INFERNAL1/a [1.1.4 | Dec 2020] NAME Acido-1 ACC RF01686 DESC Acido-1 RNA STATES 201 NODES 53 CLEN 64 W 84 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:35:54 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.644531 CKSUM 2183641695 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 59.40 NC 48.90 EFP7GF -7.1550 0.72267 ECMLC 0.56956 -11.04458 0.28412 1600000 761023 0.001577 ECMGC 0.39090 -18.05271 -3.79179 1600000 105460 0.003793 ECMLI 0.52746 -10.39364 1.35338 1600000 589014 0.002037 ECMGI 0.41922 -13.42746 -0.81249 1600000 79219 0.005049 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 84 105 -7.215 -7.422 -0.044 -5.836 IL 1 1 2 1 4 1 18 87 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 16 84 105 -8.214 -0.017 -6.868 1.100 -1.639 0.091 -1.087 D 4 2 3 5 3 0 14 82 103 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 85 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 15 83 104 -8.214 -0.017 -6.868 1.100 -1.639 0.091 -1.087 D 7 5 3 8 3 0 14 81 103 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 16 84 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 2 1 14 82 103 -8.651 -0.004 0.783 -1.014 -1.181 0.425 D 10 8 3 11 2 0 13 81 102 -8.445 -0.004 IL 11 11 3 11 2 1 15 83 104 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 4 ] - - - - - - B 12 11 3 13 84 0 13 81 102 [ BEGL 5 ] - - - - - - S 13 12 1 14 4 0 0 42 63 -0.040 -6.974 -6.382 -7.022 [ MATP 6 ] 4 32 G C - - MP 14 13 1 18 6 2 2 42 63 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -5.231 -3.331 -5.392 -0.136 -5.917 -4.878 -1.160 -5.658 -4.632 3.736 -4.937 -1.053 -1.533 -4.784 -3.226 -4.261 ML 15 13 1 18 6 1 1 40 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 1 18 6 1 1 40 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 1 18 6 0 0 38 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 41 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 41 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 31 g c - - MP 20 19 6 24 6 2 2 40 61 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -3.735 -2.890 -3.682 0.711 -3.452 -4.283 1.809 -3.791 -3.762 2.884 -4.150 -0.624 0.542 -3.711 -1.012 -2.596 ML 21 19 6 24 6 1 1 38 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 6 1 1 38 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 6 24 6 0 0 36 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 39 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 39 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 30 c g - - MP 26 25 6 30 6 2 2 38 59 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -3.171 -2.704 -3.218 1.639 -2.931 -4.011 2.081 -3.309 -3.277 2.045 -3.756 -0.541 1.009 -3.325 -0.595 -2.163 ML 27 25 6 30 6 1 1 36 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 36 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 34 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 37 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 37 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 29 c g - - MP 32 31 6 36 6 2 2 36 57 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -3.059 -2.868 -3.138 0.698 -2.583 -3.910 2.298 -3.094 -3.135 1.077 -3.630 0.889 1.778 -3.287 -0.296 -2.081 ML 33 31 6 36 6 1 1 34 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 34 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 32 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 35 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 35 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 28 C G - - MP 38 37 6 42 6 2 2 34 55 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -5.101 -5.054 -4.695 -1.245 -3.303 -5.033 3.691 -4.168 -4.768 -1.070 -4.964 -3.013 0.149 -5.132 -1.028 -3.591 ML 39 37 6 42 6 1 1 32 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 32 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 30 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 33 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 33 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 27 c g - - MP 44 43 6 48 6 2 2 32 53 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -3.256 -3.233 -3.268 0.189 -2.540 -3.932 2.856 -3.146 1.104 0.337 -3.732 -1.410 1.002 -3.490 -0.332 -2.280 ML 45 43 6 48 6 1 1 30 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 30 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 28 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 31 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 31 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 26 G C - - MP 50 49 6 54 6 2 2 30 51 -9.215 -9.154 -0.124 -7.931 -8.211 -3.813 -3.968 -2.716 -3.965 1.765 -4.638 -4.604 -0.052 -4.333 -3.947 3.183 -4.348 -0.330 -0.346 -3.967 -2.037 -2.860 ML 51 49 6 54 6 1 1 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 28 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 26 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 29 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 25 A U - - MP 56 55 6 60 4 2 2 28 49 -1.662 -7.168 -1.279 -1.915 -3.818 -2.842 -3.835 3.349 -4.186 -5.250 0.116 -3.875 -3.725 1.050 -4.274 -0.314 -0.301 -4.434 -1.825 -2.667 ML 57 55 6 60 4 1 1 26 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 4 1 1 25 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 59 55 6 60 4 0 0 26 46 -5.686 -0.828 -3.383 -1.638 IL 60 60 5 60 4 1 1 27 48 -2.925 -0.603 -2.356 -6.093 0.000 0.000 0.000 0.000 IR 61 61 6 61 3 1 1 26 47 -1.280 -0.814 -5.689 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - C - - - ML 62 61 6 64 3 1 1 20 39 -2.384 -0.326 -6.559 -1.598 1.583 -2.417 -1.041 D 63 61 6 64 3 0 0 18 37 -7.814 -0.361 -2.206 IL 64 64 3 64 3 1 1 20 39 -1.945 -0.514 -4.645 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 65 64 3 67 3 1 1 19 37 -8.214 -0.017 -6.868 -0.572 -1.031 -0.138 0.948 D 66 64 3 67 3 0 0 18 37 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - G - - - ML 68 67 3 70 3 1 1 17 36 -8.214 -0.017 -6.868 0.312 -1.776 1.022 -1.197 D 69 67 3 70 3 0 0 17 35 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 71 70 3 73 3 1 1 16 35 -8.214 -0.330 -2.314 0.312 -1.776 1.022 -1.197 D 72 70 3 73 3 0 0 16 34 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 74 73 3 76 3 1 1 15 33 -7.905 -0.021 -6.559 -1.454 -2.653 1.693 -2.040 D 75 73 3 76 3 0 0 14 32 -7.814 -3.327 -0.159 IL 76 76 3 76 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 77 76 3 79 3 1 1 13 32 -7.905 -0.021 -6.559 -1.377 -1.392 -2.105 1.586 D 78 76 3 79 3 0 0 12 31 -7.814 -3.327 -0.159 IL 79 79 3 79 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 80 79 3 82 2 1 1 1 1 * 0.000 1.692 -2.252 -1.896 -1.783 D 81 79 3 82 2 0 0 0 0 * 0.000 IL 82 82 3 82 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 83 82 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 84 12 1 85 3 0 0 53 72 -8.214 -0.017 -6.868 IL 85 85 2 85 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 33 - u - - - ML 86 85 2 88 3 1 1 53 72 -8.214 -0.017 -6.868 -0.572 -1.031 -0.138 0.948 D 87 85 2 88 3 0 0 52 71 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 34 - G - - - ML 89 88 3 91 3 1 1 52 71 -8.214 -0.017 -6.868 0.312 -1.776 1.022 -1.197 D 90 88 3 91 3 0 0 51 70 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 35 - c - - - ML 92 91 3 94 3 1 1 51 70 -8.214 -0.017 -6.868 0.228 0.791 -1.445 -0.452 D 93 91 3 94 3 0 0 50 69 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 36 - A - - - ML 95 94 3 97 3 1 1 50 69 -8.214 -0.017 -6.868 1.808 -2.877 -2.459 -2.471 D 96 94 3 97 3 0 0 49 68 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 37 - C - - - ML 98 97 3 100 3 1 1 49 68 -8.214 -0.017 -6.868 -2.354 1.755 -3.184 -1.646 D 99 97 3 100 3 0 0 47 67 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 38 - U - - - ML 101 100 3 103 3 1 1 48 67 -8.214 -0.017 -6.868 -1.958 -1.873 -2.712 1.730 D 102 100 3 103 3 0 0 46 66 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 39 - c - - - ML 104 103 3 106 3 1 1 47 66 -8.214 -0.017 -6.868 -0.623 0.785 -0.148 -0.464 D 105 103 3 106 3 0 0 45 65 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 40 - A - - - ML 107 106 3 109 3 1 1 45 65 -8.214 -0.017 -6.868 1.808 -2.877 -2.459 -2.471 D 108 106 3 109 3 0 0 44 64 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 41 - g - - - ML 110 109 3 112 3 1 1 44 63 -8.214 -0.017 -6.868 -0.624 -1.325 0.927 0.072 D 111 109 3 112 3 0 0 43 62 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 42 - a - - - ML 113 112 3 115 3 1 1 43 62 -8.214 -0.017 -6.868 0.970 -1.097 -1.221 0.195 D 114 112 3 115 3 0 0 42 61 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 43 - G - - - ML 116 115 3 118 3 1 1 42 61 -8.214 -0.017 -6.868 -2.103 -3.397 1.819 -2.784 D 117 115 3 118 3 0 0 41 60 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 44 - G - - - ML 119 118 3 121 3 1 1 41 60 -8.214 -0.017 -6.868 0.312 -1.776 1.022 -1.197 D 120 118 3 121 3 0 0 40 59 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 45 - g - - - ML 122 121 3 124 3 1 1 40 59 -8.214 -0.017 -6.868 -0.572 -0.271 0.912 -0.699 D 123 121 3 124 3 0 0 39 58 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 46 - U - - - ML 125 124 3 127 5 1 1 39 58 -2.826 -0.248 -7.129 -7.341 -8.232 -1.958 -1.873 -2.712 1.730 D 126 124 3 127 5 0 0 37 56 -4.959 -0.803 -4.221 -2.596 -2.508 IL 127 127 3 127 5 1 1 39 58 -2.935 -0.326 -4.614 -6.446 -5.719 0.000 0.000 0.000 0.000 [ MATP 37 ] 48 71 G C - - MP 128 127 3 132 6 2 2 38 56 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -4.172 -2.801 -4.193 0.687 -5.005 -4.704 -0.370 -4.571 -4.073 3.283 -4.464 1.265 -0.641 -4.141 -2.357 -3.075 ML 129 127 3 132 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 3 132 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 49 70 G C - - MP 134 133 6 138 6 2 2 36 54 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -3.968 -2.716 -3.965 1.765 -4.638 -4.604 -0.052 -4.333 -3.947 3.183 -4.348 -0.330 -0.346 -3.967 -2.037 -2.860 ML 135 133 6 138 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 50 69 C G - - MP 140 139 6 144 6 2 2 34 52 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -5.101 -5.054 -4.695 -1.245 -3.303 -5.033 3.691 -4.168 -4.768 -1.070 -4.964 -3.013 0.149 -5.132 -1.028 -3.591 ML 141 139 6 144 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 51 68 G C - - MP 146 145 6 150 6 2 2 32 50 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -5.231 -3.331 -5.392 -0.136 -5.917 -4.878 -1.160 -5.658 -4.632 3.736 -4.937 -1.053 -1.533 -4.784 -3.226 -4.261 ML 147 145 6 150 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 52 67 G C - - MP 152 151 6 156 6 2 2 30 48 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -5.231 -3.331 -5.392 -0.136 -5.917 -4.878 -1.160 -5.658 -4.632 3.736 -4.937 -1.053 -1.533 -4.784 -3.226 -4.261 ML 153 151 6 156 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 53 66 c g - - MP 158 157 6 162 6 2 2 28 46 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -3.968 -3.911 -3.813 -0.107 -2.676 -4.362 2.857 -3.409 -3.817 0.104 -4.194 -1.858 2.275 -4.093 -0.335 -2.667 ML 159 157 6 162 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 54 65 G C - - MP 164 163 6 168 6 2 2 26 44 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -5.231 -3.331 -5.392 -0.136 -5.917 -4.878 -1.160 -5.658 -4.632 3.736 -4.937 -1.053 -1.533 -4.784 -3.226 -4.261 ML 165 163 6 168 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 55 64 g c - - MP 170 169 6 174 6 2 2 24 42 -9.215 -9.154 -0.020 -7.931 -8.211 -8.606 -3.869 -2.618 -3.965 0.912 -4.826 -4.991 -0.316 -4.186 -3.778 2.638 -4.253 2.451 -0.577 -4.257 -2.270 -2.759 ML 171 169 6 174 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 56 63 G C - - MP 176 175 6 180 4 2 2 22 40 -7.215 -7.422 -0.044 -5.836 -5.231 -3.331 -5.392 -0.136 -5.917 -4.878 -1.160 -5.658 -4.632 3.736 -4.937 -1.053 -1.533 -4.784 -3.226 -4.261 ML 177 175 6 180 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 179 175 6 180 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 180 180 5 180 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 181 181 6 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 57 - A - - - ML 182 181 6 184 3 1 1 19 37 -8.214 -0.017 -6.868 1.808 -2.877 -2.459 -2.471 D 183 181 6 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 58 - G - - - ML 185 184 3 187 3 1 1 17 36 -8.214 -0.017 -6.868 -2.103 -3.397 1.819 -2.784 D 186 184 3 187 3 0 0 17 36 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 59 - G - - - ML 188 187 3 190 3 1 1 16 35 -8.214 -0.017 -6.868 0.312 -1.776 1.022 -1.197 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 60 - G - - - ML 191 190 3 193 3 1 1 15 33 -8.214 -0.017 -6.868 -2.103 -3.397 1.819 -2.784 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 61 - G - - - ML 194 193 3 196 3 1 1 13 31 -8.214 -0.017 -6.868 0.312 -1.776 1.022 -1.197 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 62 - u - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 0.393 -0.964 -1.226 0.805 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Acido-1 ACC RF01686 DESC Acido-1 RNA LENG 64 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:35:54 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 4 EFFN 3.238281 CKSUM 2183641695 STATS LOCAL MSV -8.3392 0.72267 STATS LOCAL VITERBI -9.1934 0.72267 STATS LOCAL FORWARD -3.2209 0.72267 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56149 1.37702 1.04906 1.67354 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 0.58709 2.65697 1.30194 2.28384 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 0.58709 2.65697 1.30194 2.28384 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 0.81482 2.16007 2.27668 1.08076 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 2.84767 3.63694 0.11902 3.57923 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 2.17780 1.45242 0.63889 2.08081 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 1.49557 1.24482 1.17283 1.72375 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 2.15088 1.08207 1.36125 1.24347 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 3.60264 0.15991 3.42416 2.43097 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 2.59298 0.67411 1.40194 1.77506 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 1.44267 2.80671 0.45544 2.67173 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.22145 4.12713 1.70091 1.46634 0.26236 1.09861 0.40547 11 0.33016 2.80729 1.85751 2.73703 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.94941 1.07983 1.29689 0.11028 2.25940 0.16275 1.89582 12 2.74724 0.22249 3.32203 2.30968 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.29037 1.46295 3.88918 0.16824 1.86533 0.13239 2.08749 13 1.86692 2.18451 1.47053 0.68704 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 1.17094 2.75321 0.63135 2.36097 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 1.17094 2.75321 0.63135 2.36097 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.27974 4.12713 1.47888 1.46634 0.26236 1.09861 0.40547 16 2.61574 3.48167 0.16357 3.05714 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88918 3.88918 1.46634 0.26236 2.78064 0.06400 17 2.53370 2.51073 3.04786 0.23324 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88918 3.88918 1.46634 0.26236 2.78064 0.06400 18 0.16935 3.15760 2.88973 2.85310 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.89344 0.56160 3.88918 0.37041 1.17263 0.13239 2.08749 19 2.96174 2.15482 2.61856 0.27517 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 2.90778 0.51747 2.61938 1.28544 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 1.25255 2.57304 0.60842 2.36754 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 2.70995 3.58807 0.13781 3.36551 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 1.40923 1.99729 0.97263 1.41932 29 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 1.95555 1.28474 1.13831 1.34158 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 2.32581 0.69908 1.35702 1.91173 31 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 3.71712 0.14598 3.45601 2.52620 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 1.86692 2.18451 1.47053 0.68704 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 1.17094 2.75321 0.63135 2.36097 34 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.23203 0.78025 2.50185 1.78334 35 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 0.10223 3.62809 3.31593 3.37240 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 3.31427 0.12736 3.88154 2.77088 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 2.98077 2.88325 3.51054 0.14686 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.92782 0.77511 1.47509 1.80107 39 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 0.10223 3.62809 3.31593 3.37240 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 1.91475 2.41011 0.68554 1.35093 41 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 0.67934 2.22276 2.31238 1.25276 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 3.08859 4.01379 0.09585 3.58383 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 1.17094 2.75321 0.63135 2.36097 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 1.88852 1.56778 0.68611 1.99022 45 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 2.98077 2.88325 3.51054 0.14686 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.22145 1.70091 4.12713 0.16824 1.86533 1.09861 0.40547 41 2.22343 3.02696 0.23973 2.87427 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 1.44189 2.80207 0.45685 2.66561 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 3.58819 0.16095 3.41650 2.42824 50 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 2.83499 3.61956 0.12113 3.55557 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.83583 3.62070 0.12099 3.55712 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 2.74739 0.72583 2.51312 0.99165 53 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 2.83598 3.62092 0.12096 3.55741 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 2.07910 3.04229 0.26116 2.86341 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 2.83564 3.62044 0.12102 3.55677 56 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 0.10223 3.62809 3.31593 3.37240 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 3.08859 4.01379 0.09585 3.58383 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 1.17094 2.75321 0.63135 2.36097 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 3.08859 4.01379 0.09585 3.58383 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 1.17094 2.75321 0.63135 2.36097 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 1.10275 2.12808 2.30977 0.79919 62 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 3.73243 0.14501 3.46340 2.52909 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 3.07853 0.92856 2.84315 0.69193 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 3.73380 0.14493 3.46405 2.52935 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 1.10521 2.68091 0.65572 2.50976 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 3.73467 0.14487 3.46447 2.52951 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 3.73420 0.14490 3.46425 2.52943 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 2.70796 3.58499 0.13820 3.36203 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 63 2.90390 0.51801 2.61779 1.28546 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 64 3.10729 0.45264 2.84914 1.34156 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //