# STOCKHOLM 1.0
#=GF ID Chloroflexi-1
#=GF AC RF01698
#=GF DE Chloroflexi-1 RNA
#=GF AU Weinberg Z; 0000-0002-6681-3624
#=GF GA 80.0
#=GF NC 42.8
#=GF TC 95.9
#=GF SE Published; PMID:20230605;
#=GF SS Published; PMID:20230605;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.62 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 20230605
#=GF RT Comparative genomics reveals 104 candidate structured RNAs from bacteria,
#=GF RT archaea and their metagenomes.
#=GF RA Weinberg Z, Wang JX, Bogue J, Yang J, Corbino K, Moy RH, Breaker RR
#=GF RL Genome Biol. 2010;11:R31.
#=GF WK Chloroflexi-1_RNA_motif
#=GF SQ 3

CP001337.1/880748-880664 CGUCCGGUGGAUUGCGACGGGCAGGAAGGCAGGCAUUGGCCGGCCUUCCUGCCCGCUUUCGGUUGCCGCUGACGGGAACACGUCA
CP001337.1/822346-822429 CGUCCCGUCGGCUGCGGCGGGCAGCACGGCCGACAUUGGCCGGCCG-GUUGCCCGCCUUCGUUUGUUGAUGACCGAAACGCAACA
CP001337.1/830453-830536 CGUCCCGUGGGAUGCGGCGGGCAGCACGGCCGACAUUGGCCGGCCG-GUUGCCCGCCUUCGUUUGUUGAUGACCGAAACGCAACA
#=GC SS_cons             :::::::::::::::<<<<<<<<<<-<<<<<<________>>>>>>.>>>>>>>>>>:<<<<<____>>>>>:::::::::::::
#=GC RF                  CGUCCcGUgGguUGCGgCGGGCagcAcGGCcGaCAUUGGCCgGCCg.gcuGCCCGcCUuCgguUGuugcuGaCcGaAACgCaaCA
//