INFERNAL1/a [1.1.5 | Sep 2023] NAME Bacillaceae-1 ACC RF01690 DESC Bacillaceae-1 RNA STATES 210 NODES 56 CLEN 67 W 82 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 00:33:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01690/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 95 EFFN 7.047882 CKSUM 2177017019 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -17.4648 0.71901 ECMLC 0.53723 -10.28550 0.94045 1600000 499304 0.002403 ECMGC 0.41188 -17.98272 -4.79054 1600000 91583 0.004368 ECMLI 0.53686 -7.52209 2.60489 1600000 275647 0.004353 ECMGI 0.46181 -12.66373 -1.59807 1600000 66282 0.006035 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 102 -8.243 -8.450 -0.084 -4.305 IL 1 1 2 1 4 1 26 87 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 2 25 82 102 -9.137 -0.009 -7.791 0.759 -0.244 -0.630 -0.291 D 4 2 3 5 3 0 21 81 100 -7.088 -1.690 -0.551 IL 5 5 3 5 3 1 24 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 2 24 81 101 -9.156 -0.009 -7.810 0.581 -0.775 0.010 -0.132 D 7 5 3 8 3 0 20 80 100 -6.862 -0.806 -1.254 IL 8 8 3 8 3 1 23 84 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 2 23 80 100 -9.197 -0.009 -7.851 0.265 -0.626 -0.125 0.303 D 10 8 3 11 3 0 19 79 99 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 83 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 22 79 99 -9.197 -0.009 -7.851 0.643 -0.494 -0.566 0.074 D 13 11 3 14 3 0 18 78 98 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 22 82 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 21 78 98 -9.197 -0.009 -7.851 1.335 -1.469 -0.827 -0.856 D 16 14 3 17 3 0 17 77 96 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 21 81 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 20 77 97 -9.197 -0.009 -7.851 1.213 -1.147 -1.265 -0.297 D 19 17 3 20 3 0 17 76 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 80 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 19 76 95 -9.197 -0.009 -7.851 -1.025 -2.003 1.382 -0.615 D 22 20 3 23 3 0 16 75 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 18 75 94 -6.128 -0.027 -7.851 -1.774 -3.292 1.754 -2.099 D 25 23 3 26 3 0 16 74 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 77 96 -1.538 -0.731 -4.238 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - - - ML 27 26 3 29 3 1 17 74 93 -9.197 -0.033 -5.585 1.776 -2.531 -2.283 -2.337 D 28 26 3 29 3 0 15 73 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 17 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 11 - a - - - ML 30 29 3 32 2 1 16 73 92 -9.721 -0.002 0.861 -0.955 -0.868 0.163 D 31 29 3 32 2 0 15 72 91 -8.476 -0.004 IL 32 32 3 32 2 1 16 74 93 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 11 ] - - - - - - B 33 32 3 34 153 0 15 72 91 [ BEGL 12 ] - - - - - - S 34 33 1 35 4 0 2 54 73 -0.026 -7.628 -7.035 -7.675 [ MATP 13 ] 12 56 c g - - MP 35 34 1 39 6 2 5 54 73 -9.744 -9.683 -0.014 -8.460 -8.740 -9.135 -2.703 -2.798 -2.859 1.071 1.395 -3.706 2.145 -2.994 -1.701 0.717 -3.439 -0.854 1.322 -3.008 -0.454 -1.956 ML 36 34 1 39 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 1 39 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 1 39 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 55 g c - - MP 41 40 6 45 6 2 5 52 71 -9.744 -9.683 -0.022 -6.821 -8.740 -9.135 -3.645 -1.359 -3.607 1.424 -3.959 -4.299 1.098 -4.038 -3.860 2.802 -4.245 -0.536 1.047 -3.573 -1.509 -2.615 ML 42 40 6 45 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 54 c g - - MP 47 46 6 51 6 2 4 50 69 -9.735 -9.675 -0.014 -8.451 -8.731 -9.126 -3.244 -3.241 -2.756 0.600 -2.030 -4.208 2.646 -2.331 -3.343 0.906 -3.887 -1.306 1.976 -3.521 -0.518 -2.310 ML 48 46 6 51 6 1 1 48 67 -6.419 -6.765 -1.092 -1.174 -6.615 -4.144 0.160 -0.368 -0.424 0.446 MR 49 46 6 51 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 53 a u - - MP 53 52 6 57 6 2 4 48 67 -9.744 -9.683 -0.014 -8.460 -8.740 -9.135 -2.016 -2.197 -2.205 2.036 -1.536 -1.053 1.955 -1.763 -2.265 0.866 -2.834 -0.793 1.035 -2.346 -0.312 -1.262 ML 54 52 6 57 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 52 G C - - MP 59 58 6 63 6 2 4 46 65 -7.930 -9.683 -0.018 -8.460 -8.740 -9.135 -4.071 -2.897 -3.974 0.655 -4.635 -2.081 -0.032 -4.519 -4.250 3.241 -4.560 -0.605 1.123 -3.180 -2.002 -2.964 ML 60 58 6 63 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 45 64 -2.643 -2.905 -0.718 -4.561 -5.337 -4.997 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 18 51 G C - - MP 65 64 6 69 6 2 3 44 63 -9.744 -9.683 -0.014 -8.460 -8.740 -9.135 -4.045 -2.782 -3.905 1.905 -4.829 -4.510 0.312 -4.529 -4.275 3.065 -4.559 -0.445 -0.341 -1.971 -2.054 -2.881 ML 66 64 6 69 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 19 50 C G - - MP 71 70 6 75 4 2 2 42 61 -8.243 -8.450 -0.021 -6.864 -5.244 -5.219 -4.938 -1.270 -1.372 -5.363 3.425 -4.364 -4.942 -1.109 -5.247 -3.113 1.645 -5.287 -1.195 -3.737 ML 72 70 6 75 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 42 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 41 60 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 77 76 6 79 3 1 1 39 58 -9.197 -0.009 -7.851 -3.700 -3.371 -4.492 1.919 D 78 76 6 79 3 0 0 38 57 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 80 79 3 82 3 1 1 38 57 -9.197 -0.027 -5.881 1.947 -4.667 -4.128 -4.386 D 81 79 3 82 3 0 0 37 56 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 83 82 3 85 3 1 1 37 56 -3.580 -0.163 -5.433 1.907 -4.073 -3.041 -3.849 D 84 82 3 85 3 0 0 35 54 -6.524 -1.123 -0.916 IL 85 85 3 85 3 1 1 38 56 -1.969 -0.504 -4.669 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 86 85 3 88 3 1 1 36 54 -9.170 -0.009 -7.824 0.237 -1.536 1.109 -1.644 D 87 85 3 88 3 0 0 35 54 -6.662 -2.175 -0.379 IL 88 88 3 88 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - a - - - ML 89 88 3 91 3 1 1 35 53 -9.170 -0.020 -6.398 0.415 -1.209 -0.107 0.385 D 90 88 3 91 3 0 0 34 53 -6.662 -0.976 -1.054 IL 91 91 3 91 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - u - - - ML 92 91 3 94 3 1 1 34 52 -9.186 -0.089 -4.109 0.139 -0.396 -0.251 0.377 D 93 91 3 94 3 0 0 33 52 -6.387 -1.304 -0.778 IL 94 94 3 94 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 95 94 3 97 3 1 1 33 51 -2.095 -0.393 -7.773 -1.382 1.573 -2.766 -1.019 D 96 94 3 97 3 0 0 32 50 -1.235 -1.502 -2.171 IL 97 97 3 97 3 1 1 32 51 -3.515 -0.162 -5.754 0.000 0.000 0.000 0.000 [ MATR 27 ] - 49 - C - - MR 98 97 3 100 3 1 1 31 50 -9.532 -0.008 -7.850 -2.317 1.833 -3.991 -2.524 D 99 97 3 100 3 0 0 30 48 -6.390 -1.568 -0.620 IR 100 100 3 100 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 48 - A - - MR 101 100 3 103 3 1 1 30 49 -9.532 -0.141 -3.444 1.845 -3.626 -2.108 -3.399 D 102 100 3 103 3 0 0 29 47 -6.390 -1.568 -0.620 IR 103 103 3 103 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 47 - A - - MR 104 103 3 106 5 1 1 29 48 -2.207 -0.384 -7.904 -8.116 -6.743 1.882 -3.778 -2.695 -3.542 D 105 103 3 106 5 0 0 28 47 -1.020 -1.652 -3.923 -5.354 -3.349 IR 106 106 3 106 5 1 1 29 48 -3.358 -0.208 -7.401 -5.569 -6.675 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 43 g c - - MP 107 106 3 111 6 2 2 28 46 -9.738 -9.677 -0.014 -8.453 -8.733 -9.128 -2.488 -0.775 -2.627 0.887 -1.553 -2.181 1.496 -2.983 -2.737 2.470 -3.263 -0.313 1.057 -2.722 -0.738 -1.816 ML 108 106 3 111 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 3 111 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 3 111 6 0 0 24 43 -9.209 -7.907 -2.459 -4.387 -4.404 -0.479 IL 111 111 5 111 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 42 c g - - MP 113 112 6 117 6 2 2 26 44 -9.744 -9.683 -0.014 -8.460 -8.740 -9.135 -3.950 -3.835 -3.983 1.016 -3.101 -4.768 2.948 -3.718 -3.928 0.218 -3.074 -1.684 1.750 -4.172 -0.710 -2.787 ML 114 112 6 117 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 41 c g - - MP 119 118 6 123 6 2 2 24 42 -9.744 -9.683 -0.014 -8.460 -8.740 -9.135 -3.909 -3.735 -3.951 0.418 -3.080 -4.766 2.919 -2.449 -3.886 1.308 -4.399 -1.527 1.473 -4.124 -0.656 -2.721 ML 120 118 6 123 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 40 a u - - MP 125 124 6 129 6 2 2 22 40 -9.744 -9.683 -0.014 -8.460 -8.740 -9.135 -4.403 -0.532 -4.391 2.966 -5.475 -5.423 -0.879 -4.803 -4.459 2.346 -4.908 -0.227 -1.092 -4.578 -2.810 -3.261 ML 126 124 6 129 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 39 C G - - MP 131 130 6 135 4 2 2 20 38 -8.243 -8.450 -0.021 -6.864 -7.566 -7.582 -4.475 -3.720 -4.040 -6.877 3.936 -6.722 -7.298 -3.569 -6.833 -5.566 -2.310 -7.624 -2.840 -6.108 ML 132 130 6 135 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 134 130 6 135 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 135 135 5 135 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 136 136 6 136 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - G - - - ML 137 136 6 139 3 1 1 17 35 -9.197 -0.009 -7.851 0.287 -2.490 1.198 -1.704 D 138 136 6 139 3 0 0 17 35 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - - - ML 140 139 3 142 3 1 1 15 34 -9.197 -0.009 -7.851 -3.700 -3.371 -4.492 1.919 D 141 139 3 142 3 0 0 16 34 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - C - - - ML 143 142 3 145 3 1 1 14 32 -9.197 -0.009 -7.851 -2.901 1.875 -4.202 -2.803 D 144 142 3 145 3 0 0 15 33 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - C - - - ML 146 145 3 148 3 1 1 12 31 -9.197 -0.009 -7.851 -2.369 1.694 -1.693 -1.936 D 147 145 3 148 3 0 0 13 32 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - U - - - ML 149 148 3 151 2 1 1 1 1 * 0.000 -3.123 -2.494 -3.875 1.864 D 150 148 3 151 2 0 0 0 0 * 0.000 IL 151 151 3 151 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 152 151 3 -1 0 0 0 0 0 [ BEGR 41 ] - - - - - - S 153 33 1 154 3 0 0 31 49 -9.197 -0.153 -3.334 IL 154 154 2 154 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 57 - U - - - ML 155 154 2 157 3 1 1 31 49 -9.053 -0.410 -2.027 -2.025 -1.445 -2.245 1.667 D 156 154 2 157 3 0 0 29 48 -7.788 -3.301 -0.162 IL 157 157 3 157 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 58 - G - - - ML 158 157 3 160 3 1 1 30 48 -8.656 -0.013 -7.310 -0.691 -0.716 1.224 -1.197 D 159 157 3 160 3 0 0 29 47 -9.136 -0.134 -3.527 IL 160 160 3 160 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 59 - A - - - ML 161 160 3 163 5 1 1 29 47 -8.216 -0.408 -2.516 -3.911 -9.136 1.411 -1.095 -1.575 -0.900 D 162 160 3 163 5 0 0 28 46 -4.959 -0.803 -4.221 -2.596 -2.508 IL 163 163 3 163 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 60 75 c g - - MP 164 163 3 168 6 2 2 28 46 -9.502 -9.441 -0.016 -8.218 -8.498 -8.893 -1.538 -1.974 -1.130 0.953 -1.538 -1.423 2.300 -2.292 -2.028 0.802 -2.600 -0.622 1.317 -2.107 -0.139 -0.461 ML 165 163 3 168 6 1 1 28 46 -7.986 -0.746 -2.393 -2.419 -8.182 -5.711 0.252 -0.364 -0.725 0.513 MR 166 163 3 168 6 1 1 26 45 -7.794 -6.523 -0.705 -6.501 -1.635 -4.715 1.263 -1.192 -0.932 -0.648 D 167 163 3 168 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 27 46 -3.323 -0.242 -6.834 -5.002 -6.108 0.000 0.000 0.000 0.000 [ MATP 46 ] 61 73 c g - - MP 170 169 6 174 6 2 2 26 44 -9.735 -9.675 -0.014 -8.451 -8.731 -9.126 -3.987 -3.781 -4.016 0.744 -3.104 -4.826 2.884 -3.716 -3.945 1.222 -4.453 -1.534 1.481 -4.189 -0.440 -2.758 ML 171 169 6 174 6 1 1 24 43 -6.419 -6.766 -1.091 -1.174 -6.615 -4.145 0.273 -0.609 0.285 -0.124 MR 172 169 6 174 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 62 72 c g - - MP 176 175 6 180 6 2 2 24 42 -9.744 -9.683 -0.014 -8.460 -8.740 -9.135 -2.674 -2.781 -1.462 0.524 -1.623 -3.681 2.416 -2.971 -2.856 0.783 -3.414 -1.115 2.028 -2.983 -0.082 -1.105 ML 177 175 6 180 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 63 71 g c - - MP 182 181 6 186 6 2 2 22 40 -9.744 -9.683 -0.014 -8.460 -8.740 -9.135 -2.323 -2.306 -2.481 1.876 -2.496 -3.303 1.345 -2.825 -1.887 1.983 -1.505 -0.319 1.070 -2.591 -0.257 -1.689 ML 183 181 6 186 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 6 186 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 186 186 5 186 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 64 70 C G - - MP 188 187 6 192 4 2 2 20 38 -8.243 -8.450 -0.021 -6.864 -8.188 -8.166 -5.682 -4.352 -5.729 -7.194 3.963 -7.535 -8.019 -4.187 -5.211 -6.135 -2.782 -8.311 -4.421 -6.846 ML 189 187 6 192 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 190 187 6 192 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 191 187 6 192 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 192 192 5 192 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 193 193 6 193 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 65 - a - - - ML 194 193 6 196 3 1 1 17 35 -9.197 -0.009 -7.851 0.902 -1.125 -0.012 -0.554 D 195 193 6 196 3 0 0 17 35 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 66 - U - - - ML 197 196 3 199 3 1 1 15 34 -9.197 -0.016 -6.741 -2.336 -2.602 -3.476 1.827 D 198 196 3 199 3 0 0 16 34 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 67 - C - - - ML 200 199 3 202 3 1 1 14 32 -9.189 -0.009 -7.844 -2.410 1.784 -3.230 -1.936 D 201 199 3 202 3 0 0 14 33 -6.323 -1.402 -0.715 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 68 - C - - - ML 203 202 3 205 3 1 1 12 31 -9.197 -0.021 -6.320 -1.616 1.441 -0.966 -1.160 D 204 202 3 205 3 0 0 13 32 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 69 - U - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -2.398 -1.985 -2.759 1.770 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Bacillaceae-1 ACC RF01690 DESC Bacillaceae-1 RNA LENG 67 MAXL 129 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 00:33:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01690/CM NSEQ 95 EFFN 23.671722 CKSUM 2177017019 STATS LOCAL MSV -8.0936 0.71901 STATS LOCAL VITERBI -8.6123 0.71901 STATS LOCAL FORWARD -4.0034 0.71901 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37388 1.28121 1.36099 1.54756 1.38629 1.38629 1.38629 1.38629 0.05610 5.64159 2.97568 1.46634 0.26236 0.00000 * 1 0.75725 1.49372 1.89260 1.85899 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.00748 5.59296 5.59296 1.46634 0.26236 1.15960 0.37631 2 0.90455 2.07107 1.29264 1.63640 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.00736 5.60825 5.60825 1.46634 0.26236 0.17835 1.81187 3 1.20796 1.93574 1.39809 1.17180 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 4 0.84906 1.77568 1.83303 1.41516 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 5 0.33070 2.83425 2.05251 2.36019 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 6 0.41161 2.48378 2.59642 1.71787 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 7 2.56176 3.39078 0.31617 1.83125 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 8 3.00183 4.60279 0.11516 3.01475 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.02201 4.00507 5.64159 0.35219 1.21451 1.09861 0.40547 9 0.09644 3.55151 3.40079 3.50969 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.02668 5.64159 3.78178 1.46634 0.26236 1.09861 0.40547 10 0.67069 2.32831 2.16318 1.28655 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.00726 5.62217 5.62217 1.46634 0.26236 0.27110 1.43776 11 2.06331 0.48524 2.19413 1.92440 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 12 1.59671 2.04374 0.66713 1.86618 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 13 2.56343 0.67489 2.19271 1.19688 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 14 0.94635 0.95358 2.24489 2.11571 15 a - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 15 3.43565 3.24748 0.29263 1.70033 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01268 4.70440 5.64159 0.65701 0.73064 1.09861 0.40547 16 1.25539 2.74501 0.52265 2.85004 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 17 5.00832 0.23496 4.92060 1.63259 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 18 5.59757 5.21794 6.20309 0.01121 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 19 0.00908 6.07759 5.62998 5.75760 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.02207 5.64159 4.00205 1.46634 0.26236 1.09861 0.40547 20 0.02677 5.51506 4.04152 5.33529 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.13333 2.30963 3.66822 0.07100 2.68037 0.32796 1.27436 21 1.20786 2.68729 0.49679 3.70430 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.00728 5.61975 5.61975 1.46634 0.26236 2.20706 0.11656 22 1.05998 2.76136 1.39269 1.07316 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.01609 5.61975 4.39554 1.46634 0.26236 0.24852 1.51391 23 1.34087 1.68727 1.50775 1.10277 26 u - - - 1.38629 1.38629 1.38629 1.38629 0.00718 5.63303 5.63303 1.46634 0.26236 0.46246 0.99353 24 2.56923 0.18878 3.98447 2.56613 27 C - - - 1.38629 1.38629 1.38629 1.38629 0.32889 1.31545 4.42942 0.02623 3.65392 1.09861 0.40547 25 2.02149 1.52007 0.64588 2.08230 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.00718 5.63318 5.63318 1.46634 0.26236 0.46694 0.98596 26 2.03118 0.49348 3.23913 1.51810 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 27 2.81413 0.50436 1.77494 1.79182 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 28 0.38091 4.95330 1.20374 4.64312 32 A - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 29 4.71558 0.03208 5.73292 3.94349 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 30 1.15679 4.17460 0.46209 3.21490 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 31 5.59757 5.21794 6.20309 0.01121 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 32 3.71734 0.04063 5.24427 4.58180 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 33 3.95488 0.12981 2.43491 4.20162 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 34 4.67362 3.68194 5.19240 0.04090 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 35 4.24966 5.84862 0.02099 5.62103 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 36 4.81221 1.13779 4.72761 0.41174 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 37 1.90250 1.82645 0.49705 2.50719 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 38 1.57777 3.63770 0.46279 1.98248 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.01559 5.64159 4.42942 1.46634 0.26236 1.09861 0.40547 39 2.00946 0.59444 1.65451 2.09654 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.28821 1.39910 5.63318 0.09456 2.40546 0.46694 0.98596 40 0.03565 5.28014 3.72999 5.12725 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 41 0.06087 5.14803 3.06417 5.02880 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 42 3.14811 0.06143 5.20884 4.49368 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 43 1.54587 5.06744 0.25834 4.79842 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 44 3.55176 0.51943 2.64526 1.18588 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 45 1.74865 0.26881 3.93980 3.16417 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 46 2.23923 1.95846 1.11574 0.85634 53 u - - > 1.38629 1.38629 1.38629 1.38629 0.01853 5.64159 4.21203 1.46634 0.26236 1.09861 0.40547 47 1.23168 2.28662 0.66733 2.36969 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.00720 5.63026 5.63026 1.46634 0.26236 0.39125 1.12766 48 1.93717 0.65092 1.98110 1.62758 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 49 0.80904 2.66254 1.09502 1.89438 56 a - - > 1.38629 1.38629 1.38629 1.38629 0.12515 5.64159 2.17077 1.46634 0.26236 1.09861 0.40547 50 3.83979 2.68510 3.27057 0.13662 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.34712 5.52445 1.24032 1.46634 0.26236 3.53115 0.02971 51 2.40098 1.79393 0.35143 3.23433 58 G - - - 1.38629 1.38629 1.38629 1.38629 0.01122 5.18855 5.18855 1.46634 0.26236 0.01910 3.96748 52 0.28365 2.30119 2.91957 2.37651 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.08919 5.64159 2.50375 1.46634 0.26236 1.09861 0.40547 53 1.72982 0.79916 2.19437 1.34114 60 c - - < 1.38629 1.38629 1.38629 1.38629 0.00773 5.56013 5.56013 1.46634 0.26236 0.08319 2.52789 54 2.30980 0.57972 1.83237 1.71131 61 C - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 55 2.56220 0.81413 2.36471 0.95227 62 c - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 56 1.15392 1.92022 0.96966 1.84001 63 g - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 57 5.34356 0.02064 5.21111 4.58569 64 C - - < 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 58 0.64402 2.45198 1.31842 2.11079 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 59 3.49073 4.16823 4.79761 0.05573 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01303 5.64159 4.66727 1.46634 0.26236 1.09861 0.40547 60 3.49107 0.08087 4.03582 3.52192 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00716 5.63572 5.63572 1.46634 0.26236 0.56241 0.84358 61 3.33698 0.25332 1.96098 3.04666 68 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01677 5.64159 4.33640 1.46634 0.26236 1.09861 0.40547 62 3.98092 3.24696 3.73904 0.08484 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00719 5.63201 5.63201 1.46634 0.26236 0.43324 1.04528 63 4.60455 6.03286 0.01545 5.83501 70 G - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 64 2.02977 1.20310 1.54146 1.03760 71 u - - > 1.38629 1.38629 1.38629 1.38629 0.00712 5.64159 5.64159 1.46634 0.26236 1.09861 0.40547 65 1.09283 2.47829 0.70475 2.44625 72 g - - > 1.38629 1.38629 1.38629 1.38629 0.01858 5.64159 4.20879 1.46634 0.26236 1.09861 0.40547 66 1.87118 1.92716 0.52591 2.21199 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.02880 5.63021 3.69672 1.46634 0.26236 1.82300 0.17619 67 1.43035 2.15453 0.71157 1.87118 75 g - - > 1.38629 1.38629 1.38629 1.38629 0.00369 5.60509 * 1.46634 0.26236 0.00000 * //