INFERNAL1/a [1.1.4 | Dec 2020] NAME Actino-pnp ACC RF01688 DESC Actino-pnp RNA STATES 193 NODES 40 CLEN 63 W 112 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 5 13:33:29 2022 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/14.9/R-scape_updates/RF01688/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 77 EFFN 4.807800 CKSUM 3384526815 NULL 0.000 0.000 0.000 0.000 GA 47.70 TC 47.70 NC 47.50 EFP7GF -13.9325 0.71913 ECMLC 0.67781 -4.72081 3.33201 1600000 281630 0.004261 ECMGC 0.43311 -16.91389 -3.86912 1600000 113697 0.003518 ECMLI 0.64500 -3.91924 4.27543 1600000 236963 0.005064 ECMGI 0.45036 -11.71786 0.20392 1600000 85865 0.004658 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 112 167 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 IL 1 1 2 1 6 1 7 114 169 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 7 114 169 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 106 a u - - MP 3 2 3 7 6 2 13 113 168 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -1.656 -1.477 -1.666 1.597 -1.853 -1.562 1.323 -1.628 -0.553 1.350 -2.485 -0.312 1.177 -1.406 -0.046 -0.474 ML 4 2 3 7 6 1 5 111 165 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 5 110 165 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 1 106 161 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 6 112 167 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 7 112 167 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 105 c g - - MP 9 8 6 13 6 2 12 111 166 -9.499 -5.375 -0.049 -8.215 -8.495 -8.890 -1.234 -1.888 -1.879 1.364 -1.269 -2.729 1.627 -2.222 -1.944 0.878 -1.882 0.202 1.560 -1.360 0.357 -1.144 ML 10 8 6 13 6 1 5 109 163 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 5 108 163 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 1 104 159 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 6 110 165 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 110 165 -2.644 -0.410 -6.155 -4.323 -5.428 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 103 c g - - MP 15 14 6 19 6 2 11 109 164 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -1.894 -2.064 -2.083 0.910 -2.004 -1.938 2.102 -2.385 -2.140 0.826 -2.249 -0.496 1.496 0.437 -0.174 -1.314 ML 16 14 6 19 6 1 5 107 162 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 106 161 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 103 158 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 108 163 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 108 163 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 102 G C - - MP 21 20 6 25 6 2 10 107 162 -9.499 -4.492 -0.080 -8.215 -8.495 -8.890 -5.505 -3.556 -5.652 -0.334 -6.677 -5.174 -1.714 -6.064 -4.942 3.718 -5.240 0.140 -1.986 -5.034 -3.790 -4.526 ML 22 20 6 25 6 1 4 105 160 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 104 159 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 101 156 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 5 106 161 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 6 106 161 -2.826 -0.354 -6.338 -4.505 -5.611 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 100 G C - - MP 27 26 6 31 6 2 9 105 160 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -4.621 -3.182 -4.686 0.364 -5.935 -5.556 -1.194 -4.978 -4.454 3.013 -4.916 2.394 -1.412 -4.887 -3.176 -3.467 ML 28 26 6 31 6 1 4 103 158 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 3 102 157 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 99 154 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 5 104 159 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 104 159 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 99 U A - - MP 33 32 6 37 6 2 8 103 158 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -4.845 -4.870 -4.554 -1.077 -3.241 -4.973 1.103 -4.040 -4.582 -0.942 -4.884 -2.897 3.260 -4.907 1.396 -3.414 ML 34 32 6 37 6 1 3 101 156 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 101 156 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 98 153 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 4 102 157 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 4 102 157 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 98 C G - - MP 39 38 6 43 4 2 6 101 156 -7.810 -8.017 -0.029 -6.431 -7.048 -7.120 -6.398 -3.400 -4.956 -2.696 3.918 -6.209 -6.783 -3.257 -6.507 -5.249 -1.918 -7.096 -3.086 -5.629 ML 40 38 6 43 4 1 2 100 155 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 1 99 154 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 98 153 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 4 101 156 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 4 100 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 45 44 6 47 3 1 5 99 154 -9.128 -0.011 -7.446 -1.870 1.396 -2.791 -0.074 D 46 44 6 47 3 0 0 97 152 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 2 99 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 97 - a - - MR 48 47 3 50 5 1 4 98 153 -7.827 -0.023 -7.642 -7.854 -8.746 0.844 -0.680 -0.960 0.093 D 49 47 3 50 5 0 0 96 151 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 1 98 153 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 96 U A - - MP 51 50 3 55 6 2 5 97 152 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -5.003 -5.048 -4.947 -1.447 -2.569 -5.563 0.245 -1.993 -4.951 -1.341 -5.388 -3.184 3.694 -5.180 -1.701 -3.671 ML 52 50 3 55 6 1 1 95 150 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 94 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 91 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 96 151 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 96 151 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 95 C G - - MP 57 56 6 61 6 2 5 95 150 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -6.350 -6.408 -5.704 -2.583 -4.144 -5.878 3.867 -5.151 -5.883 -2.504 -5.877 -4.460 -0.892 -6.296 -1.967 -4.687 ML 58 56 6 61 6 1 1 93 148 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 92 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 89 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 94 149 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 94 149 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 94 G C - - MP 63 62 6 67 6 2 4 93 148 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -5.570 -3.583 -5.735 -0.383 -6.748 -5.182 -1.775 -6.140 -4.968 3.736 -5.262 0.001 -2.048 -5.069 -3.857 -4.608 ML 64 62 6 67 6 1 1 91 146 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 90 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 87 142 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 92 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 92 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 93 G U - - MP 69 68 6 73 6 2 4 91 146 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -4.561 -3.188 -4.772 0.396 -6.422 -7.003 -1.864 -4.793 -4.322 1.192 -4.911 3.506 -2.008 -5.804 -3.770 -3.379 ML 70 68 6 73 6 1 1 89 144 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 89 144 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 86 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 90 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 90 145 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 92 U A - - MP 75 74 6 79 4 2 2 89 144 -7.810 -8.017 -0.029 -6.431 -6.416 -6.267 -5.993 -2.489 -4.580 -6.352 -0.262 -5.391 -5.983 -2.450 -6.259 -4.134 3.840 -6.433 -2.198 -4.398 ML 76 74 6 79 4 1 1 88 143 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 87 142 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 86 141 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 89 144 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 88 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - A - - - ML 81 80 6 83 3 1 1 87 142 -8.779 -0.012 -7.433 1.276 -1.102 -0.813 -0.882 D 82 80 6 83 3 0 0 84 139 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 87 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - G - - - ML 84 83 3 86 3 1 1 86 141 -8.779 -0.012 -7.433 -3.136 -4.537 1.917 -3.878 D 85 83 3 86 3 0 0 84 139 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 86 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - U - - - ML 87 86 3 89 3 1 1 85 140 -9.128 -0.011 -7.446 -3.012 -2.764 -3.791 1.870 D 88 86 3 89 3 0 0 83 138 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 85 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 91 - G - - MR 90 89 3 92 3 1 1 84 139 -9.128 -0.011 -7.446 -1.331 -1.871 1.592 -1.665 D 91 89 3 92 3 0 0 81 136 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 84 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 90 - C - - MR 93 92 3 95 3 1 1 83 138 -9.128 -0.011 -7.446 -3.607 1.894 -4.352 -2.712 D 94 92 3 95 3 0 0 81 136 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 83 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 89 - U - - MR 96 95 3 98 5 1 1 82 137 -7.827 -0.023 -7.642 -7.854 -8.746 -2.541 -2.070 -3.294 1.802 D 97 95 3 98 5 0 0 80 135 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 82 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 88 G U - - MP 99 98 3 103 6 2 2 81 136 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -4.543 -3.170 -4.740 0.408 -6.333 -6.741 -1.748 -4.792 -4.318 1.706 -4.893 3.367 -1.899 -5.647 -3.667 -3.367 ML 100 98 3 103 6 1 1 79 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 78 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 74 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 80 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 80 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 87 G C - - MP 105 104 6 109 6 2 2 79 134 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -5.097 -3.365 -5.144 0.666 -6.200 -5.092 -1.292 -5.602 -4.766 3.645 -5.082 -0.562 -1.556 -4.769 -3.337 -4.028 ML 106 104 6 109 6 1 1 77 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 76 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 73 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 78 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 78 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 86 c g - - MP 111 110 6 115 6 2 2 77 132 -3.909 -9.438 -0.114 -8.215 -8.495 -8.890 -3.440 -3.402 -3.508 0.599 -1.502 -4.304 2.496 -3.347 -3.477 0.468 -3.992 -1.382 2.216 -3.687 0.305 -2.396 ML 112 110 6 115 6 1 1 75 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 74 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 71 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 76 131 -3.459 -0.910 -1.639 -5.377 -6.153 -5.813 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 76 131 -3.002 -0.309 -6.514 -4.681 -5.787 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 84 u a - - MP 117 116 6 121 6 2 2 74 129 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -3.314 -3.245 -3.399 0.602 -2.731 -4.218 2.039 -3.287 -3.375 1.252 -3.901 -1.224 2.116 -3.561 1.118 -2.301 ML 118 116 6 121 6 1 1 73 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 72 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 69 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 74 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 74 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 83 c g - - MP 123 122 6 127 6 2 2 73 127 -9.499 -9.438 -0.117 -8.215 -8.495 -3.861 -1.736 -1.670 -1.932 1.016 -1.898 -1.944 1.709 -2.265 -1.624 0.936 -1.725 -0.587 1.215 -2.072 1.493 -0.955 ML 124 122 6 127 6 1 1 71 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 70 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 68 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 72 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 72 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 82 c g - - MP 129 128 6 133 6 2 2 71 126 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -1.776 -1.967 -1.967 1.267 -1.296 -2.816 1.579 0.817 -2.028 0.872 -2.597 -0.587 1.351 -1.159 0.138 -1.047 ML 130 128 6 133 6 1 1 69 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 68 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 68 123 -10.360 -9.059 -0.663 -5.538 -5.555 -1.631 IL 133 133 5 133 6 1 1 70 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 70 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 81 C G - - MP 135 134 6 139 6 2 2 69 124 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -6.350 -6.408 -5.704 -2.583 -4.144 -5.878 3.867 -5.151 -5.883 -2.504 -5.877 -4.460 -0.892 -6.296 -1.967 -4.687 ML 136 134 6 139 6 1 1 67 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 66 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 62 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 68 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 68 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 80 G C - - MP 141 140 6 145 6 2 2 67 122 -9.499 -9.438 -0.016 -8.215 -8.495 -8.890 -4.528 -3.057 -4.453 0.965 -5.286 -4.772 0.026 -4.965 -4.489 3.476 -4.787 -0.714 -0.781 -4.237 -2.499 -3.380 ML 142 140 6 145 6 1 1 65 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 64 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 60 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 66 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 66 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 79 G C - - MP 147 146 6 151 6 2 2 65 120 -4.610 -9.438 -0.095 -8.215 -7.072 -6.595 -3.978 -1.764 -3.860 0.986 -4.715 -4.421 0.665 -4.445 -4.152 3.228 -4.449 0.128 -0.251 -3.729 -1.966 -2.826 ML 148 146 6 151 6 1 1 63 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 62 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 58 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 64 119 -3.174 -3.436 -0.457 -5.092 -5.868 -5.528 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 64 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 78 g c - - MP 153 152 6 157 6 2 2 63 118 -3.416 -5.260 -0.237 -6.946 -8.476 -5.603 -2.101 -2.073 -0.968 1.776 -2.327 -3.079 1.145 -2.634 -2.362 2.073 -1.206 -0.348 0.879 -2.020 -0.257 -1.483 ML 154 152 6 157 6 1 1 61 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 60 115 -7.086 -5.815 -1.439 -5.793 -0.927 -4.007 0.325 -0.565 0.184 -0.097 D 156 152 6 157 6 0 0 56 111 -9.291 -7.990 -3.787 -4.469 -4.486 -0.265 IL 157 157 5 157 6 1 1 63 118 -1.332 -2.739 -1.244 -6.232 -7.008 -6.668 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 61 116 -2.902 -0.334 -6.413 -4.581 -5.687 0.000 0.000 0.000 0.000 [ MATP 31 ] 33 76 c g - - MP 159 158 6 163 6 2 2 60 115 -5.956 -4.960 -0.138 -8.169 -8.449 -4.777 -2.921 -2.806 -3.033 1.617 -2.642 -3.859 1.955 -3.105 -3.061 1.365 -3.591 -0.286 1.825 -3.161 -0.294 -2.038 ML 160 158 6 163 6 1 1 59 114 -3.522 -6.708 -1.423 -1.117 -6.558 -4.088 0.227 -0.033 -0.429 0.150 MR 161 158 6 163 6 1 1 59 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 53 108 -9.715 -8.414 -4.211 -4.893 -4.910 -0.193 IL 163 163 5 163 6 1 1 60 115 -2.893 -1.701 -1.074 -4.811 -5.587 -5.248 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 60 115 -1.599 -0.708 -6.750 -4.918 -6.024 0.000 0.000 0.000 0.000 [ MATP 32 ] 35 72 c g - - MP 165 164 6 169 6 2 2 58 113 -4.293 -9.350 -0.358 -5.819 -4.113 -3.443 -2.593 -2.580 -2.732 1.455 -1.718 -3.566 1.881 -2.878 -2.771 1.598 -3.314 -0.412 1.672 -2.864 -0.099 -1.810 ML 166 164 6 169 6 1 1 57 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 57 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 50 105 -10.266 -8.965 -4.762 -5.444 -5.461 -0.129 IL 169 169 5 169 6 1 1 58 113 -1.718 -3.884 -1.011 -3.269 -6.315 -5.976 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 58 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 38 71 c g - - MP 171 170 6 175 4 2 2 57 112 -1.285 -7.231 -0.828 -5.645 -2.536 -2.471 -2.664 1.276 -1.953 -3.489 1.978 -2.781 -2.699 1.546 -3.233 -0.223 1.630 -2.792 0.077 -1.712 ML 172 170 6 175 4 1 1 55 110 -1.686 -4.366 -0.933 -3.096 0.474 -0.527 -0.577 0.319 MR 173 170 6 175 4 1 1 56 111 -1.021 -4.765 -2.632 -1.693 0.094 0.101 -0.260 0.036 D 174 170 6 175 4 0 0 48 103 -4.691 -6.246 -0.371 -2.517 IL 175 175 5 175 4 1 1 57 112 -0.484 -6.107 -1.900 -8.592 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 45 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 49 - a - - - ML 177 176 6 179 3 1 1 43 89 -8.779 -0.012 -7.433 0.283 -0.511 -0.114 0.211 D 178 176 6 179 3 0 0 41 87 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 44 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 50 - a - - - ML 180 179 3 182 3 1 1 42 88 -8.779 -0.012 -7.433 0.389 -0.254 -0.587 0.246 D 181 179 3 182 3 0 0 40 86 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 43 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 51 - u - - - ML 183 182 3 185 3 1 1 41 87 -8.779 -0.278 -2.531 0.153 -0.336 -0.370 0.403 D 184 182 3 185 3 0 0 40 85 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 42 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 52 - a - - - ML 186 185 3 188 3 1 1 41 86 -0.988 -1.463 -2.909 0.464 -0.348 -0.297 0.030 D 187 185 3 188 3 0 0 39 85 -1.473 -3.582 -0.846 IL 188 188 3 188 3 1 1 41 87 -0.580 -2.024 -3.551 0.000 0.000 0.000 0.000 [ MATL 38 ] 70 - u - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 0.069 -0.264 0.025 0.138 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Actino-pnp ACC RF01688 DESC Actino-pnp RNA LENG 63 MAXL 137 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 5 13:33:29 2022 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 77 EFFN 16.416077 CKSUM 3384526815 STATS LOCAL MSV -8.0238 0.71913 STATS LOCAL VITERBI -8.7040 0.71913 STATS LOCAL FORWARD -3.6642 0.71913 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.74230 1.34179 1.16940 1.37455 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 0.00000 * 1 1.26149 1.69120 1.19702 1.46803 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 2 1.51780 1.43528 1.55435 1.10433 2 u - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 3 2.64776 0.86221 2.28483 0.90345 3 c - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 4 4.05118 5.18820 0.02931 5.13345 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 5 3.45807 4.98224 0.04885 4.67491 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 6 4.78422 3.02791 4.71396 0.06801 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 7 5.36159 0.02722 5.35094 4.05027 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 8 3.93570 0.28469 4.62940 1.52117 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 9 4.93774 2.28425 4.84019 0.12435 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 10 5.81130 0.01577 5.81728 4.63845 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 11 4.07278 5.21099 0.02860 5.16512 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 12 3.37387 5.08255 0.05087 4.69521 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 13 6.01420 5.01476 6.10641 0.01138 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 14 0.33502 2.39410 2.10645 2.63450 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 15 4.82253 5.96143 0.01556 5.33509 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 16 5.05234 4.72941 5.63130 0.01899 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 17 3.38344 5.12338 0.04993 4.73099 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 18 2.44082 4.80372 0.11039 4.68533 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 19 2.60777 0.84150 2.87571 0.82357 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.16742 1.91037 5.09398 0.08090 2.55466 1.09861 0.40547 20 2.65666 1.42108 1.81179 0.64435 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 21 2.02578 1.36755 1.79559 0.80442 22 u - - < 1.38629 1.38629 1.38629 1.38629 0.17134 5.09398 1.88829 1.46634 0.26236 1.09861 0.40547 22 1.73497 0.80454 2.14903 1.34822 23 c - - < 1.38629 1.38629 1.38629 1.38629 0.01445 4.93710 4.93710 1.46634 0.26236 0.07794 2.59049 23 5.61168 0.01743 5.67731 4.58491 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 24 2.23157 2.96685 0.19784 3.87895 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 25 2.20880 2.26308 0.29620 3.15833 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.13510 2.38300 3.37841 0.12802 2.11891 1.09861 0.40547 26 1.04713 2.36135 0.80921 2.21134 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.29888 1.55329 3.06195 0.70856 0.67797 1.04593 0.43288 27 1.36542 1.35284 1.71910 1.18093 33 u - - < 1.38629 1.38629 1.38629 1.38629 0.14322 2.98201 2.49202 0.23946 1.54672 2.51121 0.08465 28 1.50358 1.38000 1.38857 1.28498 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.39659 2.08510 1.59408 0.61839 0.77395 3.17967 0.04249 29 1.59825 1.30088 1.47405 1.21584 38 u - - < 1.38629 1.38629 1.38629 1.38629 1.09411 0.42098 4.73760 1.30596 0.31596 0.03931 3.25575 30 1.18659 1.81191 1.38505 1.26909 49 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 31 1.07171 1.54270 1.86146 1.24366 50 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 32 1.32279 1.63741 1.61906 1.07575 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.12142 5.09398 2.22375 1.46634 0.26236 1.09861 0.40547 33 1.00367 1.61151 1.56829 1.48952 52 a - - _ 1.38629 1.38629 1.38629 1.38629 1.26960 0.55732 1.92198 1.26445 0.33183 2.97763 0.05226 34 1.44234 1.51736 1.23498 1.37242 70 g - - _ 1.38629 1.38629 1.38629 1.38629 0.37823 4.83610 1.18095 1.46634 0.26236 0.95190 0.48777 35 1.44459 1.59052 1.14519 1.41809 71 g - - > 1.38629 1.38629 1.38629 1.38629 0.01965 4.63247 4.63247 1.46634 0.26236 0.45276 1.01024 36 1.39993 1.56121 1.27446 1.33211 72 g - - > 1.38629 1.38629 1.38629 1.38629 0.14715 2.04180 4.95582 0.71019 0.67639 0.63657 0.75312 37 1.29884 2.03780 1.24261 1.17698 76 u - - > 1.38629 1.38629 1.38629 1.38629 0.14507 2.05159 5.03512 0.09832 2.36826 0.50754 0.92124 38 2.69211 0.97771 1.52108 1.08585 78 c - - > 1.38629 1.38629 1.38629 1.38629 0.01257 5.07601 5.07601 1.46634 0.26236 0.41366 1.08241 39 3.41890 0.35502 2.19204 1.86817 79 C - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 40 4.09585 0.21369 2.90037 2.11400 80 C - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 41 4.75409 5.79453 0.01564 5.55744 81 G - - > 1.38629 1.38629 1.38629 1.38629 0.17134 5.09398 1.88829 1.46634 0.26236 1.09861 0.40547 42 1.70007 2.02934 1.40639 0.81898 82 u - - > 1.38629 1.38629 1.38629 1.38629 0.01445 4.93710 4.93710 1.46634 0.26236 0.07794 2.59049 43 1.91036 1.94993 0.58947 1.86389 83 G - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 44 1.09780 1.88412 0.84388 2.47230 84 g - - > 1.38629 1.38629 1.38629 1.38629 0.16742 1.91037 5.09398 0.08090 2.55466 1.09861 0.40547 45 0.95622 3.05788 0.72739 2.45923 86 g - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 46 4.86016 0.14281 4.65950 2.15536 87 C - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 47 4.92009 1.77192 4.88837 0.20437 88 U - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 48 4.26630 3.43095 4.78137 0.05633 89 U - - - 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 49 5.23770 0.01919 5.56525 4.61835 90 C - - - 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 50 2.92021 2.84221 0.17606 3.01166 91 G - - - 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 51 0.01446 6.29332 4.74147 5.57646 92 A - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 52 4.85285 2.22972 4.84081 0.13155 93 U - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 53 5.25084 0.10224 5.11263 2.45429 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 54 4.85915 5.98010 0.01352 5.76378 95 G - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 55 0.11158 4.99541 2.98827 3.02750 96 A - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 56 0.66795 2.01044 2.31724 1.36740 97 A - - - 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 57 4.29210 3.50248 0.05062 5.19238 98 G - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 58 0.30737 4.82743 1.40307 4.53093 99 A - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 59 4.74519 0.70722 4.72449 0.71453 100 c - - > 1.38629 1.38629 1.38629 1.38629 0.11239 2.30088 5.09398 0.11826 2.19342 1.09861 0.40547 60 5.17445 0.11426 5.06016 2.34375 102 C - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 61 1.65338 1.28132 0.83749 2.32144 103 g - - > 1.38629 1.38629 1.38629 1.38629 0.06348 2.89357 5.09398 0.20846 1.67042 1.09861 0.40547 62 1.33088 2.02154 1.16154 1.23684 105 g - - > 1.38629 1.38629 1.38629 1.38629 0.01234 5.09398 5.09398 1.46634 0.26236 1.09861 0.40547 63 1.63365 1.33075 1.68308 1.03647 106 u - - > 1.38629 1.38629 1.38629 1.38629 0.00619 5.08783 * 1.46634 0.26236 0.00000 * //