INFERNAL1/a [1.1.5 | Sep 2023] NAME Acido-1 ACC RF01686 DESC Acido-1 RNA STATES 201 NODES 53 CLEN 64 W 83 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 05:31:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01686/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.699219 CKSUM 2183641695 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 61.40 NC 39.40 EFP7GF -7.0652 0.72298 ECMLC 0.57217 -11.01058 0.29393 1600000 773086 0.001552 ECMGC 0.39664 -17.86363 -3.79702 1600000 105963 0.003775 ECMLI 0.53219 -10.30711 1.34182 1600000 590935 0.002031 ECMGI 0.42260 -13.36397 -0.84204 1600000 79474 0.005033 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 83 104 -7.233 -7.440 -0.043 -5.854 IL 1 1 2 1 4 1 18 87 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 16 83 104 -8.231 -0.017 -6.885 1.061 -1.647 0.170 -1.090 D 4 2 3 5 3 0 14 82 102 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 15 82 103 -8.231 -0.017 -6.885 1.061 -1.647 0.170 -1.090 D 7 5 3 8 3 0 14 81 101 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 16 84 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 2 1 14 81 101 -8.672 -0.004 0.758 -1.014 -1.188 0.460 D 10 8 3 11 2 0 13 80 100 -8.445 -0.004 IL 11 11 3 11 2 1 15 82 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 4 ] - - - - - - B 12 11 3 13 84 0 13 80 100 [ BEGL 5 ] - - - - - - S 13 12 1 14 4 0 0 41 61 -0.040 -6.985 -6.392 -7.032 [ MATP 6 ] 4 32 G C - - MP 14 13 1 18 6 2 2 41 61 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -5.264 -3.347 -5.431 -0.160 -5.963 -4.891 -1.198 -5.697 -4.652 3.742 -4.955 -1.071 -1.570 -4.805 -3.266 -4.300 ML 15 13 1 18 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 1 18 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 1 18 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 31 g c - - MP 20 19 6 24 6 2 2 39 59 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -3.724 -2.913 -3.673 0.697 -3.402 -4.286 1.893 -3.762 -3.751 2.836 -4.144 -0.651 0.583 -3.713 -0.969 -2.584 ML 21 19 6 24 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 6 24 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 30 c g - - MP 26 25 6 30 6 2 2 37 57 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -3.167 -2.730 -3.218 1.684 -2.900 -4.018 2.130 -3.292 -3.268 1.947 -3.752 -0.576 1.030 -3.335 -0.571 -2.161 ML 27 25 6 30 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 29 c g - - MP 32 31 6 36 6 2 2 35 55 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -3.084 -2.871 -3.163 0.684 -2.605 -3.924 2.317 -3.114 -3.156 1.073 -3.645 0.995 1.710 -3.310 -0.315 -2.102 ML 33 31 6 36 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 33 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 28 C G - - MP 38 37 6 42 6 2 2 33 53 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -5.140 -5.096 -4.727 -1.285 -3.328 -5.060 3.699 -4.197 -4.802 -1.114 -4.993 -3.057 0.119 -5.168 -1.055 -3.624 ML 39 37 6 42 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 31 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 32 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 27 c g - - MP 44 43 6 48 6 2 2 31 51 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -3.298 -3.274 -3.303 0.150 -2.560 -3.960 2.843 -3.171 1.240 0.296 -3.763 -1.449 0.974 -3.529 -0.351 -2.314 ML 45 43 6 48 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 29 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 30 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 26 G C - - MP 50 49 6 54 6 2 2 29 49 -9.223 -9.162 -0.109 -7.939 -8.219 -4.009 -3.947 -2.708 -3.943 1.838 -4.621 -4.610 -0.041 -4.310 -3.935 3.150 -4.340 -0.318 -0.333 -3.959 -2.023 -2.838 ML 51 49 6 54 6 1 1 27 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 28 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 25 A U - - MP 56 55 6 60 4 2 2 27 47 -1.644 -7.225 -1.336 -1.851 -3.911 -2.912 -3.920 3.404 -4.318 -5.393 -0.011 -3.955 -3.807 0.949 -4.361 -0.369 -0.428 -4.560 -1.951 -2.747 ML 57 55 6 60 4 1 1 25 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 4 1 1 24 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 59 55 6 60 4 0 0 25 45 -5.584 -0.913 -3.280 -1.535 IL 60 60 5 60 4 1 1 26 46 -2.969 -0.581 -2.400 -6.138 0.000 0.000 0.000 0.000 IR 61 61 6 61 3 1 1 25 45 -1.352 -0.766 -5.627 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - C - - - ML 62 61 6 64 3 1 1 20 39 -2.565 -0.286 -6.548 -1.572 1.575 -2.389 -1.020 D 63 61 6 64 3 0 0 18 37 -7.904 -0.336 -2.296 IL 64 64 3 64 3 1 1 21 39 -1.890 -0.538 -4.590 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - u - - - ML 65 64 3 67 3 1 1 19 37 -8.231 -0.017 -6.885 -0.563 -1.040 -0.053 0.905 D 66 64 3 67 3 0 0 18 37 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - g - - - ML 68 67 3 70 3 1 1 17 36 -8.231 -0.017 -6.885 0.386 -1.763 0.970 -1.183 D 69 67 3 70 3 0 0 17 35 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - g - - - ML 71 70 3 73 3 1 1 16 35 -8.231 -0.359 -2.206 0.386 -1.763 0.970 -1.183 D 72 70 3 73 3 0 0 16 34 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 74 73 3 76 3 1 1 15 33 -7.894 -0.022 -6.548 -1.430 -2.626 1.687 -2.012 D 75 73 3 76 3 0 0 13 32 -7.904 -3.417 -0.148 IL 76 76 3 76 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 77 76 3 79 3 1 1 13 32 -7.894 -0.022 -6.548 -1.357 -1.376 -2.084 1.579 D 78 76 3 79 3 0 0 12 31 -7.904 -3.417 -0.148 IL 79 79 3 79 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 80 79 3 82 2 1 1 1 1 * 0.000 1.687 -2.230 -1.876 -1.759 D 81 79 3 82 2 0 0 0 0 * 0.000 IL 82 82 3 82 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 83 82 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 84 12 1 85 3 0 0 53 72 -8.231 -0.017 -6.885 IL 85 85 2 85 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 33 - u - - - ML 86 85 2 88 3 1 1 53 72 -8.231 -0.017 -6.885 -0.563 -1.040 -0.053 0.905 D 87 85 2 88 3 0 0 52 71 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 34 - g - - - ML 89 88 3 91 3 1 1 52 71 -8.231 -0.017 -6.885 0.386 -1.763 0.970 -1.183 D 90 88 3 91 3 0 0 51 70 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 35 - c - - - ML 92 91 3 94 3 1 1 51 70 -8.231 -0.017 -6.885 0.301 0.737 -1.425 -0.455 D 93 91 3 94 3 0 0 50 69 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 36 - A - - - ML 95 94 3 97 3 1 1 50 69 -8.231 -0.017 -6.885 1.813 -2.912 -2.491 -2.510 D 96 94 3 97 3 0 0 48 68 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 37 - C - - - ML 98 97 3 100 3 1 1 49 68 -8.231 -0.017 -6.885 -2.396 1.762 -3.226 -1.681 D 99 97 3 100 3 0 0 47 67 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 38 - U - - - ML 101 100 3 103 3 1 1 48 67 -8.231 -0.017 -6.885 -1.991 -1.901 -2.746 1.736 D 102 100 3 103 3 0 0 46 66 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 39 - c - - - ML 104 103 3 106 3 1 1 47 66 -8.231 -0.017 -6.885 -0.607 0.727 -0.052 -0.467 D 105 103 3 106 3 0 0 45 65 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 40 - A - - - ML 107 106 3 109 3 1 1 45 64 -8.231 -0.017 -6.885 1.813 -2.912 -2.491 -2.510 D 108 106 3 109 3 0 0 44 63 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 41 - g - - - ML 110 109 3 112 3 1 1 44 63 -8.231 -0.017 -6.885 -0.607 -1.292 0.867 0.152 D 111 109 3 112 3 0 0 43 62 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 42 - a - - - ML 113 112 3 115 3 1 1 43 62 -8.231 -0.017 -6.885 0.922 -1.079 -1.216 0.264 D 114 112 3 115 3 0 0 42 61 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 43 - G - - - ML 116 115 3 118 3 1 1 42 61 -8.231 -0.017 -6.885 -2.139 -3.437 1.823 -2.823 D 117 115 3 118 3 0 0 41 60 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 44 - g - - - ML 119 118 3 121 3 1 1 41 60 -8.231 -0.017 -6.885 0.386 -1.763 0.970 -1.183 D 120 118 3 121 3 0 0 40 59 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 45 - g - - - ML 122 121 3 124 3 1 1 40 59 -8.231 -0.017 -6.885 -0.565 -0.185 0.862 -0.673 D 123 121 3 124 3 0 0 39 58 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 46 - U - - - ML 125 124 3 127 5 1 1 39 58 -3.028 -0.216 -7.144 -7.356 -8.248 -1.991 -1.901 -2.746 1.736 D 126 124 3 127 5 0 0 37 56 -4.959 -0.803 -4.221 -2.596 -2.508 IL 127 127 3 127 5 1 1 39 58 -2.878 -0.341 -4.556 -6.389 -5.662 0.000 0.000 0.000 0.000 [ MATP 37 ] 48 71 G C - - MP 128 127 3 132 6 2 2 38 56 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -4.160 -2.797 -4.182 0.698 -5.006 -4.724 -0.373 -4.556 -4.066 3.254 -4.462 1.368 -0.643 -4.148 -2.358 -3.060 ML 129 127 3 132 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 3 132 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 49 70 G C - - MP 134 133 6 138 6 2 2 36 54 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -3.947 -2.708 -3.943 1.838 -4.621 -4.610 -0.041 -4.310 -3.935 3.150 -4.340 -0.318 -0.333 -3.959 -2.023 -2.838 ML 135 133 6 138 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 50 69 C G - - MP 140 139 6 144 6 2 2 34 52 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -5.140 -5.096 -4.727 -1.285 -3.328 -5.060 3.699 -4.197 -4.802 -1.114 -4.993 -3.057 0.119 -5.168 -1.055 -3.624 ML 141 139 6 144 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 51 68 G C - - MP 146 145 6 150 6 2 2 32 50 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -5.264 -3.347 -5.431 -0.160 -5.963 -4.891 -1.198 -5.697 -4.652 3.742 -4.955 -1.071 -1.570 -4.805 -3.266 -4.300 ML 147 145 6 150 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 52 67 G C - - MP 152 151 6 156 6 2 2 30 48 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -5.264 -3.347 -5.431 -0.160 -5.963 -4.891 -1.198 -5.697 -4.652 3.742 -4.955 -1.071 -1.570 -4.805 -3.266 -4.300 ML 153 151 6 156 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 53 66 c g - - MP 158 157 6 162 6 2 2 28 46 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -3.984 -3.927 -3.828 -0.121 -2.689 -4.377 2.843 -3.422 -3.831 0.089 -4.208 -1.873 2.308 -4.109 -0.347 -2.681 ML 159 157 6 162 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 54 65 G C - - MP 164 163 6 168 6 2 2 26 44 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -5.264 -3.347 -5.431 -0.160 -5.963 -4.891 -1.198 -5.697 -4.652 3.742 -4.955 -1.071 -1.570 -4.805 -3.266 -4.300 ML 165 163 6 168 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 55 64 g c - - MP 170 169 6 174 6 2 2 24 42 -9.223 -9.162 -0.019 -7.939 -8.219 -8.614 -3.900 -2.642 -3.987 0.890 -4.855 -4.980 -0.331 -4.223 -3.812 2.701 -4.282 2.393 -0.591 -4.254 -2.288 -2.788 ML 171 169 6 174 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 56 63 G C - - MP 176 175 6 180 4 2 2 22 40 -7.233 -7.440 -0.043 -5.854 -5.264 -3.347 -5.431 -0.160 -5.963 -4.891 -1.198 -5.697 -4.652 3.742 -4.955 -1.071 -1.570 -4.805 -3.266 -4.300 ML 177 175 6 180 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 179 175 6 180 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 180 180 5 180 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 181 181 6 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 57 - A - - - ML 182 181 6 184 3 1 1 19 37 -8.231 -0.017 -6.885 1.813 -2.912 -2.491 -2.510 D 183 181 6 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 58 - G - - - ML 185 184 3 187 3 1 1 17 36 -8.231 -0.017 -6.885 -2.139 -3.437 1.823 -2.823 D 186 184 3 187 3 0 0 17 36 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 59 - g - - - ML 188 187 3 190 3 1 1 16 35 -8.231 -0.017 -6.885 0.386 -1.763 0.970 -1.183 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 60 - G - - - ML 191 190 3 193 3 1 1 15 33 -8.231 -0.017 -6.885 -2.139 -3.437 1.823 -2.823 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 61 - g - - - ML 194 193 3 196 3 1 1 13 31 -8.231 -0.017 -6.885 0.386 -1.763 0.970 -1.183 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 62 - u - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 0.428 -0.973 -1.227 0.781 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Acido-1 ACC RF01686 DESC Acido-1 RNA LENG 64 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 05:31:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01686/CM NSEQ 4 EFFN 3.246094 CKSUM 2183641695 STATS LOCAL MSV -8.3993 0.72298 STATS LOCAL VITERBI -9.2009 0.72298 STATS LOCAL FORWARD -3.2088 0.72298 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55145 1.38132 1.05418 1.66953 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 0.61827 2.65087 1.24617 2.27373 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 0.61827 2.65087 1.24617 2.27373 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 0.83593 2.15432 2.27532 1.05618 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 2.84970 3.63989 0.11871 3.58221 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 2.18151 1.39268 0.67500 2.04359 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 1.46766 1.21161 1.23800 1.70455 6 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 2.15742 1.07069 1.32542 1.28766 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 3.60588 0.15940 3.42775 2.43363 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 2.60586 0.69246 1.35501 1.78455 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 1.39374 2.78643 0.47867 2.65061 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.19185 4.12713 1.84236 1.46634 0.26236 1.09861 0.40547 11 0.30719 2.88081 1.91029 2.80741 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.97788 1.07795 1.26018 0.10708 2.28724 0.18531 1.77694 12 2.70301 0.23271 3.27694 2.27433 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.25602 1.58474 3.86951 0.19247 1.74252 0.12453 2.14482 13 1.85114 2.18256 1.40803 0.72244 15 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 1.11509 2.73121 0.67241 2.33824 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 1.11509 2.73121 0.67241 2.33824 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.30026 4.12713 1.41370 1.46634 0.26236 1.09861 0.40547 16 2.57761 3.43797 0.17104 3.01333 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86951 3.86951 1.46634 0.26236 2.83797 0.06033 17 2.49984 2.48271 3.01246 0.24180 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04263 3.86951 3.86951 1.46634 0.26236 2.83797 0.06033 18 0.17625 3.12107 2.85684 2.81290 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.87378 0.57668 3.86951 0.34227 1.23841 0.12453 2.14482 19 3.03099 2.21453 2.69139 0.25523 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 2.88717 0.54329 2.59857 1.24114 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 1.21252 2.58663 0.62601 2.37990 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 2.71262 3.59163 0.13736 3.36882 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 1.45951 1.99506 0.96358 1.38581 29 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 1.93573 1.35527 1.10647 1.32021 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 2.28835 0.73655 1.29932 1.91674 31 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 3.71981 0.14561 3.45899 2.52815 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 1.85114 2.18256 1.40803 0.72244 33 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 1.11509 2.73121 0.67241 2.33824 34 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.17589 0.82514 2.47512 1.77709 35 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 0.10190 3.63111 3.31869 3.37572 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 3.31784 0.12693 3.88493 2.77385 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 2.98369 2.88570 3.51354 0.14643 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.90306 0.82411 1.40303 1.79329 39 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 0.10190 3.63111 3.31869 3.37572 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 1.89113 2.37353 0.73320 1.28889 41 g - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 0.71669 2.20242 2.29953 1.20134 42 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 3.09151 4.01703 0.09554 3.58697 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 1.11509 2.73121 0.67241 2.33824 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 1.87255 1.50405 0.72783 1.95839 45 g - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 2.98369 2.88570 3.51354 0.14643 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.19185 1.84236 4.12713 0.19247 1.74252 1.09861 0.40547 41 2.20838 3.01695 0.24326 2.86296 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 1.39319 2.78257 0.47986 2.64552 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 3.59320 0.16031 3.42103 2.43124 50 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 2.83743 3.62306 0.12074 3.55930 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.83810 3.62398 0.12063 3.56055 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 2.74591 0.73965 2.51161 0.97446 53 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 2.83811 3.62399 0.12063 3.56057 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 2.08506 3.03037 0.26164 2.85393 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 2.83771 3.62344 0.12069 3.55982 56 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 0.10190 3.63111 3.31869 3.37572 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 3.09151 4.01703 0.09554 3.58697 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 1.11509 2.73121 0.67241 2.33824 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 3.09151 4.01703 0.09554 3.58697 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 1.11509 2.73121 0.67241 2.33824 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 1.07810 2.12762 2.30324 0.81938 62 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 3.73536 0.14464 3.46649 2.53109 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 3.07081 0.88084 2.83221 0.73334 64 u - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 3.73685 0.14454 3.46720 2.53137 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 1.08593 2.67946 0.66864 2.50831 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 3.73796 0.14448 3.46773 2.53158 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 3.73767 0.14449 3.46760 2.53152 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 2.71094 3.58905 0.13769 3.36588 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 63 2.88395 0.54374 2.59727 1.24119 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 64 3.09511 0.47564 2.83691 1.29230 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //