 58 -8.304 -3.048 -0.191 IL 125 125 3 125 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 76 - u - - MR 126 125 3 128 3 1 2 41 60 -9.595 -0.008 -7.912 0.028 -0.764 -0.705 0.830 D 127 125 3 128 3 0 0 39 58 -9.682 -2.420 -0.301 IR 128 128 3 128 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 75 - u - - MR 129 128 3 131 3 1 2 40 59 -9.700 -0.007 -8.018 0.440 -0.832 -0.696 0.551 D 130 128 3 131 3 0 0 38 57 -9.443 -3.311 -0.156 IR 131 131 3 131 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 74 - u - - MR 132 131 3 134 5 1 1 39 58 -8.412 -0.016 -8.228 -8.440 -9.332 0.028 -1.300 -0.417 0.868 D 133 131 3 134 5 0 0 38 57 -7.619 -0.137 -5.245 -6.676 -4.347 IR 134 134 3 134 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 46 73 g c - - MP 135 134 3 139 6 2 2 38 57 -10.149 -10.088 -0.010 -8.865 -9.145 -9.540 -0.207 -2.089 -2.174 1.410 -2.176 -3.148 1.040 -2.657 -1.909 1.951 -1.970 -0.566 1.647 -2.437 -0.513 -1.357 ML 136 134 3 139 6 1 1 37 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 34 53 -9.154 -7.852 -3.649 -4.332 -3.066 -0.424 IL 139 139 5 139 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 47 72 g c - - MP 141 140 6 145 6 2 2 36 55 -10.149 -10.088 -0.010 -8.865 -9.145 -9.540 -2.362 -2.139 -3.019 0.689 -2.723 -3.156 2.100 -2.872 -3.117 2.552 -3.221 -0.999 0.710 -3.119 -0.849 -1.948 ML 142 140 6 145 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 35 53 -7.060 -5.789 -1.698 -5.767 -0.775 -3.981 0.569 -0.523 -0.227 -0.049 D 144 140 6 145 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 48 71 g c - - MP 147 146 6 151 4 2 2 34 53 -5.520 -9.937 -0.057 -5.959 -3.015 -0.513 -4.238 2.487 -5.254 -4.882 -0.482 -4.876 -4.615 2.776 -4.905 -0.548 -0.612 -4.134 -2.456 -2.292 ML 148 146 6 151 4 1 1 33 52 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 33 52 -4.259 -12.686 -0.345 -2.642 0.260 -0.102 -0.384 0.143 D 150 146 6 151 4 0 0 31 50 -12.737 -14.007 -2.036 -0.404 IL 151 151 5 151 4 1 1 33 52 -2.540 -4.728 -0.569 -3.106 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 70 - U - - MR 153 152 6 155 5 1 1 32 51 -6.227 -0.028 -8.607 -8.819 -9.711 -2.078 -1.688 -1.149 1.586 D 154 152 6 155 5 0 0 31 49 -5.443 -0.652 -3.069 -4.500 -2.495 IR 155 155 3 155 5 1 1 32 51 -2.547 -0.443 -6.058 -4.226 -5.332 0.000 0.000 0.000 0.000 [ MATP 41 ] 51 68 G C - - MP 156 155 3 160 6 2 2 31 50 -10.152 -10.091 -0.010 -8.868 -9.148 -9.543 -5.324 -2.502 -5.237 -0.153 -6.308 -5.303 -1.338 -5.884 -5.226 3.699 -5.466 -1.197 -0.478 -3.649 -3.376 -4.198 ML 157 155 3 160 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 3 160 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 3 160 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 52 67 U A - - MP 162 161 6 166 6 2 2 29 48 -10.152 -10.091 -0.010 -8.868 -9.148 -9.543 -7.012 -6.510 -6.618 -1.293 -5.328 -7.109 -1.026 -6.042 -6.542 -2.925 -6.852 -4.126 3.873 -7.203 -2.940 -4.987 ML 163 161 6 166 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 53 66 G C - - MP 168 167 6 172 4 2 2 27 45 -8.869 -9.076 -0.014 -7.490 -5.877 -4.523 -5.711 -1.066 -5.234 -5.821 2.080 -5.655 -5.560 3.366 -5.830 -2.222 -1.405 -5.605 -2.759 -4.586 ML 169 167 6 172 4 1 1 29 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 30 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 54 - G - - - ML 174 173 6 176 3 1 1 24 43 -9.807 -0.006 -8.461 -4.239 -5.663 1.952 -4.098 D 175 173 6 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 55 - A - - - ML 177 176 3 179 3 1 1 23 42 -9.807 -0.006 -8.461 1.928 -4.714 -3.135 -4.524 D 178 176 3 179 3 0 0 23 42 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 56 - A - - - ML 180 179 3 182 3 1 1 22 41 -9.807 -0.006 -8.461 1.945 -4.109 -4.424 -4.505 D 181 179 3 182 3 0 0 22 41 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 57 - A - - - ML 183 182 3 185 3 1 1 21 39 -9.807 -0.006 -8.461 1.972 -5.582 -5.008 -5.255 D 184 182 3 185 3 0 0 21 39 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - C - - - ML 186 185 3 188 3 1 1 20 38 -9.807 -0.006 -8.461 -5.090 1.962 -5.605 -4.182 D 187 185 3 188 3 0 0 20 38 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 59 - A - - - ML 189 188 3 191 3 1 1 19 37 -9.807 -0.006 -8.461 1.801 -3.321 -2.331 -2.204 D 190 188 3 191 3 0 0 19 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 60 - A - - - ML 192 191 3 194 3 1 1 17 36 -9.807 -0.006 -8.461 1.617 -0.995 -2.776 -1.813 D 193 191 3 194 3 0 0 18 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 61 - G - - - ML 195 194 3 197 3 1 1 16 35 -9.807 -0.006 -8.461 -4.504 -6.077 1.969 -5.237 D 196 194 3 197 3 0 0 17 35 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 62 - G - - - ML 198 197 3 200 3 1 1 15 33 -9.807 -0.006 -8.461 -4.504 -6.077 1.969 -5.237 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 63 - A - - - ML 201 200 3 203 3 1 1 13 32 -9.807 -0.006 -8.461 1.407 -0.511 -2.392 -1.136 D 202 200 3 203 3 0 0 15 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 64 - A - - - ML 204 203 3 206 3 1 1 12 30 -9.807 -0.006 -8.461 1.331 0.078 -2.487 -2.004 D 205 203 3 206 3 0 0 13 32 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 65 - A - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 1.972 -5.582 -5.008 -5.255 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Cyano-1 ACC RF01701 DESC Cyano-1 RNA LENG 69 MAXL 134 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 04:50:55 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01701/CM NSEQ 265 EFFN 67.402420 CKSUM 1107633353 STATS LOCAL MSV -8.2930 0.71880 STATS LOCAL VITERBI -9.0184 0.71880 STATS LOCAL FORWARD -3.9906 0.71880 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.13015 1.79072 1.31243 1.42292 1.38629 1.38629 1.38629 1.38629 0.01880 6.36033 4.08074 1.46634 0.26236 0.00000 * 1 1.17175 2.09490 1.59961 1.00753 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.00352 6.34505 6.34505 1.46634 0.26236 2.46578 0.08877 2 1.11953 2.02724 2.04437 0.88575 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.00352 6.34505 6.34505 1.46634 0.26236 0.18619 1.77263 3 1.25619 2.43130 0.80597 1.71099 3 g - - : 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 4 1.73180 2.30129 1.95235 0.54306 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 5 2.34301 3.06620 0.35788 1.84385 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 6 2.20557 2.63746 3.37757 0.24317 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.00860 6.36033 4.98573 1.46634 0.26236 1.09861 0.40547 7 5.99445 7.13333 0.03008 3.63653 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.00348 6.35521 6.35521 1.46634 0.26236 0.40938 1.09083 8 3.66191 3.73327 3.94172 0.07151 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.28973 6.36033 1.38708 1.46634 0.26236 1.09861 0.40547 9 2.80817 5.34752 0.10107 3.47211 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.14368 2.02847 6.07521 0.03460 3.38118 0.01375 4.29384 10 0.00340 7.11978 6.60730 6.69715 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 11 3.21085 5.95414 0.07364 3.57295 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 12 3.42935 6.21514 0.05777 3.82927 13 G - - : 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 13 0.07296 5.37351 3.28959 3.55935 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.04346 6.36033 3.19912 1.46634 0.26236 1.09861 0.40547 14 1.98624 5.49689 0.16968 4.21620 15 G - - : 1.38629 1.38629 1.38629 1.38629 0.05513 6.32048 2.95968 1.46634 0.26236 0.49960 0.93337 15 1.35268 2.16341 1.41732 0.95670 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.42382 1.06824 6.29630 1.53214 0.24344 0.05281 2.96729 16 0.42541 4.56717 1.20979 3.27416 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 17 0.64941 2.49608 1.02799 3.28305 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 18 1.07271 1.88125 2.19220 0.93179 33 u - - < 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 19 1.81412 1.86871 1.51399 0.77075 34 u - - < 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 20 2.48658 0.94449 1.22329 1.45386 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.22806 6.36033 1.59853 1.46634 0.26236 1.09861 0.40547 21 1.06496 1.30408 2.61366 1.16935 36 a - - - 1.38629 1.38629 1.38629 1.38629 0.00433 6.13661 6.13661 1.46634 0.26236 1.85246 0.17061 22 1.45247 1.64734 2.61144 0.69311 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.19313 1.75133 6.17408 0.51683 0.90735 0.01994 3.92492 23 2.16055 1.21510 2.41585 0.69562 40 u - - < 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 24 3.17962 0.91487 2.82964 0.69556 41 u - - < 1.38629 1.38629 1.38629 1.38629 0.55431 6.36033 0.85849 1.46634 0.26236 1.09861 0.40547 25 0.97784 1.61407 1.74907 1.38284 42 a - - - 1.38629 1.38629 1.38629 1.38629 0.11289 2.72357 3.19150 0.08878 2.46568 1.07237 0.41885 26 0.68793 2.86719 3.05473 0.93296 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.00495 6.00419 6.00419 1.46634 0.26236 5.17227 0.00569 27 1.22931 1.31698 3.18722 0.92061 45 u - - - 1.38629 1.38629 1.38629 1.38629 0.00495 6.00419 6.00419 1.46634 0.26236 0.02269 3.79731 28 1.29692 2.48172 0.94969 1.36192 46 g - - < 1.38629 1.38629 1.38629 1.38629 0.00348 6.35694 6.35694 1.46634 0.26236 1.60038 0.22542 29 2.59247 1.03291 0.72255 2.48072 47 g - - < 1.38629 1.38629 1.38629 1.38629 0.00348 6.35694 6.35694 1.46634 0.26236 1.60038 0.22542 30 0.62329 4.44863 0.86178 3.51586 48 A - - < 1.38629 1.38629 1.38629 1.38629 0.02546 3.75497 6.35694 0.40171 1.10616 0.51691 0.90724 31 3.80024 6.08325 0.07327 3.07893 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 32 3.37651 4.71816 5.26404 0.04948 52 U - - < 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 33 5.53269 1.18397 0.37885 5.23326 53 G - - < 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 34 6.04428 7.23051 0.01408 4.51994 54 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 35 0.02522 6.64431 3.82005 6.39110 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 36 0.01346 4.63148 6.32355 6.30121 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 37 0.00340 7.11978 6.60730 6.69715 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 38 6.72409 0.00447 7.05801 6.03308 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 39 0.09139 5.21325 3.28880 3.11020 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 40 0.20471 2.03706 4.42386 3.15324 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 41 6.07730 7.30330 0.00433 6.60510 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 42 6.07730 7.30330 0.00433 6.60510 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 43 0.32962 1.67362 4.17795 2.55222 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 44 0.42150 1.16378 4.09665 4.19912 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 45 0.00340 7.11978 6.60730 6.69715 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 46 5.48787 0.38074 1.18026 5.23868 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 47 0.05113 5.60080 4.55715 3.33368 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 48 3.18927 0.06565 5.99438 3.91972 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.02112 4.23065 5.05836 0.22284 1.61066 1.09861 0.40547 49 3.87400 2.90667 2.07301 0.22469 70 U - - - 1.38629 1.38629 1.38629 1.38629 0.00348 6.35569 6.35569 1.46634 0.26236 0.43437 1.04319 50 3.71111 0.76143 4.25277 0.70456 71 u - - > 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 51 2.59296 0.71533 1.01944 2.58526 72 c - - > 1.38629 1.38629 1.38629 1.38629 0.00686 6.36033 5.27685 1.46634 0.26236 1.09861 0.40547 52 1.12116 1.07873 2.17589 1.51157 73 c - - > 1.38629 1.38629 1.38629 1.38629 0.31809 6.35694 1.30663 1.46634 0.26236 1.60038 0.22542 53 1.45241 3.10155 1.65141 0.63632 74 U - - - 1.38629 1.38629 1.38629 1.38629 0.03261 6.04361 3.51629 1.46634 0.26236 5.07534 0.00627 54 1.01764 2.27026 2.00596 0.91445 75 u - - - 1.38629 1.38629 1.38629 1.38629 0.09319 6.01589 2.44717 1.46634 0.26236 5.14485 0.00585 55 1.45151 2.18420 1.97416 0.66487 76 U - - - 1.38629 1.38629 1.38629 1.38629 0.00534 5.92805 5.92805 1.46634 0.26236 0.00976 4.63481 56 0.84488 2.90364 0.78279 2.83980 77 g - - > 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 57 0.81417 2.14291 1.15598 2.08002 78 a - - > 1.38629 1.38629 1.38629 1.38629 0.22244 6.36033 1.62097 1.46634 0.26236 1.09861 0.40547 58 1.03348 1.99800 1.48866 1.26249 79 a - - - 1.38629 1.38629 1.38629 1.38629 0.02843 6.14220 3.65449 1.46634 0.26236 4.75670 0.00863 59 1.23073 1.92985 2.63515 0.71122 80 u - - - 1.38629 1.38629 1.38629 1.38629 0.00441 6.11819 6.11819 1.46634 0.26236 0.01582 4.15415 60 1.50878 1.34474 0.92229 2.11523 81 g - - > 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 61 0.83819 1.84912 1.77345 1.42551 82 a - - > 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 62 0.97804 2.50639 1.83246 0.96137 83 u - - > 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 63 3.61709 1.16568 2.38384 0.56346 84 U - - > 1.38629 1.38629 1.38629 1.38629 0.00346 6.36033 6.36033 1.46634 0.26236 1.09861 0.40547 64 3.33981 1.26705 4.42467 0.39911 85 U - - > 1.38629 1.38629 1.38629 1.38629 0.10563 6.36033 2.31754 1.46634 0.26236 1.09861 0.40547 65 1.66963 1.19635 2.35728 0.88018 86 u - - > 1.38629 1.38629 1.38629 1.38629 0.00384 6.25853 6.25853 1.46634 0.26236 0.03450 3.38414 66 1.32404 1.49565 1.99094 0.98545 87 u - - : 1.38629 1.38629 1.38629 1.38629 0.02440 6.36033 3.79959 1.46634 0.26236 1.09861 0.40547 67 0.82470 2.26797 1.64350 1.32874 88 a - - : 1.38629 1.38629 1.38629 1.38629 0.00790 6.33946 5.09968 1.46634 0.26236 2.70440 0.06925 68 0.70649 1.93037 1.69193 1.72953 89 a - - : 1.38629 1.38629 1.38629 1.38629 0.04711 6.33512 3.11796 1.46634 0.26236 2.85649 0.05919 69 0.39726 2.89445 2.70874 1.58041 90 A - - : 1.38629 1.38629 1.38629 1.38629 0.00186 6.28986 * 1.46634 0.26236 0.00000 * //