INFERNAL1/a [1.1.4 | Dec 2020] NAME Chlorobi-1 ACC RF01696 DESC Chlorobi-1 RNA STATES 210 NODES 55 CLEN 67 W 82 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:36:25 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 15 EFFN 3.240967 CKSUM 176643867 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 52.50 NC 38.20 EFP7GF -12.1522 0.71902 ECMLC 0.73969 -6.67603 1.25307 1600000 423022 0.002837 ECMGC 0.44101 -17.42341 -4.97533 1600000 96880 0.004129 ECMLI 0.76420 -4.16137 2.80054 1600000 245342 0.004891 ECMGI 0.48215 -12.95257 -2.15811 1600000 72843 0.005491 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 102 -7.405 -7.612 -0.039 -6.026 IL 1 1 2 1 4 1 22 87 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 21 82 102 -8.393 -0.015 -7.047 0.415 -1.440 0.721 -0.621 D 4 2 3 5 3 0 17 81 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 20 81 101 -8.393 -0.015 -7.047 1.009 -1.201 -1.332 0.208 D 7 5 3 8 3 0 17 80 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 84 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 20 80 100 -8.393 -0.015 -7.047 1.401 -1.159 -1.588 -0.790 D 10 8 3 11 3 0 16 79 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 83 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 19 79 98 -8.759 -0.078 -4.308 1.227 -0.984 -1.412 -0.362 D 13 11 3 14 3 0 15 78 97 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 19 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 70 - c - - MR 15 14 3 17 3 1 18 78 97 -8.695 -0.015 -7.013 -0.305 0.647 -1.461 0.335 D 16 14 3 17 3 0 14 77 96 -6.951 -0.861 -1.181 IR 17 17 3 17 3 1 17 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 69 - C - - MR 18 17 3 20 3 1 17 77 96 -8.759 -0.014 -7.077 -1.526 1.373 -2.399 -0.194 D 19 17 3 20 3 0 12 76 95 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 17 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 68 - G - - MR 21 20 3 23 3 1 16 76 95 -8.759 -0.014 -7.077 -0.289 -1.352 1.227 -1.154 D 22 20 3 23 3 0 11 75 94 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 16 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 67 - G - - MR 24 23 3 26 3 1 15 75 94 -8.759 -0.014 -7.077 -0.453 -1.847 1.314 -0.988 D 25 23 3 26 3 0 11 74 93 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 15 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 66 - C - - MR 27 26 3 29 3 1 15 74 93 -8.759 -0.014 -7.077 -0.578 1.194 -1.359 -0.616 D 28 26 3 29 3 0 10 73 92 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 14 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 65 - G - - MR 30 29 3 32 3 1 14 73 92 -8.759 -0.014 -7.077 -0.146 -1.298 1.148 -1.079 D 31 29 3 32 3 0 9 72 91 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 13 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 64 - A - - MR 33 32 3 35 3 1 13 72 91 -8.759 -0.014 -7.077 1.280 -1.886 -0.129 -1.369 D 34 32 3 35 3 0 9 71 90 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 12 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 63 - A - - MR 36 35 3 38 3 1 12 71 90 -8.759 -0.014 -7.077 1.853 -3.236 -2.785 -2.867 D 37 35 3 38 3 0 8 70 89 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 11 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 62 - A - - MR 39 38 3 41 3 1 11 70 89 -8.759 -0.014 -7.077 1.643 -2.339 -1.268 -1.924 D 40 38 3 41 3 0 7 69 88 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 11 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 61 - A - - MR 42 41 3 44 3 1 10 69 88 -8.759 -0.014 -7.077 1.365 -1.591 -0.915 -0.833 D 43 41 3 44 3 0 7 68 87 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 10 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 60 - a - - MR 45 44 3 47 3 1 9 68 87 -8.759 -0.014 -7.077 0.951 -1.161 -0.532 -0.108 D 46 44 3 47 3 0 6 67 86 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 9 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 59 - a - - MR 48 47 3 50 3 1 8 67 86 -8.759 -0.014 -7.077 0.883 -0.731 -0.636 -0.136 D 49 47 3 50 3 0 5 66 85 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 58 - a - - MR 51 50 3 53 3 1 7 66 85 -8.759 -0.014 -7.077 0.815 -0.363 -0.378 -0.529 D 52 50 3 53 3 0 5 64 84 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 7 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 57 - a - - MR 54 53 3 56 3 1 6 65 84 -1.732 -1.268 -1.818 0.211 -0.792 0.160 0.199 D 55 53 3 56 3 0 5 63 82 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 6 65 84 -1.971 -0.465 -5.608 0.000 0.000 0.000 0.000 [ MATR 19 ] - 53 - A - - MR 57 56 3 59 2 1 5 63 83 -8.276 -0.005 1.688 -2.237 -1.883 -1.767 D 58 56 3 59 2 0 4 62 82 -6.496 -0.016 IR 59 59 3 59 2 1 6 64 84 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 20 ] - - - - - - B 60 59 3 61 123 0 4 62 82 [ BEGL 21 ] - - - - - - S 61 60 1 62 4 0 0 33 52 -0.111 -4.171 -6.490 -7.130 [ MATP 22 ] 5 24 u a - - MP 62 61 1 66 6 2 2 33 52 -9.244 -9.183 -0.019 -7.959 -8.239 -8.634 -1.792 -1.969 -0.947 1.167 -1.241 -2.827 1.714 -2.270 -2.035 0.957 -2.603 -0.546 1.846 -2.120 -0.034 -0.317 ML 63 61 1 66 6 1 1 32 51 -6.905 -7.251 -0.687 -1.660 -7.101 -4.630 -0.250 -0.534 -0.877 0.944 MR 64 61 1 66 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 1 66 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 6 23 a u - - MP 68 67 6 72 6 2 2 31 50 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -2.476 -2.214 -2.636 1.611 -2.630 -3.440 1.113 -2.902 -2.666 1.479 -3.173 1.201 1.308 -2.756 -0.608 0.266 ML 69 67 6 72 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 7 22 C G - - MP 74 73 6 78 6 2 2 29 48 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -5.505 -5.491 -5.024 -1.665 -3.566 -5.308 3.764 -4.472 -5.122 -1.527 -5.262 -3.469 -0.170 -5.507 -1.313 -3.936 ML 75 73 6 78 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 8 21 C G - - MP 80 79 6 84 6 2 2 27 46 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -4.564 -4.541 -4.256 -0.684 -2.916 -4.672 3.401 -3.720 -4.280 -0.501 -4.574 -2.495 1.391 -4.611 -0.578 -3.098 ML 81 79 6 84 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 9 20 u a - - MP 86 85 6 90 6 2 2 25 44 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -4.121 -4.141 -3.942 -0.452 -2.803 -4.448 1.503 -3.551 -3.970 -0.296 -4.324 -2.217 2.471 -4.244 2.351 -2.854 ML 87 85 6 90 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 10 19 C G - - MP 92 91 6 96 6 2 2 23 42 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -5.505 -5.491 -5.024 -1.665 -3.566 -5.308 3.764 -4.472 -5.122 -1.527 -5.262 -3.469 -0.170 -5.507 -1.313 -3.936 ML 93 91 6 96 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 6 96 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 96 96 5 96 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 11 18 A U - - MP 98 97 6 102 6 2 2 21 40 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -4.061 -2.933 -4.153 3.402 -5.165 -5.967 -0.841 -4.274 -3.950 0.822 -4.548 0.885 -1.041 -4.880 -2.731 -2.920 ML 99 97 6 102 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 6 102 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 12 17 C G - - MP 104 103 6 108 4 2 2 19 38 -7.405 -7.612 -0.039 -6.026 -4.663 -4.648 -4.330 -0.793 -2.966 -4.724 3.467 -3.782 -4.362 -0.615 -4.639 -2.612 1.201 -4.700 -0.634 -3.178 ML 105 103 6 108 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 107 103 6 108 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 108 108 5 108 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 109 109 6 109 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 13 - G - - - ML 110 109 6 112 3 1 1 16 34 -8.393 -0.015 -7.047 -2.457 -3.792 1.862 -3.172 D 111 109 6 112 3 0 0 16 34 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 14 - C - - - ML 113 112 3 115 3 1 1 14 33 -8.393 -0.015 -7.047 -2.783 1.816 -3.602 -1.999 D 114 112 3 115 3 0 0 15 33 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 15 - C - - - ML 116 115 3 118 3 1 1 13 31 -8.393 -0.015 -7.047 -0.238 1.178 -1.882 -0.695 D 117 115 3 118 3 0 0 13 32 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 16 - a - - - ML 119 118 3 121 2 1 1 1 1 * 0.000 0.693 0.425 -1.430 -0.580 D 120 118 3 121 2 0 0 0 0 * 0.000 IL 121 121 3 121 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 122 121 3 -1 0 0 0 0 0 [ BEGR 35 ] - - - - - - S 123 60 1 124 5 0 0 42 61 -7.474 -0.030 -7.289 -7.502 -8.393 IL 124 124 2 124 5 1 1 43 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 52 G C - - MP 125 124 2 129 6 2 2 42 61 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -5.571 -3.500 -5.800 -0.382 -6.386 -5.002 -1.545 -6.065 -4.828 3.787 -5.114 -1.243 -1.912 -4.999 -3.635 -4.665 ML 126 124 2 129 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 2 129 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 2 129 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 26 51 a u - - MP 131 130 6 135 6 2 2 40 59 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -3.329 -2.651 -3.416 2.746 -3.586 -4.438 0.577 -3.618 -3.409 1.433 -3.932 0.764 1.001 -3.656 -1.319 -2.360 ML 132 130 6 135 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 27 50 G C - - MP 137 136 6 141 6 2 2 38 57 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -3.940 -2.679 -3.899 1.607 -4.752 -4.582 -0.108 -4.357 -3.995 3.119 -4.375 0.671 -0.371 -3.888 -2.082 -2.814 ML 138 136 6 141 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 28 49 C G - - MP 143 142 6 147 6 2 2 36 55 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -4.148 -4.135 -3.973 -0.345 -2.801 -4.495 3.003 -3.550 -3.982 -0.174 -4.346 -2.126 1.288 -4.265 1.528 -2.837 ML 144 142 6 147 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 29 48 A U - - MP 149 148 6 153 6 2 2 34 53 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -3.956 -3.130 -3.960 3.291 -3.934 -5.105 0.361 -3.964 -3.895 0.802 -4.406 -0.678 0.608 -4.415 -1.598 -2.821 ML 150 148 6 153 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 30 47 G C - - MP 155 154 6 159 6 2 2 32 51 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -4.416 -3.020 -4.367 0.445 -4.759 -4.628 -0.107 -4.717 -4.303 3.472 -4.620 -0.703 0.246 -4.168 -2.134 -3.285 ML 156 154 6 159 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 31 46 g c - - MP 161 160 6 165 6 2 2 30 49 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -3.572 -2.538 -3.528 1.178 -3.993 -4.212 1.021 -3.947 -3.729 2.850 -4.101 1.038 0.211 -3.499 -1.457 -2.488 ML 162 160 6 165 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 32 45 u a - - MP 167 166 6 171 6 2 2 28 47 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -2.411 -2.511 -2.562 0.980 -1.117 -3.396 1.817 -2.698 -2.591 0.832 -3.142 -0.849 2.276 -2.713 -0.164 -0.398 ML 168 166 6 171 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 33 44 G C - - MP 173 172 6 177 6 2 2 26 45 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -3.703 -2.674 -3.667 0.895 -4.065 -4.397 0.378 -0.476 -3.801 3.200 -4.199 -0.340 0.027 -3.706 -1.577 -2.613 ML 174 172 6 177 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 6 177 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 34 43 u a - - MP 179 178 6 183 4 2 2 24 42 -7.405 -7.612 -0.166 -3.353 -3.563 -3.084 -3.569 0.577 -3.067 -4.326 1.329 -3.524 -3.588 2.204 -4.050 -0.872 2.402 -3.723 -0.705 -2.464 ML 180 178 6 183 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 182 178 6 183 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 183 183 5 183 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 184 184 6 184 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - A - - - ML 185 184 6 187 3 1 1 21 40 -8.275 -0.017 -6.930 1.825 -3.002 -2.573 -2.609 D 186 184 6 187 3 0 0 20 39 -7.154 -0.621 -1.546 IL 187 187 3 187 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 36 - A - - - ML 188 187 3 190 3 1 1 20 38 -8.393 -0.015 -7.047 1.550 -2.156 -0.885 -1.710 D 189 187 3 190 3 0 0 19 38 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 37 - U - - - ML 191 190 3 193 3 1 1 18 37 -8.393 -0.015 -7.047 -2.302 -2.161 -3.066 1.788 D 192 190 3 193 3 0 0 18 37 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 38 - G - - - ML 194 193 3 196 3 1 1 17 36 -8.393 -0.015 -7.047 -2.457 -3.792 1.862 -3.172 D 195 193 3 196 3 0 0 17 35 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 39 - G - - - ML 197 196 3 199 3 1 1 16 34 -8.393 -0.015 -7.047 -2.457 -3.792 1.862 -3.172 D 198 196 3 199 3 0 0 16 34 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 40 - G - - - ML 200 199 3 202 3 1 1 14 33 -8.393 -0.015 -7.047 -2.457 -3.792 1.862 -3.172 D 201 199 3 202 3 0 0 15 33 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 41 - G - - - ML 203 202 3 205 3 1 1 13 31 -8.393 -0.015 -7.047 -2.457 -3.792 1.862 -3.172 D 204 202 3 205 3 0 0 13 32 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 42 - G - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -2.457 -3.792 1.862 -3.172 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Chlorobi-1 ACC RF01696 DESC Chlorobi-1 RNA LENG 67 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:36:25 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 15 EFFN 5.394287 CKSUM 176643867 STATS LOCAL MSV -7.8658 0.71902 STATS LOCAL VITERBI -8.8663 0.71902 STATS LOCAL FORWARD -3.9041 0.71902 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34633 1.47564 1.13600 1.66033 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 0.00000 * 1 1.09400 2.65433 0.77918 1.99510 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 2 0.59579 2.47794 2.57443 1.24217 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 3 0.31919 2.32618 2.83663 2.14580 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 4 0.43660 2.20105 2.65921 1.75402 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 5 1.58581 1.41729 1.78446 0.95462 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 6 1.42248 2.12604 1.07611 1.20847 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 7 4.16655 0.08367 4.12409 3.02457 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 8 3.44859 0.30077 3.27863 1.65924 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 9 3.46098 2.01411 3.30473 0.22508 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 10 4.28845 0.07909 4.19952 3.05094 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 11 0.27326 3.92898 1.64698 3.61904 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 12 3.54412 0.26070 3.37014 1.79451 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 13 3.69202 4.67606 0.05038 4.20649 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 14 4.04182 0.06330 4.53650 3.40927 14 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 15 1.64796 0.42359 3.15269 2.20608 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 16 0.83356 0.98548 2.70422 2.07688 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 17 1.96012 3.52725 0.23196 3.30241 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 18 3.79738 2.62135 3.70270 0.12760 18 U - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 19 3.32927 4.36506 0.06732 4.10005 19 G - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 20 0.90914 3.46969 0.64116 3.23598 20 G - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 21 1.80917 3.45173 0.26775 3.23349 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 22 3.32839 4.36352 0.06741 4.09839 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 23 1.72498 1.87096 1.94116 0.64567 23 U - - > 1.38629 1.38629 1.38629 1.38629 0.12137 4.39169 2.28367 1.46634 0.26236 1.09861 0.40547 24 1.19010 1.92464 1.19323 1.39983 24 a - - > 1.38629 1.38629 1.38629 1.38629 0.02757 4.29790 4.29790 1.46634 0.26236 0.21749 1.63237 25 3.30760 4.26749 0.06734 4.23378 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 26 0.58239 2.83302 1.42858 1.94525 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 27 1.54865 2.99638 0.38766 2.83265 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 28 3.26130 0.57195 3.05596 1.04936 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 29 0.29060 2.94427 2.35099 2.26076 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 30 2.63496 3.19287 0.21960 2.47241 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 31 1.89182 2.05556 0.45469 2.44718 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 32 1.93909 1.37124 1.98117 0.76687 32 u - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 33 2.29085 2.15726 0.32525 2.79969 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 34 2.49277 2.04937 1.06891 0.80941 34 u - - < 1.38629 1.38629 1.38629 1.38629 0.12137 4.39169 2.28367 1.46634 0.26236 1.09861 0.40547 35 0.06167 4.11248 3.76384 3.89986 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 4.29790 4.29790 1.46634 0.26236 0.21749 1.63237 36 0.23422 3.33311 2.05724 3.09390 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 37 3.61855 3.42801 4.16146 0.07781 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 38 3.69202 4.67606 0.05038 4.20649 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 39 3.69202 4.67606 0.05038 4.20649 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 40 3.69202 4.67606 0.05038 4.20649 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 41 3.69202 4.67606 0.05038 4.20649 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 42 3.69202 4.67606 0.05038 4.20649 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 43 0.86984 1.13374 1.88494 2.23197 43 a - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 44 3.04887 0.36958 2.70825 1.63522 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 45 0.90581 2.15403 1.31126 1.55927 45 a - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 46 2.70350 0.70595 1.93992 1.21850 46 c - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 47 2.58764 0.24793 3.02061 2.34740 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 48 2.37222 2.66877 2.76490 0.25566 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 49 1.94959 3.22041 0.26274 3.02029 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 50 3.08808 0.54572 2.80433 1.15696 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 51 2.04407 2.12931 2.64286 0.38504 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 52 4.39677 0.08220 4.14285 2.98153 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.44276 4.39169 1.06317 1.46634 0.26236 1.09861 0.40547 53 0.11680 3.50246 3.20151 3.23377 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.86019 0.58276 3.98675 0.33267 1.26234 0.06924 2.70462 54 1.25144 2.02732 1.21650 1.25192 57 g - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 55 0.75143 1.61625 1.66205 1.96671 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 56 0.70896 1.95787 1.88183 1.54003 59 a - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 57 0.65315 2.39083 1.79587 1.50481 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 58 0.35112 2.78292 2.12964 2.15966 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 59 0.17549 3.46868 2.39415 3.25583 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 60 0.05186 4.28123 3.92287 4.07851 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 61 0.41262 3.15422 1.43767 2.84838 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 62 1.59355 2.42871 0.47054 2.47718 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 63 1.98383 0.41535 2.52408 2.10193 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 64 1.84025 2.98127 0.37515 2.27004 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 65 1.71959 2.46344 0.42071 2.53659 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.02507 4.39169 4.39169 1.46634 0.26236 1.09861 0.40547 66 2.90594 0.32802 3.54924 1.62859 69 C - - : 1.38629 1.38629 1.38629 1.38629 0.07980 4.39169 2.74391 1.46634 0.26236 1.09861 0.40547 67 1.70535 0.82134 2.66554 1.17477 70 c - - : 1.38629 1.38629 1.38629 1.38629 0.01332 4.32521 * 1.46634 0.26236 0.00000 * //