INFERNAL1/a [1.1.4 | Dec 2020] NAME Bacillaceae-1 ACC RF01690 DESC Bacillaceae-1 RNA STATES 210 NODES 56 CLEN 67 W 83 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:36:05 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 95 EFFN 7.059479 CKSUM 2177017019 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.30 NC 34.70 EFP7GF -17.5361 0.71900 ECMLC 0.53290 -10.40747 0.88512 1600000 492799 0.002435 ECMGC 0.40449 -18.29716 -4.86702 1600000 91471 0.004373 ECMLI 0.54042 -7.48300 2.58583 1600000 276917 0.004333 ECMGI 0.45288 -12.91790 -1.65313 1600000 65711 0.006087 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 83 102 -8.245 -8.452 -0.101 -4.021 IL 1 1 2 1 4 2 26 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 2 25 83 102 -9.122 -0.009 -7.777 0.798 -0.302 -0.610 -0.330 D 4 2 3 5 3 0 21 81 101 -7.257 -1.432 -0.683 IL 5 5 3 5 3 1 25 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 2 24 82 101 -9.155 -0.009 -7.809 0.535 -0.819 0.097 -0.129 D 7 5 3 8 3 0 20 80 100 -6.891 -0.784 -1.283 IL 8 8 3 8 3 1 23 84 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 2 23 81 100 -9.199 -0.009 -7.853 0.237 -0.597 -0.075 0.276 D 10 8 3 11 3 0 19 79 99 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 23 83 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 2 22 80 99 -9.199 -0.009 -7.853 0.650 -0.490 -0.537 0.042 D 13 11 3 14 3 0 18 78 98 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 22 82 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 21 78 98 -9.199 -0.009 -7.853 1.298 -1.448 -0.765 -0.772 D 16 14 3 17 3 0 17 77 97 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 21 81 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 20 77 97 -9.199 -0.009 -7.853 1.214 -1.163 -1.271 -0.287 D 19 17 3 20 3 0 17 76 96 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 80 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 19 76 96 -9.199 -0.009 -7.853 -1.003 -1.996 1.360 -0.550 D 22 20 3 23 3 0 16 75 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 18 75 95 -5.411 -0.041 -7.853 -1.803 -3.318 1.759 -2.125 D 25 23 3 26 3 0 16 74 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 77 96 -1.604 -0.689 -4.304 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - - - ML 27 26 3 29 3 1 17 74 93 -9.199 -0.031 -5.693 1.746 -2.234 -2.215 -2.200 D 28 26 3 29 3 0 15 73 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 17 77 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - a - - - ML 30 29 3 32 2 1 16 73 92 -9.725 -0.002 0.825 -0.915 -0.879 0.208 D 31 29 3 32 2 0 15 72 91 -8.474 -0.004 IL 32 32 3 32 2 1 16 74 93 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 33 32 3 34 153 0 15 72 91 [ BEGL 12 ] - - - - - - S 34 33 1 35 4 0 2 54 73 -0.026 -7.629 -7.036 -7.676 [ MATP 13 ] 12 56 c g - - MP 35 34 1 39 6 2 5 54 73 -9.745 -9.685 -0.014 -8.461 -8.741 -9.136 -2.748 -2.837 -2.902 1.053 1.398 -3.748 2.176 -3.024 -1.786 0.705 -3.479 -0.883 1.324 -3.052 -0.463 -1.989 ML 36 34 1 39 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 1 39 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 1 39 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 55 g c - - MP 41 40 6 45 6 2 5 52 71 -9.745 -9.685 -0.024 -6.693 -8.741 -9.136 -3.650 -1.387 -3.610 1.453 -3.972 -4.302 1.076 -4.045 -3.865 2.801 -4.248 -0.534 1.042 -3.575 -1.519 -2.619 ML 42 40 6 45 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 54 c g - - MP 47 46 6 51 6 2 5 50 69 -9.735 -9.675 -0.014 -8.451 -8.731 -9.126 -3.299 -3.283 -2.831 0.586 -2.073 -4.257 2.665 -2.407 -3.387 0.918 -3.930 -1.323 1.966 -3.571 -0.525 -2.344 ML 48 46 6 51 6 1 1 48 67 -6.441 -6.787 -1.068 -1.195 -6.637 -4.166 0.138 -0.371 -0.448 0.478 MR 49 46 6 51 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 53 a u - - MP 53 52 6 57 6 2 4 48 67 -9.745 -9.685 -0.014 -8.461 -8.741 -9.136 -2.030 -2.209 -2.218 2.058 -1.519 -1.106 1.958 -1.820 -2.278 0.851 -2.847 -0.800 1.034 -2.359 -0.317 -1.286 ML 54 52 6 57 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 52 G C - - MP 59 58 6 63 6 2 4 46 65 -6.609 -9.685 -0.027 -8.461 -8.741 -9.136 -4.065 -2.902 -3.970 0.651 -4.608 -2.160 -0.013 -4.507 -4.243 3.228 -4.556 -0.611 1.180 -3.228 -1.984 -2.960 ML 60 58 6 63 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 45 64 -2.767 -3.030 -0.643 -4.685 -5.461 -5.121 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 18 51 G C - - MP 65 64 6 69 6 2 4 44 63 -9.745 -9.685 -0.014 -8.461 -8.741 -9.136 -4.061 -2.788 -3.918 1.865 -4.855 -4.519 0.297 -4.546 -4.290 3.089 -4.571 -0.448 -0.354 -2.012 -2.069 -2.893 ML 66 64 6 69 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 19 50 C G - - MP 71 70 6 75 4 2 2 42 61 -8.245 -8.452 -0.021 -6.866 -5.276 -5.255 -4.959 -1.307 -1.445 -5.375 3.445 -4.379 -4.965 -1.146 -5.265 -3.154 1.599 -5.313 -1.207 -3.759 ML 72 70 6 75 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 77 76 6 79 3 1 1 39 58 -9.199 -0.009 -7.853 -3.703 -3.374 -4.495 1.919 D 78 76 6 79 3 0 0 38 57 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 80 79 3 82 3 1 1 38 57 -9.199 -0.026 -5.944 1.947 -4.670 -4.131 -4.389 D 81 79 3 82 3 0 0 37 56 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 83 82 3 85 3 1 1 37 56 -3.527 -0.165 -5.544 1.910 -4.113 -3.110 -3.889 D 84 82 3 85 3 0 0 36 54 -6.507 -1.144 -0.898 IL 85 85 3 85 3 1 1 38 56 -1.987 -0.496 -4.687 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 86 85 3 88 3 1 1 36 55 -9.174 -0.009 -7.828 0.228 -1.509 1.108 -1.637 D 87 85 3 88 3 0 0 35 54 -6.625 -2.138 -0.391 IL 88 88 3 88 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - a - - - ML 89 88 3 91 3 1 1 35 53 -9.174 -0.042 -5.227 0.435 -1.224 -0.107 0.369 D 90 88 3 91 3 0 0 34 53 -6.625 -1.013 -1.016 IL 91 91 3 91 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - u - - - ML 92 91 3 94 3 1 1 34 52 -9.167 -0.085 -4.165 0.127 -0.337 -0.272 0.365 D 93 91 3 94 3 0 0 33 52 -6.737 -0.907 -1.128 IL 94 94 3 94 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 95 94 3 97 3 1 1 33 51 -2.029 -0.414 -7.779 -1.345 1.536 -2.686 -0.858 D 96 94 3 97 3 0 0 32 50 -1.281 -1.469 -2.138 IL 97 97 3 97 3 1 1 32 51 -3.545 -0.158 -5.784 0.000 0.000 0.000 0.000 [ MATR 27 ] - 49 - C - - MR 98 97 3 100 3 1 1 31 50 -9.534 -0.008 -7.851 -2.295 1.831 -3.984 -2.515 D 99 97 3 100 3 0 0 30 48 -6.390 -1.568 -0.620 IR 100 100 3 100 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 48 - A - - MR 101 100 3 103 3 1 1 30 49 -9.534 -0.135 -3.505 1.841 -3.608 -2.065 -3.381 D 102 100 3 103 3 0 0 29 48 -6.390 -1.568 -0.620 IR 103 103 3 103 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 47 - A - - MR 104 103 3 106 5 1 1 29 48 -2.108 -0.414 -7.911 -8.123 -6.681 1.873 -3.709 -2.548 -3.472 D 105 103 3 106 5 0 0 29 47 -1.051 -1.622 -3.894 -5.325 -3.319 IR 106 106 3 106 5 1 1 29 48 -2.782 -0.285 -7.520 -5.688 -6.794 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 43 g c - - MP 107 106 3 111 6 2 2 28 46 -9.738 -9.678 -0.014 -8.454 -8.734 -9.129 -2.516 -0.834 -2.652 0.880 -1.579 -2.151 1.489 -3.009 -2.764 2.497 -3.288 -0.336 1.046 -2.744 -0.758 -1.837 ML 108 106 3 111 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 3 111 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 3 111 6 0 0 24 43 -9.218 -7.917 -2.418 -4.396 -4.413 -0.489 IL 111 111 5 111 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 42 c g - - MP 113 112 6 117 6 2 2 26 44 -9.745 -9.685 -0.014 -8.461 -8.741 -9.136 -3.968 -3.849 -3.998 1.048 -3.109 -4.781 2.955 -3.728 -3.942 0.211 -3.157 -1.694 1.723 -4.188 -0.716 -2.799 ML 114 112 6 117 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 41 c g - - MP 119 118 6 123 6 2 2 24 42 -9.745 -9.685 -0.014 -8.461 -8.741 -9.136 -3.913 -3.736 -3.955 0.398 -3.082 -4.769 2.899 -2.527 -3.889 1.340 -4.402 -1.526 1.512 -4.127 -0.657 -2.723 ML 120 118 6 123 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 40 a u - - MP 125 124 6 129 6 2 2 22 40 -9.745 -9.685 -0.014 -8.461 -8.741 -9.136 -4.417 -0.644 -4.404 2.978 -5.498 -5.442 -0.894 -4.814 -4.469 2.353 -4.919 -0.267 -1.107 -4.595 -2.827 -3.271 ML 126 124 6 129 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 39 C G - - MP 131 130 6 135 4 2 2 20 38 -8.245 -8.452 -0.021 -6.866 -7.512 -7.529 -4.501 -3.660 -4.045 -6.843 3.933 -6.646 -7.232 -3.508 -6.799 -5.511 -2.236 -7.562 -2.730 -6.040 ML 132 130 6 135 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 134 130 6 135 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 135 135 5 135 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 136 136 6 136 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - G - - - ML 137 136 6 139 3 1 1 17 35 -9.199 -0.009 -7.853 0.290 -2.518 1.205 -1.752 D 138 136 6 139 3 0 0 17 35 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - - - ML 140 139 3 142 3 1 1 15 34 -9.199 -0.009 -7.853 -3.703 -3.374 -4.495 1.919 D 141 139 3 142 3 0 0 16 34 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - C - - - ML 143 142 3 145 3 1 1 14 32 -9.199 -0.009 -7.853 -2.968 1.879 -4.228 -2.836 D 144 142 3 145 3 0 0 15 33 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - C - - - ML 146 145 3 148 3 1 1 12 31 -9.199 -0.009 -7.853 -2.349 1.680 -1.587 -1.907 D 147 145 3 148 3 0 0 13 32 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - U - - - ML 149 148 3 151 2 1 1 1 1 * 0.000 -3.151 -2.541 -3.904 1.867 D 150 148 3 151 2 0 0 0 0 * 0.000 IL 151 151 3 151 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 152 151 3 -1 0 0 0 0 0 [ BEGR 41 ] - - - - - - S 153 33 1 154 3 0 0 31 49 -9.199 -0.146 -3.400 IL 154 154 2 154 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 57 - U - - - ML 155 154 2 157 3 1 1 31 49 -9.062 -0.415 -2.012 -2.036 -1.429 -2.271 1.668 D 156 154 2 157 3 0 0 29 48 -7.743 -3.256 -0.167 IL 157 157 3 157 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 58 - G - - - ML 158 157 3 160 3 1 1 30 48 -8.660 -0.013 -7.314 -0.741 -0.774 1.261 -1.249 D 159 157 3 160 3 0 0 29 47 -9.134 -0.134 -3.525 IL 160 160 3 160 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 59 - A - - - ML 161 160 3 163 5 1 1 29 47 -8.218 -0.435 -2.398 -3.940 -9.137 1.409 -1.052 -1.613 -0.902 D 162 160 3 163 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 163 163 3 163 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 60 75 c g - - MP 164 163 3 168 6 2 2 28 46 -9.488 -9.427 -0.016 -8.203 -8.483 -8.878 -1.503 -1.934 -0.960 0.977 -1.295 -1.497 2.233 -2.257 -1.988 0.816 -2.560 -0.595 1.316 -2.065 -0.121 -0.435 ML 165 163 3 168 6 1 1 28 46 -8.073 -0.681 -2.488 -2.532 -8.269 -5.799 0.226 -0.377 -0.727 0.542 MR 166 163 3 168 6 1 1 26 45 -7.781 -6.510 -0.713 -6.489 -1.623 -4.702 1.255 -1.180 -0.920 -0.635 D 167 163 3 168 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 27 46 -3.397 -0.229 -6.908 -5.076 -6.182 0.000 0.000 0.000 0.000 [ MATP 46 ] 61 73 c g - - MP 170 169 6 174 6 2 2 26 44 -9.737 -9.677 -0.014 -8.453 -8.733 -9.128 -3.957 -3.755 -3.991 0.854 -3.095 -4.804 2.861 -3.703 -3.922 1.199 -4.432 -1.517 1.487 -4.162 -0.456 -2.741 ML 171 169 6 174 6 1 1 24 43 -6.405 -6.751 -1.108 -1.160 -6.601 -4.131 0.286 -0.598 0.261 -0.117 MR 172 169 6 174 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 62 72 c g - - MP 176 175 6 180 6 2 2 24 42 -9.745 -9.685 -0.014 -8.461 -8.741 -9.136 -2.714 -2.814 -1.552 0.510 -1.674 -3.718 2.434 -2.997 -2.891 0.776 -3.449 -1.132 2.039 -3.021 -0.115 -1.082 ML 177 175 6 180 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 63 71 g c - - MP 182 181 6 186 6 2 2 22 40 -9.745 -9.685 -0.014 -8.461 -8.741 -9.136 -2.367 -2.330 -2.520 1.870 -2.537 -3.340 1.355 -2.864 -1.959 2.026 -1.600 -0.344 1.044 -2.628 -0.259 -1.722 ML 183 181 6 186 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 6 186 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 186 186 5 186 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 64 70 C G - - MP 188 187 6 192 4 2 2 20 38 -8.245 -8.452 -0.021 -6.866 -8.346 -8.325 -5.848 -4.505 -5.777 -7.237 3.966 -7.658 -8.163 -4.340 -5.381 -6.295 -2.925 -8.461 -4.533 -6.984 ML 189 187 6 192 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 190 187 6 192 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 191 187 6 192 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 192 192 5 192 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 193 193 6 193 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 65 - a - - - ML 194 193 6 196 3 1 1 17 35 -9.199 -0.009 -7.853 0.905 -1.139 0.003 -0.576 D 195 193 6 196 3 0 0 17 35 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 66 - U - - - ML 197 196 3 199 3 1 1 15 34 -9.199 -0.015 -6.814 -2.386 -2.624 -3.504 1.831 D 198 196 3 199 3 0 0 16 34 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 67 - C - - - ML 200 199 3 202 3 1 1 14 32 -9.192 -0.009 -7.846 -2.480 1.792 -3.290 -1.971 D 201 199 3 202 3 0 0 14 33 -6.311 -1.423 -0.702 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 68 - C - - - ML 203 202 3 205 3 1 1 12 31 -9.199 -0.025 -6.033 -1.728 1.488 -1.083 -1.248 D 204 202 3 205 3 0 0 13 32 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 69 - U - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -2.336 -1.982 -2.503 1.754 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Bacillaceae-1 ACC RF01690 DESC Bacillaceae-1 RNA LENG 67 MAXL 129 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:36:05 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 95 EFFN 23.921051 CKSUM 2177017019 STATS LOCAL MSV -8.0728 0.71900 STATS LOCAL VITERBI -8.6399 0.71900 STATS LOCAL FORWARD -3.9973 0.71900 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37742 1.28119 1.35788 1.54712 1.38629 1.38629 1.38629 1.38629 0.06933 5.65121 2.75728 1.46634 0.26236 0.00000 * 1 0.72457 1.54566 1.87163 1.90767 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.00750 5.58939 5.58939 1.46634 0.26236 0.89000 0.52874 2 0.94472 2.12412 1.21931 1.62842 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.00730 5.61608 5.61608 1.46634 0.26236 0.16954 1.85823 3 1.23680 1.89957 1.35213 1.19943 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 4 0.84272 1.76889 1.80217 1.45244 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 5 0.35387 2.83376 1.99557 2.27007 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 6 0.41060 2.50855 2.60647 1.70613 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 7 2.54969 3.42296 0.32846 1.77639 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 8 3.03078 4.63512 0.11208 3.03554 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.03300 3.54228 5.65121 0.22723 1.59325 1.09861 0.40547 9 0.10928 3.24638 3.38172 3.48627 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.02483 5.65121 3.86276 1.46634 0.26236 1.09861 0.40547 10 0.69870 2.28379 2.18119 1.24493 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.00718 5.63356 5.63356 1.46634 0.26236 0.28851 1.38381 11 2.08437 0.47312 2.23088 1.93014 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 12 1.57255 2.06715 0.66996 1.86945 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 13 2.58243 0.66648 2.18063 1.21091 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 14 0.92241 0.95810 2.28790 2.14266 15 a - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 15 3.44529 3.28484 0.30255 1.65167 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02436 3.88475 5.65121 0.31259 1.31508 1.09861 0.40547 16 1.29509 2.75904 0.50074 2.87007 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 17 5.01808 0.22486 4.93691 1.67355 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 18 5.61381 5.23230 6.22026 0.01104 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 19 0.00898 6.08913 5.64068 5.76770 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.02115 5.65121 4.05036 1.46634 0.26236 1.09861 0.40547 20 0.02500 5.55905 4.12268 5.37273 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.13512 2.27396 3.75132 0.06786 2.72402 0.33893 1.24664 21 1.21509 2.65572 0.49668 3.70819 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.00719 5.63137 5.63137 1.46634 0.26236 2.15086 0.12373 22 1.04082 2.78890 1.39294 1.08766 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.03381 5.63137 3.51781 1.46634 0.26236 0.26497 1.45771 23 1.35369 1.62628 1.52546 1.11616 26 u - - - 1.38629 1.38629 1.38629 1.38629 0.00724 5.62531 5.62531 1.46634 0.26236 0.21641 1.63682 24 2.56460 0.21155 3.91691 2.36639 27 C - - - 1.38629 1.38629 1.38629 1.38629 0.34833 1.26679 4.39000 0.02476 3.71103 1.09861 0.40547 25 2.05578 1.52357 0.63268 2.09631 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.00711 5.64228 5.64228 1.46634 0.26236 0.44892 1.01699 26 1.99419 0.48760 3.27625 1.55114 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 27 2.84945 0.52317 1.74213 1.74676 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 28 0.38107 4.97232 1.20238 4.66038 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 29 4.76109 0.03234 5.72985 3.91089 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 30 1.15435 4.20462 0.45882 3.27596 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 31 5.61381 5.23230 6.22026 0.01104 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 32 3.78765 0.03864 5.25787 4.60071 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 33 4.00073 0.13752 2.35115 4.20496 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 34 4.70993 3.74319 5.23015 0.03878 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 35 4.27412 5.84543 0.02067 5.61661 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 36 4.82807 1.14492 4.74616 0.40787 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 37 1.85185 1.79179 0.51418 2.54593 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 38 1.61169 3.66189 0.45847 1.94829 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.01604 5.65121 4.39000 1.46634 0.26236 1.09861 0.40547 39 2.02275 0.58226 1.66241 2.12535 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.31362 1.32555 5.64228 0.20056 1.70524 0.44892 1.01699 40 0.04062 5.23041 3.56561 5.08670 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 41 0.06298 5.14432 3.02312 5.02701 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 42 3.12647 0.06230 5.21656 4.50078 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 43 1.59081 5.08468 0.24599 4.81361 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 44 3.56320 0.49827 2.65952 1.22387 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 45 1.69532 0.28072 3.94073 3.17517 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 46 2.25197 2.00131 1.11605 0.83915 53 u - - > 1.38629 1.38629 1.38629 1.38629 0.02004 5.65121 4.11510 1.46634 0.26236 1.09861 0.40547 47 1.24917 2.27203 0.65628 2.39275 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.00714 5.63832 5.63832 1.46634 0.26236 0.35798 1.20094 48 1.93982 0.65503 2.00387 1.59935 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 49 0.81542 2.68436 1.07222 1.91709 56 a - - > 1.38629 1.38629 1.38629 1.38629 0.11932 5.65121 2.21671 1.46634 0.26236 1.09861 0.40547 50 3.85381 2.66088 3.30233 0.13683 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.35119 5.53977 1.23024 1.46634 0.26236 3.49699 0.03076 51 2.45779 1.83707 0.33236 3.27368 58 G - - - 1.38629 1.38629 1.38629 1.38629 0.01110 5.19968 5.19968 1.46634 0.26236 0.01897 3.97426 52 0.28509 2.25205 2.98054 2.38486 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.08733 5.65121 2.52428 1.46634 0.26236 1.09861 0.40547 53 1.66680 0.85408 2.15496 1.31094 60 c - - < 1.38629 1.38629 1.38629 1.38629 0.00764 5.57151 5.57151 1.46634 0.26236 0.08407 2.51786 54 2.18749 0.59426 1.86377 1.71068 61 C - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 55 2.60659 0.80624 2.38005 0.94899 62 c - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 56 1.16227 1.90606 0.95849 1.86376 63 g - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 57 5.56948 0.01528 5.50423 4.92273 64 C - - < 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 58 0.64106 2.46816 1.30575 2.14082 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 59 3.55203 4.19286 4.82484 0.05319 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01243 5.65121 4.72901 1.46634 0.26236 1.09861 0.40547 60 3.56304 0.07700 4.09937 3.53447 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00709 5.64587 5.64587 1.46634 0.26236 0.58516 0.81422 61 3.44412 0.22892 2.03946 3.15639 68 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01999 5.65121 4.11813 1.46634 0.26236 1.09861 0.40547 62 3.97666 3.28821 3.41283 0.09323 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00714 5.63837 5.63837 1.46634 0.26236 0.35889 1.19882 63 4.89139 6.16057 0.01222 5.98201 70 G - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 64 2.07286 1.17228 1.53923 1.04991 71 u - - > 1.38629 1.38629 1.38629 1.38629 0.00705 5.65121 5.65121 1.46634 0.26236 1.09861 0.40547 65 1.08947 2.49361 0.70489 2.44381 72 g - - > 1.38629 1.38629 1.38629 1.38629 0.01747 5.65121 4.28253 1.46634 0.26236 1.09861 0.40547 66 1.86448 1.95855 0.54219 2.09977 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.02838 5.64086 3.71196 1.46634 0.26236 1.78005 0.18468 67 1.39148 2.14754 0.74615 1.83048 75 g - - > 1.38629 1.38629 1.38629 1.38629 0.00365 5.61613 * 1.46634 0.26236 0.00000 * //