INFERNAL1/a [1.1.4 | Dec 2020] NAME Bacillus-plasmid ACC RF01691 DESC Bacillus-plasmid RNA STATES 187 NODES 54 CLEN 61 W 146 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:36:07 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 31 EFFN 6.202271 CKSUM 3666427543 NULL 0.000 0.000 0.000 0.000 GA 31.00 TC 31.30 NC 30.80 EFP7GF -11.7276 0.71907 ECMLC 0.65900 -5.50232 3.07360 1600000 341674 0.003512 ECMGC 0.46746 -15.70929 -3.56832 1600000 116641 0.003429 ECMLI 0.65209 -4.18092 3.64895 1600000 197960 0.006062 ECMGI 0.49345 -11.87569 -0.91103 1600000 89502 0.004469 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 146 253 -7.945 -9.190 -0.038 -5.644 IL 1 1 2 1 4 1 13 147 254 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 147 254 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 80 - a - - MR 3 2 3 5 3 1 14 146 253 -9.392 -0.009 -7.710 0.547 -0.757 -0.218 0.121 D 4 2 3 5 3 0 9 144 251 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 13 146 253 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 79 - c - - MR 6 5 3 8 3 1 13 145 252 -9.392 -0.009 -7.710 -0.840 0.965 -2.203 0.347 D 7 5 3 8 3 0 8 143 250 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 12 145 252 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 78 - a - - MR 9 8 3 11 3 1 12 144 251 -9.392 -0.009 -7.710 0.962 -0.380 -0.372 -0.969 D 10 8 3 11 3 0 7 142 249 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 11 144 251 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 77 - u - - MR 12 11 3 14 3 1 12 143 250 -9.392 -0.009 -7.710 0.251 -0.152 -0.729 0.386 D 13 11 3 14 3 0 7 141 248 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 11 143 250 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 76 - c - - MR 15 14 3 17 3 1 11 142 249 -9.392 -0.009 -7.710 -0.230 0.935 -0.933 -0.489 D 16 14 3 17 3 0 6 140 247 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 10 142 250 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 75 - A - - MR 18 17 3 20 3 1 10 141 248 -9.392 -0.082 -4.225 1.615 -2.255 -1.823 -1.172 D 19 17 3 20 3 0 5 139 246 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 10 141 249 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 74 - c - - MR 21 20 3 23 3 1 11 140 247 -9.320 -0.010 -7.638 -0.187 0.497 -1.729 0.495 D 22 20 3 23 3 0 5 138 246 -7.264 -0.647 -1.494 IR 23 23 3 23 3 1 8 140 248 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 73 - U - - MR 24 23 3 26 3 1 10 139 246 -9.392 -0.009 -7.710 -0.693 -0.237 -2.029 1.194 D 25 23 3 26 3 0 3 137 244 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 8 139 247 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 72 - u - - MR 27 26 3 29 5 1 10 138 245 -8.081 -0.020 -7.897 -8.109 -9.001 -0.763 0.323 -1.436 0.840 D 28 26 3 29 5 0 2 136 243 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 6 138 245 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 1 71 u a - - MP 30 29 3 34 6 2 10 137 244 -9.656 -4.689 -0.070 -8.372 -8.652 -9.047 -3.433 -3.227 -3.507 0.887 -2.961 -4.316 1.530 -3.467 -3.518 1.844 -4.030 -1.154 2.349 -3.638 0.210 -2.422 ML 31 29 3 34 6 1 4 135 242 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 4 134 242 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 0 129 237 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 5 136 243 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 6 136 243 -2.816 -0.357 -6.327 -4.495 -5.601 0.000 0.000 0.000 0.000 [ MATP 11 ] 2 69 g c - - MP 36 35 6 40 6 2 10 135 242 -9.656 -9.596 -0.014 -8.372 -8.652 -9.047 -3.584 -3.031 -3.603 1.112 -3.324 -4.366 2.029 -3.706 -3.701 2.354 -4.161 -0.390 1.295 -3.660 -0.916 -2.520 ML 37 35 6 40 6 1 4 133 240 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 4 132 240 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 128 235 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 5 134 241 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 5 134 241 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 3 68 u a - - MP 42 41 6 46 6 2 10 133 240 -9.656 -9.596 -0.014 -8.372 -8.652 -9.047 -3.110 -3.080 -0.569 1.589 -2.877 -4.082 1.116 -3.323 -3.248 0.412 -3.785 -1.228 2.765 -3.420 -0.755 -2.296 ML 43 41 6 46 6 1 4 131 238 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 3 130 238 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 126 233 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 5 132 239 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 5 132 239 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 4 67 G C - - MP 48 47 6 52 6 2 10 131 238 -9.656 -9.596 -0.014 -8.372 -8.652 -9.047 -5.927 -3.821 -6.154 -0.682 -7.204 -5.381 -2.167 -6.539 -5.205 3.758 -5.491 0.185 -2.438 -5.347 -4.271 -5.019 ML 49 47 6 52 6 1 3 129 236 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 3 128 236 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 124 231 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 4 130 237 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 5 130 237 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 5 66 U A - - MP 54 53 6 58 6 2 9 129 236 -9.656 -9.596 -0.014 -8.372 -8.652 -9.047 -7.153 -7.018 -6.662 -3.259 -5.185 -6.970 -0.891 -6.021 -6.639 -3.269 -6.907 -4.909 3.901 -7.106 -2.765 -4.784 ML 55 53 6 58 6 1 3 127 234 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 126 234 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 122 229 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 4 128 235 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 4 128 235 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 6 65 C G - - MP 60 59 6 64 6 2 9 127 234 -9.656 -9.596 -0.014 -8.372 -8.652 -9.047 -7.255 -7.380 -6.455 -3.541 -2.286 -6.525 3.914 -6.091 -6.821 -3.434 -6.535 -5.505 -1.798 -7.199 -2.897 -5.620 ML 61 59 6 64 6 1 3 125 232 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 3 125 232 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 121 228 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 4 126 234 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 4 126 233 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 7 64 A U - - MP 66 65 6 70 6 2 8 125 232 -9.656 -9.596 -0.014 -8.372 -8.652 -9.047 -7.129 -6.006 -2.959 3.940 -8.104 -9.093 -3.920 -5.500 -6.975 -2.482 -7.554 -3.246 -4.240 -8.112 -5.780 -5.093 ML 67 65 6 70 6 1 2 123 230 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 2 123 230 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 119 227 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 3 124 232 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 3 124 231 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 8 63 A U - - MP 72 71 6 76 6 2 6 123 230 -9.656 -9.596 -0.014 -8.372 -8.652 -9.047 -5.825 -4.552 -5.387 3.881 -7.062 -8.384 -2.671 -5.311 -5.583 -1.146 -6.205 -1.834 -3.022 -7.107 -4.580 -4.354 ML 73 71 6 76 6 1 2 121 229 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 2 121 228 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 118 226 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 3 122 230 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 3 122 229 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 9 62 C G - - MP 78 77 6 82 4 2 5 121 228 -8.094 -8.301 -0.024 -6.715 -5.418 -5.448 -4.993 -1.525 -3.513 -5.320 3.500 -4.357 -5.026 -1.384 -5.270 -3.414 1.599 -5.399 -1.169 -3.817 ML 79 77 6 82 4 1 1 120 227 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 119 226 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 118 225 -4.568 -4.250 -2.265 -0.520 IL 82 82 5 82 4 1 3 121 228 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 2 121 228 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 10 - G - - - ML 84 83 6 86 3 1 4 119 226 -9.053 -0.010 -7.707 -3.552 -4.995 1.938 -4.292 D 85 83 6 86 3 0 0 116 224 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 2 120 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 11 - G - - - ML 87 86 3 89 3 1 3 118 225 -4.457 -0.074 -7.707 -2.266 -4.248 1.872 -3.667 D 88 86 3 89 3 0 0 115 223 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 118 226 -1.723 -0.620 -4.423 0.000 0.000 0.000 0.000 [ MATL 21 ] 13 - U - - - ML 90 89 3 92 3 1 3 117 224 -9.053 -0.010 -7.707 -3.472 -3.167 -4.259 1.905 D 91 89 3 92 3 0 0 114 221 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 118 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 14 - A - - - ML 93 92 3 95 3 1 3 116 223 -9.053 -0.010 -7.707 1.938 -4.434 -3.904 -4.150 D 94 92 3 95 3 0 0 113 220 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 117 224 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - a - - - ML 96 95 3 98 3 1 2 115 222 -9.053 -0.010 -7.707 0.593 0.066 -0.221 -0.768 D 97 95 3 98 3 0 0 112 219 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 116 223 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - C - - - ML 99 98 3 101 3 1 2 114 221 -9.053 -0.010 -7.707 -1.577 1.206 -0.084 -1.274 D 100 98 3 101 3 0 0 110 217 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 114 222 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - G - - - ML 102 101 3 104 3 1 2 113 220 -9.053 -0.010 -7.707 -1.309 0.168 1.074 -1.442 D 103 101 3 104 3 0 0 106 214 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 113 221 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - G - - - ML 105 104 3 107 3 1 1 112 219 -2.574 -0.633 -2.416 -2.763 -3.912 1.850 -2.470 D 106 104 3 107 3 0 0 97 204 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 122 229 -0.248 -2.721 -7.344 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - A - - - ML 108 107 3 110 3 1 1 67 117 -8.762 -0.186 -3.078 1.691 -2.737 -1.217 -2.385 D 109 107 3 110 3 0 0 64 114 -8.373 -3.886 -0.106 IL 110 110 3 110 3 1 1 68 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - C - - - ML 111 110 3 113 3 1 1 66 116 -1.075 -1.053 -4.526 -0.482 1.042 -0.825 -0.599 D 112 110 3 113 3 0 0 64 114 -8.852 -0.349 -2.233 IL 113 113 3 113 3 1 1 66 116 -2.870 -0.248 -5.570 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - - - ML 114 113 3 116 3 1 1 65 115 -8.961 -0.010 -7.615 -0.823 -3.209 1.666 -2.701 D 115 113 3 116 3 0 0 60 110 -7.318 -2.831 -0.229 IL 116 116 3 116 3 1 1 65 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 117 116 3 119 3 1 1 64 114 -8.961 -0.010 -7.615 1.402 -0.704 -1.446 -1.408 D 118 116 3 119 3 0 0 59 109 -7.318 -2.831 -0.229 IL 119 119 3 119 3 1 1 64 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 34 - a - - - ML 120 119 3 122 3 1 1 63 113 -8.961 -0.010 -7.615 0.096 -0.109 0.065 -0.061 D 121 119 3 122 3 0 0 57 107 -7.318 -2.831 -0.229 IL 122 122 3 122 3 1 1 63 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 35 - C - - - ML 123 122 3 125 3 1 1 62 112 -1.798 -0.499 -7.615 -0.752 1.087 -0.466 -0.842 D 124 122 3 125 3 0 0 50 100 -7.318 -2.831 -0.229 IL 125 125 3 125 3 1 1 64 114 -0.531 -1.742 -6.809 0.000 0.000 0.000 0.000 [ MATL 33 ] 41 - g - - - ML 126 125 3 128 3 1 1 34 53 -8.961 -0.010 -7.615 0.305 -1.656 0.790 -0.476 D 127 125 3 128 3 0 0 32 51 -7.318 -2.831 -0.229 IL 128 128 3 128 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - a - - - ML 129 128 3 131 3 1 1 33 52 -8.961 -0.049 -4.986 0.871 -1.340 -0.572 0.142 D 130 128 3 131 3 0 0 31 50 -7.318 -2.831 -0.229 IL 131 131 3 131 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - A - - - ML 132 131 3 134 3 1 1 32 50 -8.923 -0.011 -7.577 1.105 -1.022 -0.368 -0.782 D 133 131 3 134 3 0 0 30 49 -7.606 -1.028 -0.987 IL 134 134 3 134 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - G - - - ML 135 134 3 137 3 1 1 31 49 -9.002 -0.010 -7.656 -0.853 -1.868 1.483 -1.404 D 136 134 3 137 3 0 0 29 48 -6.927 -2.440 -0.308 IL 137 137 3 137 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 45 - g - - - ML 138 137 3 140 3 1 1 29 48 -9.002 -0.010 -7.656 -0.241 -0.468 0.284 0.279 D 139 137 3 140 3 0 0 28 47 -6.927 -2.440 -0.308 IL 140 140 3 140 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 46 - G - - - ML 141 140 3 143 3 1 1 28 47 -9.002 -0.010 -7.656 -1.482 -2.791 1.652 -1.494 D 142 140 3 143 3 0 0 27 46 -6.927 -2.440 -0.308 IL 143 143 3 143 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 47 - A - - - ML 144 143 3 146 3 1 1 27 46 -9.002 -0.049 -5.001 1.046 -0.659 -1.200 -0.208 D 145 143 3 146 3 0 0 26 45 -6.927 -0.759 -1.319 IL 146 146 3 146 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 48 - G - - - ML 147 146 3 149 3 1 1 26 45 -9.016 -0.010 -7.670 -0.115 -1.794 1.316 -1.742 D 148 146 3 149 3 0 0 25 44 -6.758 -0.889 -1.150 IL 149 149 3 149 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 49 - G - - - ML 150 149 3 152 3 1 1 25 44 -9.053 -0.242 -2.713 -0.876 -0.598 1.227 -1.143 D 151 149 3 152 3 0 0 24 43 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 50 - G - - - ML 153 152 3 155 3 1 1 24 43 -8.822 -0.011 -7.476 -3.205 -4.613 1.921 -3.947 D 154 152 3 155 3 0 0 22 41 -8.139 -3.652 -0.125 IL 155 155 3 155 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 51 - A - - - ML 156 155 3 158 3 1 1 23 42 -8.822 -0.011 -7.476 1.755 -2.966 -1.570 -2.651 D 157 155 3 158 3 0 0 22 40 -8.139 -3.652 -0.125 IL 158 158 3 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 52 - G - - - ML 159 158 3 161 3 1 1 22 40 -8.822 -0.011 -7.476 -1.942 -2.053 1.731 -2.477 D 160 158 3 161 3 0 0 21 40 -8.139 -0.280 -2.531 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 53 - g - - - ML 162 161 3 164 3 1 1 21 39 -9.053 -0.010 -7.707 0.157 0.142 0.260 -0.774 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 54 - A - - - ML 165 164 3 167 3 1 1 19 38 -9.053 -0.010 -7.707 1.381 -1.910 -2.034 -0.175 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 55 - U - - - ML 168 167 3 170 3 1 1 18 37 -2.574 -0.274 -7.707 -3.472 -3.167 -4.259 1.905 D 169 167 3 170 3 0 0 17 35 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 37 -2.306 -0.383 -5.006 0.000 0.000 0.000 0.000 [ MATL 48 ] 57 - A - - - ML 171 170 3 173 3 1 1 17 35 -9.053 -0.010 -7.707 1.938 -4.434 -3.904 -4.150 D 172 170 3 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 58 - A - - - ML 174 173 3 176 3 1 1 15 34 -9.053 -0.010 -7.707 1.938 -4.434 -3.904 -4.150 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 59 - G - - - ML 177 176 3 179 3 1 1 14 32 -9.053 -0.010 -7.707 -3.552 -4.995 1.938 -4.292 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 60 - G - - - ML 180 179 3 182 3 1 1 12 31 -9.053 -0.010 -7.707 -3.552 -4.995 1.938 -4.292 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 61 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.938 -4.434 -3.904 -4.150 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Bacillus-plasmid ACC RF01691 DESC Bacillus-plasmid RNA LENG 61 MAXL 201 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:36:08 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 31 EFFN 8.692261 CKSUM 3666427543 STATS LOCAL MSV -8.0666 0.71907 STATS LOCAL VITERBI -8.6178 0.71907 STATS LOCAL FORWARD -3.8137 0.71907 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.19442 1.70600 1.18812 1.55715 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 0.00000 * 1 2.07795 1.72388 1.33970 0.83352 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 2 1.91307 1.29155 0.95276 1.65102 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 3 1.32347 2.22196 2.49765 0.61043 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 4 3.39405 4.43707 0.06030 4.33378 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 5 5.10156 3.85817 5.09078 0.03392 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 6 5.10887 0.03230 5.09198 3.93224 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 7 0.02272 5.38464 4.38587 5.21732 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 8 0.05168 4.77854 3.44814 4.58973 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 9 3.94756 0.29083 3.79033 1.55843 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 10 4.20839 5.25341 0.02947 4.71700 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 11 3.10319 4.68477 0.07065 4.26367 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06455 2.90324 4.87074 0.25942 1.47622 1.09861 0.40547 12 4.21116 3.95908 4.76454 0.04336 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 13 0.02832 4.88415 4.50068 4.68278 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 14 0.94875 1.29287 1.52601 2.11284 15 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 15 2.90953 0.46033 1.41399 2.64151 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 16 2.62368 1.21033 0.56991 2.75222 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 17 3.63858 4.45334 0.08290 3.17903 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.49799 1.67540 1.58467 2.28833 0.10696 1.09861 0.40547 18 0.17733 3.60969 2.27585 3.41955 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.15436 4.65090 2.01377 1.46634 0.26236 3.35820 0.03542 19 1.83141 0.57149 1.99745 1.97007 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.89021 0.62084 2.95765 0.04009 3.23654 0.18126 1.79710 20 2.00960 3.91218 0.20109 3.57114 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01657 4.80188 4.80188 1.46634 0.26236 2.45771 0.08952 21 0.36104 1.87487 2.52966 2.65941 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01657 4.80188 4.80188 1.46634 0.26236 2.45771 0.08952 22 1.33905 1.43435 1.30960 1.47095 34 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01657 4.80188 4.80188 1.46634 0.26236 2.45771 0.08952 23 2.05960 0.54784 1.70321 2.18745 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.39559 1.14413 4.80188 1.39837 0.28369 2.45771 0.08952 24 1.17615 2.74116 0.77669 1.78908 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01657 4.80188 4.80188 1.46634 0.26236 2.45771 0.08952 25 0.74119 2.47496 1.80624 1.29092 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04622 4.80188 3.29806 1.46634 0.26236 2.45771 0.08952 26 0.57011 2.15662 1.64736 2.06939 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01706 4.77272 4.77272 1.46634 0.26236 0.60809 0.78612 27 2.07831 2.78930 0.31365 2.49355 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01606 4.83232 4.83232 1.46634 0.26236 2.06872 0.13507 28 1.61552 1.72114 1.14282 1.19260 45 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01606 4.83232 4.83232 1.46634 0.26236 2.06872 0.13507 29 2.56371 3.55908 0.21005 2.47729 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01606 4.83232 4.83232 1.46634 0.26236 2.06872 0.13507 30 0.61565 1.87100 2.31591 1.57472 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04544 4.83232 3.31157 1.46634 0.26236 0.29128 1.37558 31 1.49771 2.74234 0.42317 2.86519 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01589 4.84294 4.84294 1.46634 0.26236 0.36262 1.19023 32 2.15613 1.78407 0.47241 2.37759 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.19237 4.87074 1.78779 1.46634 0.26236 1.09861 0.40547 33 3.98389 4.99957 0.03720 4.49513 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69678 4.69678 1.46634 0.26236 3.17064 0.04288 34 0.13739 3.76909 2.55074 3.60193 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69678 4.69678 1.46634 0.26236 3.17064 0.04288 35 3.04761 2.86232 0.14712 3.43583 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01842 4.69678 4.69678 1.46634 0.26236 0.08769 2.47749 36 1.29454 1.23539 1.15507 2.11844 53 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 37 0.37692 2.99026 3.09339 1.52138 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 38 4.21116 3.95908 4.76454 0.04336 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.21679 1.67540 4.87074 0.07998 2.56565 1.09861 0.40547 39 0.02832 4.88415 4.50068 4.68278 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 40 0.02832 4.88415 4.50068 4.68278 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 41 4.20839 5.25341 0.02947 4.71700 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 42 4.20839 5.25341 0.02947 4.71700 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 43 0.02832 4.88415 4.50068 4.68278 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 44 1.64742 3.94256 0.26985 3.70662 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 45 4.78501 3.86888 4.59145 0.04017 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 46 5.44239 4.80291 4.49125 0.02403 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 47 3.65071 5.22461 0.03892 4.98789 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 48 0.03969 5.27844 3.66558 4.80101 66 A - - > 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 49 4.46455 0.13819 4.29038 2.26470 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 50 0.65251 2.71254 1.73239 1.44378 68 A - - > 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 51 1.80578 1.06205 1.20897 1.65339 69 c - - > 1.38629 1.38629 1.38629 1.38629 0.08683 2.58368 4.87074 0.19205 1.74449 1.09861 0.40547 52 1.01276 1.41554 1.40259 1.91033 71 a - - > 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 53 2.03729 1.11951 2.48517 0.77681 72 u - - : 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 54 1.95715 1.55238 3.03656 0.51250 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.07225 4.87074 2.78004 1.46634 0.26236 1.09861 0.40547 55 1.55320 0.98713 2.78828 1.03773 74 c - - : 1.38629 1.38629 1.38629 1.38629 0.01635 4.81483 4.81483 1.46634 0.26236 0.22090 1.61845 56 0.22707 3.19734 2.80416 2.28568 75 A - - : 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 57 1.59197 0.66886 2.07048 1.84479 76 C - - : 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 58 1.20979 1.48230 1.92018 1.11461 77 u - - : 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 59 0.67087 1.63389 1.64712 2.29298 78 A - - : 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 60 2.08244 0.65752 3.18434 1.15254 79 C - - : 1.38629 1.38629 1.38629 1.38629 0.01545 4.87074 4.87074 1.46634 0.26236 1.09861 0.40547 61 0.98639 1.95786 1.52662 1.31434 80 a - - : 1.38629 1.38629 1.38629 1.38629 0.00776 4.86304 * 1.46634 0.26236 0.00000 * //