INFERNAL1/a [1.1.5 | Sep 2023] NAME Chlorobi-1 ACC RF01696 DESC Chlorobi-1 RNA STATES 210 NODES 55 CLEN 67 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 20:10:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01696/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 15 EFFN 3.255615 CKSUM 176643867 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 52.90 NC 40.90 EFP7GF -12.1270 0.71904 ECMLC 0.74326 -6.63269 1.26219 1600000 424226 0.002829 ECMGC 0.45498 -16.95067 -4.88004 1600000 97087 0.004120 ECMLI 0.77939 -3.99440 2.83294 1600000 245554 0.004887 ECMGI 0.47832 -13.04194 -2.15908 1600000 72910 0.005486 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 102 -7.409 -7.616 -0.038 -6.030 IL 1 1 2 1 4 1 22 87 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 21 82 102 -8.397 -0.015 -7.051 0.373 -1.450 0.758 -0.625 D 4 2 3 5 3 0 17 81 100 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 20 81 100 -8.397 -0.015 -7.051 0.990 -1.192 -1.327 0.236 D 7 5 3 8 3 0 17 80 99 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 20 80 99 -8.397 -0.015 -7.051 1.393 -1.141 -1.581 -0.772 D 10 8 3 11 3 0 16 79 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 19 79 98 -8.763 -0.080 -4.274 1.277 -1.021 -1.459 -0.474 D 13 11 3 14 3 0 15 78 97 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 19 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 70 - c - - MR 15 14 3 17 3 1 18 78 97 -8.697 -0.015 -7.015 -0.289 0.622 -1.449 0.352 D 16 14 3 17 3 0 14 77 96 -6.965 -0.849 -1.195 IR 17 17 3 17 3 1 17 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 69 - C - - MR 18 17 3 20 3 1 17 77 96 -8.763 -0.014 -7.080 -1.516 1.363 -2.389 -0.173 D 19 17 3 20 3 0 12 76 95 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 17 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 68 - G - - MR 21 20 3 23 3 1 16 76 95 -8.763 -0.014 -7.080 -0.392 -1.380 1.275 -1.207 D 22 20 3 23 3 0 11 74 94 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 16 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 67 - G - - MR 24 23 3 26 3 1 15 75 94 -8.763 -0.014 -7.080 -0.433 -1.830 1.302 -0.966 D 25 23 3 26 3 0 11 73 93 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 15 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 66 - C - - MR 27 26 3 29 3 1 15 74 93 -8.763 -0.014 -7.080 -0.556 1.181 -1.335 -0.607 D 28 26 3 29 3 0 10 72 92 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 14 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 65 - G - - MR 30 29 3 32 3 1 14 73 92 -8.763 -0.014 -7.080 -0.128 -1.280 1.134 -1.065 D 31 29 3 32 3 0 9 71 91 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 13 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 64 - A - - MR 33 32 3 35 3 1 13 72 91 -8.763 -0.014 -7.080 1.268 -1.884 -0.100 -1.365 D 34 32 3 35 3 0 9 70 90 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 12 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 63 - A - - MR 36 35 3 38 3 1 12 71 90 -8.763 -0.014 -7.080 1.854 -3.244 -2.793 -2.876 D 37 35 3 38 3 0 8 69 89 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 11 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 62 - A - - MR 39 38 3 41 3 1 11 70 89 -8.763 -0.014 -7.080 1.640 -2.333 -1.247 -1.917 D 40 38 3 41 3 0 7 68 88 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 11 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 61 - A - - MR 42 41 3 44 3 1 10 69 88 -8.763 -0.014 -7.080 1.356 -1.579 -0.897 -0.814 D 43 41 3 44 3 0 7 67 87 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 10 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 60 - a - - MR 45 44 3 47 3 1 9 68 87 -8.763 -0.014 -7.080 0.933 -1.152 -0.515 -0.088 D 46 44 3 47 3 0 6 66 86 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 9 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 59 - a - - MR 48 47 3 50 3 1 8 67 86 -8.763 -0.014 -7.080 0.865 -0.716 -0.621 -0.120 D 49 47 3 50 3 0 5 65 85 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 58 - a - - MR 51 50 3 53 3 1 7 66 85 -8.763 -0.014 -7.080 0.794 -0.342 -0.360 -0.520 D 52 50 3 53 3 0 5 64 84 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 7 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 57 - a - - MR 54 53 3 56 3 1 6 65 84 -1.769 -1.268 -1.779 0.223 -0.797 0.190 0.159 D 55 53 3 56 3 0 5 63 82 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 6 65 84 -2.172 -0.403 -5.524 0.000 0.000 0.000 0.000 [ MATR 19 ] - 53 - A - - MR 57 56 3 59 2 1 5 63 83 -8.261 -0.005 1.682 -2.212 -1.860 -1.739 D 58 56 3 59 2 0 4 62 82 -6.529 -0.016 IR 59 59 3 59 2 1 6 64 84 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 20 ] - - - - - - B 60 59 3 61 123 0 4 62 82 [ BEGL 21 ] - - - - - - S 61 60 1 62 4 0 0 33 52 -0.113 -4.135 -6.492 -7.132 [ MATP 22 ] 5 24 u a - - MP 62 61 1 66 6 2 2 33 52 -9.244 -9.183 -0.019 -7.960 -8.239 -8.634 -1.783 -1.962 -0.924 1.173 -1.224 -2.819 1.715 -2.264 -2.027 0.957 -2.595 -0.542 1.827 -2.112 -0.032 -0.296 ML 63 61 1 66 6 1 1 32 51 -6.921 -7.267 -0.678 -1.676 -7.117 -4.647 -0.263 -0.542 -0.891 0.956 MR 64 61 1 66 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 1 66 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 6 23 a u - - MP 68 67 6 72 6 2 2 31 50 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -2.479 -2.213 -2.640 1.573 -2.631 -3.442 1.115 -2.904 -2.667 1.467 -3.173 1.233 1.321 -2.760 -0.609 0.302 ML 69 67 6 72 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 7 22 C G - - MP 74 73 6 78 6 2 2 29 48 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -5.514 -5.501 -5.031 -1.674 -3.572 -5.314 3.765 -4.480 -5.130 -1.537 -5.269 -3.480 -0.178 -5.515 -1.320 -3.944 ML 75 73 6 78 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 8 21 C G - - MP 80 79 6 84 6 2 2 27 46 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -4.560 -4.536 -4.254 -0.679 -2.916 -4.671 3.396 -3.719 -4.278 -0.496 -4.573 -2.490 1.410 -4.608 -0.577 -3.096 ML 81 79 6 84 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 9 20 u a - - MP 86 85 6 90 6 2 2 25 44 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -4.118 -4.137 -3.941 -0.447 -2.805 -4.450 1.502 -3.552 -3.968 -0.292 -4.324 -2.212 2.497 -4.242 2.321 -2.853 ML 87 85 6 90 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 10 19 C G - - MP 92 91 6 96 6 2 2 23 42 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -5.514 -5.501 -5.031 -1.674 -3.572 -5.314 3.765 -4.480 -5.130 -1.537 -5.269 -3.480 -0.178 -5.515 -1.320 -3.944 ML 93 91 6 96 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 6 96 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 96 96 5 96 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 11 18 A U - - MP 98 97 6 102 6 2 2 21 40 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -4.059 -2.930 -4.153 3.397 -5.167 -5.967 -0.843 -4.274 -3.947 0.824 -4.546 0.914 -1.042 -4.880 -2.733 -2.919 ML 99 97 6 102 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 6 102 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 12 17 C G - - MP 104 103 6 108 4 2 2 19 38 -7.409 -7.616 -0.038 -6.030 -4.659 -4.643 -4.327 -0.788 -2.964 -4.722 3.462 -3.779 -4.358 -0.609 -4.636 -2.606 1.219 -4.696 -0.631 -3.174 ML 105 103 6 108 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 107 103 6 108 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 108 108 5 108 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 109 109 6 109 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 13 - G - - - ML 110 109 6 112 3 1 1 16 34 -8.397 -0.015 -7.051 -2.465 -3.801 1.863 -3.180 D 111 109 6 112 3 0 0 16 34 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 14 - C - - - ML 113 112 3 115 3 1 1 14 33 -8.397 -0.015 -7.051 -2.793 1.818 -3.611 -2.007 D 114 112 3 115 3 0 0 15 33 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 15 - C - - - ML 116 115 3 118 3 1 1 13 31 -8.397 -0.015 -7.051 -0.210 1.164 -1.869 -0.689 D 117 115 3 118 3 0 0 13 32 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 16 - a - - - ML 119 118 3 121 2 1 1 1 1 * 0.000 0.661 0.465 -1.441 -0.576 D 120 118 3 121 2 0 0 0 0 * 0.000 IL 121 121 3 121 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 122 121 3 -1 0 0 0 0 0 [ BEGR 35 ] - - - - - - S 123 60 1 124 5 0 0 42 61 -7.478 -0.030 -7.293 -7.505 -8.397 IL 124 124 2 124 5 1 1 43 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 52 G C - - MP 125 124 2 129 6 2 2 42 61 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -5.579 -3.503 -5.809 -0.387 -6.397 -5.005 -1.553 -6.074 -4.832 3.788 -5.118 -1.247 -1.920 -5.004 -3.644 -4.674 ML 126 124 2 129 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 2 129 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 2 129 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 26 51 a u - - MP 131 130 6 135 6 2 2 40 59 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.321 -2.650 -3.409 2.732 -3.573 -4.426 0.586 -3.612 -3.403 1.435 -3.926 0.781 1.020 -3.646 -1.309 -2.355 ML 132 130 6 135 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 27 50 G C - - MP 137 136 6 141 6 2 2 38 57 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.930 -2.674 -3.889 1.629 -4.742 -4.581 -0.101 -4.347 -3.989 3.104 -4.370 0.696 -0.363 -3.882 -2.074 -2.804 ML 138 136 6 141 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 28 49 C G - - MP 143 142 6 147 6 2 2 36 55 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -4.155 -4.139 -3.979 -0.344 -2.805 -4.501 3.027 -3.555 -3.987 -0.172 -4.352 -2.125 1.299 -4.271 1.451 -2.841 ML 144 142 6 147 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 29 48 A U - - MP 149 148 6 153 6 2 2 34 53 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.949 -3.128 -3.955 3.284 -3.921 -5.094 0.373 -3.959 -3.889 0.806 -4.400 -0.678 0.633 -4.406 -1.586 -2.816 ML 150 148 6 153 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 30 47 G C - - MP 155 154 6 159 6 2 2 32 51 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -4.408 -3.017 -4.358 0.450 -4.747 -4.626 -0.096 -4.708 -4.300 3.468 -4.617 -0.700 0.268 -4.163 -2.123 -3.276 ML 156 154 6 159 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 31 46 g c - - MP 161 160 6 165 6 2 2 30 49 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.614 -2.544 -3.563 1.180 -4.084 -4.241 0.908 -3.999 -3.767 2.885 -4.134 1.077 0.148 -3.529 -1.525 -2.521 ML 162 160 6 165 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 32 45 u a - - MP 167 166 6 171 6 2 2 28 47 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -2.398 -2.500 -2.549 0.988 -1.097 -3.385 1.818 -2.690 -2.579 0.833 -3.131 -0.844 2.262 -2.701 -0.163 -0.374 ML 168 166 6 171 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 33 44 G C - - MP 173 172 6 177 6 2 2 26 45 -9.301 -9.240 -0.018 -8.017 -8.297 -8.692 -3.705 -2.677 -3.670 0.892 -4.066 -4.400 0.375 -0.435 -3.802 3.199 -4.201 -0.343 0.024 -3.709 -1.580 -2.616 ML 174 172 6 177 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 6 177 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 34 43 u a - - MP 179 178 6 183 4 2 2 24 42 -7.409 -7.616 -0.170 -3.320 -3.567 -3.105 -3.574 0.561 -3.051 -4.334 1.344 -3.517 -3.588 2.154 -4.052 -0.895 2.443 -3.735 -0.690 -2.466 ML 180 178 6 183 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 182 178 6 183 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 183 183 5 183 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 184 184 6 184 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - A - - - ML 185 184 6 187 3 1 1 21 40 -8.276 -0.017 -6.930 1.825 -3.003 -2.574 -2.611 D 186 184 6 187 3 0 0 20 39 -7.176 -0.609 -1.568 IL 187 187 3 187 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 36 - A - - - ML 188 187 3 190 3 1 1 20 38 -8.397 -0.015 -7.051 1.545 -2.150 -0.861 -1.703 D 189 187 3 190 3 0 0 19 38 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 37 - U - - - ML 191 190 3 193 3 1 1 18 37 -8.397 -0.015 -7.051 -2.310 -2.167 -3.074 1.790 D 192 190 3 193 3 0 0 18 37 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 38 - G - - - ML 194 193 3 196 3 1 1 17 36 -8.397 -0.015 -7.051 -2.465 -3.801 1.863 -3.180 D 195 193 3 196 3 0 0 17 35 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 39 - G - - - ML 197 196 3 199 3 1 1 16 34 -8.397 -0.015 -7.051 -2.465 -3.801 1.863 -3.180 D 198 196 3 199 3 0 0 16 34 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 40 - G - - - ML 200 199 3 202 3 1 1 14 33 -8.397 -0.015 -7.051 -2.465 -3.801 1.863 -3.180 D 201 199 3 202 3 0 0 15 33 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 41 - G - - - ML 203 202 3 205 3 1 1 13 31 -8.397 -0.015 -7.051 -2.465 -3.801 1.863 -3.180 D 204 202 3 205 3 0 0 13 32 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 42 - G - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -2.465 -3.801 1.863 -3.180 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Chlorobi-1 ACC RF01696 DESC Chlorobi-1 RNA LENG 67 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 20:10:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01696/CM NSEQ 15 EFFN 5.423584 CKSUM 176643867 STATS LOCAL MSV -7.8212 0.71904 STATS LOCAL VITERBI -8.8615 0.71904 STATS LOCAL FORWARD -3.9095 0.71904 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34876 1.47668 1.13413 1.65893 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 0.00000 * 1 1.13022 2.66355 0.75152 1.99739 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 2 0.60975 2.47102 2.56929 1.21933 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 3 0.32416 2.31116 2.83103 2.13057 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 4 0.40129 2.22752 2.70920 1.85687 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 5 1.57960 1.41421 1.78446 0.95989 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 6 1.45658 2.13242 1.06511 1.19162 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 7 4.17102 0.08314 4.13044 3.03098 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 8 3.44727 0.30404 3.27708 1.64715 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 9 3.46012 2.01649 3.30354 0.22477 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 10 4.29550 0.07850 4.20760 3.05797 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 11 0.27711 3.93135 1.63148 3.62027 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 12 3.54249 0.26348 3.36810 1.78242 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 13 3.69817 4.68282 0.05006 4.21261 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 14 4.04894 0.06287 4.54256 3.41594 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 15 1.62312 0.43293 3.14070 2.19949 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 16 0.86021 0.95461 2.71498 2.07338 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 17 1.94589 3.52530 0.23466 3.30076 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 18 3.79839 2.62075 3.70478 0.12756 18 U - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 19 3.33624 4.37324 0.06680 4.10795 19 G - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 20 0.88792 3.46875 0.65780 3.23544 20 G - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 21 1.79490 3.45049 0.27093 3.23260 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 22 3.33535 4.37168 0.06689 4.10627 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 23 1.71511 1.88523 1.94815 0.64298 23 U - - > 1.38629 1.38629 1.38629 1.38629 0.12486 4.39621 2.25323 1.46634 0.26236 1.09861 0.40547 24 1.20166 1.92318 1.18857 1.39228 24 g - - > 1.38629 1.38629 1.38629 1.38629 0.02754 4.29889 4.29889 1.46634 0.26236 0.21075 1.66059 25 3.31254 4.27391 0.06694 4.24057 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 26 0.59121 2.82602 1.41976 1.92879 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 27 1.53169 2.99316 0.39360 2.82889 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 28 3.25820 0.55306 3.05157 1.08154 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 29 0.29406 2.93636 2.35051 2.24068 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 30 2.63210 3.18667 0.22199 2.45528 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 31 1.89260 2.14470 0.43264 2.48383 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 32 1.93147 1.36722 1.97854 0.77223 32 u - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 33 2.29576 2.14305 0.32635 2.80567 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 34 2.51111 2.04093 1.10748 0.77974 34 u - - < 1.38629 1.38629 1.38629 1.38629 0.12486 4.39621 2.25323 1.46634 0.26236 1.09861 0.40547 35 0.06153 4.11469 3.76591 3.90222 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02754 4.29889 4.29889 1.46634 0.26236 0.21075 1.66059 36 0.23791 3.33072 2.03656 3.09048 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 37 3.62534 3.43395 4.16836 0.07729 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 38 3.69817 4.68282 0.05006 4.21261 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 39 3.69817 4.68282 0.05006 4.21261 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 40 3.69817 4.68282 0.05006 4.21261 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 41 3.69817 4.68282 0.05006 4.21261 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 42 3.69817 4.68282 0.05006 4.21261 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 43 0.83864 1.17349 1.87684 2.25052 43 a - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 44 3.05474 0.37057 2.71385 1.62840 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 45 0.91308 2.15134 1.30939 1.54928 45 a - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 46 2.74122 0.68568 2.02321 1.20554 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 47 2.56936 0.25043 3.01429 2.34476 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 48 2.35064 2.66781 2.75712 0.25901 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 49 1.93964 3.21630 0.26501 3.01705 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 50 3.08453 0.55651 2.80088 1.13854 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 51 2.02659 2.12901 2.63603 0.38917 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 52 4.40304 0.08174 4.14960 2.98631 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.46132 4.39621 1.02938 1.46634 0.26236 1.09861 0.40547 53 0.11941 3.48164 3.18260 3.21078 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.84172 0.59744 3.97324 0.26886 1.44498 0.06672 2.74041 54 1.24200 2.03026 1.19291 1.28534 57 g - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 55 0.76820 1.59872 1.64561 1.95828 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 56 0.72326 1.94537 1.86821 1.52557 59 a - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 57 0.66677 2.38282 1.78088 1.48786 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 58 0.35755 2.77377 2.11349 2.14244 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 59 0.17786 3.46530 2.37538 3.25198 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 60 0.05150 4.28817 3.92944 4.08578 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 61 0.42065 3.15571 1.41543 2.84810 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 62 1.57766 2.41338 0.47924 2.46774 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 63 1.96265 0.42437 2.50207 2.09221 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 64 1.82393 2.96940 0.38254 2.25238 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 65 1.81159 2.47777 0.39035 2.57893 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 66 2.89702 0.33439 3.54151 1.60909 69 C - - : 1.38629 1.38629 1.38629 1.38629 0.08139 4.39621 2.72043 1.46634 0.26236 1.09861 0.40547 67 1.69005 0.84033 2.65339 1.15992 70 c - - : 1.38629 1.38629 1.38629 1.38629 0.01328 4.32810 * 1.46634 0.26236 0.00000 * //